Wall clock time and date at job start Sun Mar 29 2020 22:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50693 * 120.00202 * 2 1 4 4 N 1.46904 * 109.47255 * 124.07395 * 3 2 1 5 5 C 1.46907 * 111.00010 * 62.29434 * 4 3 2 6 6 C 1.50699 * 109.46884 * 66.04777 * 5 4 3 7 7 H 1.08007 * 119.99692 * 0.02562 * 6 5 4 8 8 C 1.37878 * 119.99986 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99768 * 180.02562 * 8 6 5 10 10 Si 1.86797 * 120.00084 * 0.02562 * 8 6 5 11 11 H 1.48498 * 109.46957 * 89.99612 * 10 8 6 12 12 H 1.48490 * 109.47043 * 210.00044 * 10 8 6 13 13 H 1.48497 * 109.46986 * 330.00109 * 10 8 6 14 14 C 1.46902 * 110.99779 * 298.34733 * 4 3 2 15 15 C 1.50703 * 109.47272 * 288.45138 * 14 4 3 16 16 C 1.39874 * 126.03780 * 95.20838 * 15 14 4 17 17 N 1.30841 * 108.19871 * 179.97438 * 16 15 14 18 18 N 1.40083 * 108.20530 * 0.02562 * 17 16 15 19 19 C 1.46506 * 126.03554 * 179.97438 * 18 17 16 20 20 C 1.34947 * 107.92677 * 359.75849 * 18 17 16 21 21 H 1.07997 * 120.00138 * 179.97438 * 1 2 3 22 22 H 1.08007 * 119.99634 * 359.97438 * 1 2 3 23 23 H 1.07999 * 119.99510 * 180.02562 * 2 1 3 24 24 H 1.08999 * 109.47552 * 4.07694 * 3 2 1 25 25 H 1.09000 * 109.47659 * 244.07095 * 3 2 1 26 26 H 1.08998 * 109.46846 * 306.05060 * 5 4 3 27 27 H 1.08999 * 109.47184 * 186.05173 * 5 4 3 28 28 H 0.96999 * 119.99988 * 180.02562 * 9 8 6 29 29 H 1.09002 * 109.47522 * 48.45372 * 14 4 3 30 30 H 1.09005 * 109.47184 * 168.45745 * 14 4 3 31 31 H 1.07995 * 125.89855 * 0.02562 * 16 15 14 32 32 H 1.09000 * 109.46994 * 89.97337 * 19 18 17 33 33 H 1.08994 * 109.47367 * 209.97740 * 19 18 17 34 34 H 1.09001 * 109.46618 * 329.97825 * 19 18 17 35 35 H 1.08000 * 126.12331 * 180.24649 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9804 1.3411 1.1472 5 6 3.9825 0.2709 1.0541 6 6 4.8796 0.5245 -0.1299 7 1 4.7214 1.3940 -0.7508 8 6 5.9030 -0.3528 -0.4198 9 7 6.6862 -0.1312 -1.4528 10 14 6.1770 -1.8561 0.6546 11 1 5.3843 -2.9944 0.1245 12 1 7.6187 -2.2119 0.6496 13 1 5.7458 -1.5569 2.0437 14 6 2.2415 1.2615 2.4144 15 6 1.5096 2.5573 2.6514 16 6 0.1765 2.8219 2.3209 17 7 -0.0977 4.0497 2.6803 18 7 1.0541 4.6062 3.2512 19 6 1.1812 5.9643 3.7858 20 6 2.0245 3.6688 3.2262 21 1 -0.5400 -0.9353 -0.0004 22 1 -0.5400 0.9354 0.0004 23 1 1.8499 -0.9353 -0.0004 24 1 1.3576 2.1323 0.0731 25 1 2.6344 1.3951 -0.9242 26 1 3.4795 -0.6880 0.9301 27 1 4.5801 0.2525 1.9655 28 1 7.4059 -0.7486 -1.6571 29 1 1.5238 0.4425 2.3657 30 1 2.9402 1.0841 3.2320 31 1 -0.5084 2.1316 1.8510 32 1 0.9163 5.9648 4.8432 33 1 2.2094 6.3062 3.6687 34 1 0.5121 6.6323 3.2434 35 1 3.0323 3.7856 3.5967 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292063837.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:54 Heat of formation + Delta-G solvation = 89.525350 kcal Electronic energy + Delta-G solvation = -16490.053564 eV Core-core repulsion = 13911.056035 eV Total energy + Delta-G solvation = -2578.997529 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.05374 -38.93722 -34.84818 -34.25522 -33.65815 -31.77788 -29.57874 -28.18848 -26.84509 -24.79645 -22.60785 -21.91129 -21.14413 -20.15054 -18.84007 -17.52095 -16.69132 -16.62546 -16.10381 -15.95277 -15.50966 -15.06225 -14.54683 -14.47319 -14.03306 -13.80051 -13.48955 -13.34293 -13.09359 -12.84667 -12.58996 -12.47751 -12.13388 -11.96017 -11.73671 -11.46157 -11.32651 -10.74525 -10.27329 -10.20597 -9.29220 -8.83940 -8.23116 -6.25114 1.02588 1.37401 1.39040 1.44194 1.50075 1.76856 1.89007 2.38440 3.10891 3.58854 3.71606 4.09328 4.15069 4.29749 4.37453 4.48825 4.50151 4.53191 4.67634 4.72523 4.85948 4.92050 4.95622 5.07460 5.16096 5.27397 5.35366 5.60315 5.74726 5.78497 5.88788 6.08686 6.21886 6.47820 6.77195 6.79991 6.81607 7.38163 8.93825 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.029075 B = 0.006604 C = 0.005941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.789983 B = 4238.860980 C = 4711.720781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.192 4.192 3 C 0.098 3.902 4 N -0.530 5.530 5 C 0.169 3.831 6 C -0.508 4.508 7 H 0.034 0.966 8 C 0.007 3.993 9 N -0.952 5.952 10 Si 0.945 3.055 11 H -0.270 1.270 12 H -0.284 1.284 13 H -0.245 1.245 14 C 0.131 3.869 15 C -0.236 4.236 16 C 0.049 3.951 17 N -0.332 5.332 18 N -0.382 5.382 19 C 0.095 3.905 20 C 0.071 3.929 21 H 0.110 0.890 22 H 0.108 0.892 23 H 0.090 0.910 24 H 0.075 0.925 25 H 0.050 0.950 26 H -0.007 1.007 27 H 0.030 0.970 28 H 0.265 0.735 29 H 0.044 0.956 30 H 0.074 0.926 31 H 0.189 0.811 32 H 0.089 0.911 33 H 0.107 0.893 34 H 0.090 0.910 35 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.360 5.851 11.999 18.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.212 4.212 3 C -0.029 4.029 4 N -0.253 5.253 5 C 0.042 3.958 6 C -0.546 4.546 7 H 0.052 0.948 8 C -0.190 4.190 9 N -0.593 5.593 10 Si 0.768 3.232 11 H -0.195 1.195 12 H -0.210 1.210 13 H -0.169 1.169 14 C 0.003 3.997 15 C -0.248 4.248 16 C -0.137 4.137 17 N -0.155 5.155 18 N -0.165 5.165 19 C -0.045 4.045 20 C -0.077 4.077 21 H 0.128 0.872 22 H 0.126 0.874 23 H 0.108 0.892 24 H 0.093 0.907 25 H 0.069 0.931 26 H 0.011 0.989 27 H 0.048 0.952 28 H 0.074 0.926 29 H 0.062 0.938 30 H 0.092 0.908 31 H 0.206 0.794 32 H 0.107 0.893 33 H 0.125 0.875 34 H 0.108 0.892 35 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -12.824 7.344 12.032 19.057 hybrid contribution 0.887 -2.043 -0.271 2.244 sum -11.937 5.301 11.761 17.576 Atomic orbital electron populations 1.23942 0.94684 1.02663 0.99704 1.23556 0.97227 0.99486 1.00954 1.21046 0.93641 0.94102 0.94151 1.62150 1.14217 1.47259 1.01653 1.19972 0.90621 0.89214 0.95955 1.21264 1.13182 1.08815 1.11353 0.94763 1.25820 0.95395 1.01285 0.96480 1.70061 1.20087 1.39217 1.29948 0.85750 0.77464 0.79345 0.80612 1.19505 1.20999 1.16875 1.20279 0.95286 0.92604 0.91580 1.20012 0.95012 0.98285 1.11494 1.23975 0.96275 0.93849 0.99558 1.77208 1.08160 1.10940 1.19157 1.48755 1.07783 1.12903 1.47048 1.22149 1.05229 0.77082 1.00028 1.22664 0.95748 0.88868 1.00381 0.87176 0.87402 0.89174 0.90695 0.93126 0.98891 0.95232 0.92627 0.93804 0.90754 0.79404 0.89296 0.87454 0.89175 0.79062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.52 14.27 67.78 0.97 -3.55 16 2 C -0.19 -6.57 7.47 25.64 0.19 -6.37 16 3 C 0.10 3.84 5.48 85.55 0.47 4.31 16 4 N -0.53 -21.67 4.65 -909.91 -4.23 -25.90 16 5 C 0.17 7.97 3.61 85.56 0.31 8.28 16 6 C -0.51 -29.27 9.04 25.60 0.23 -29.04 16 7 H 0.03 2.23 7.36 -2.91 -0.02 2.21 16 8 C 0.01 0.40 5.47 84.65 0.46 0.86 16 9 N -0.95 -59.87 13.96 21.45 0.30 -59.57 16 10 Si 0.94 43.82 27.47 68.60 1.88 45.70 16 11 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 12 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 13 H -0.25 -10.45 6.54 99.48 0.65 -9.80 16 14 C 0.13 4.29 5.32 85.56 0.46 4.74 16 15 C -0.24 -7.03 4.99 -20.14 -0.10 -7.13 16 16 C 0.05 1.39 11.08 85.24 0.94 2.34 16 17 N -0.33 -9.76 12.58 -57.02 -0.72 -10.48 16 18 N -0.38 -9.54 4.01 -369.56 -1.48 -11.02 16 19 C 0.09 1.39 11.47 127.77 1.47 2.86 16 20 C 0.07 1.87 11.40 83.54 0.95 2.82 16 21 H 0.11 2.45 8.06 -2.91 -0.02 2.42 16 22 H 0.11 2.49 7.11 -2.91 -0.02 2.47 16 23 H 0.09 3.40 6.74 -2.91 -0.02 3.38 16 24 H 0.07 2.68 6.36 -2.39 -0.02 2.66 16 25 H 0.05 2.35 6.80 -2.39 -0.02 2.34 16 26 H -0.01 -0.30 5.68 -2.39 -0.01 -0.31 16 27 H 0.03 1.38 6.92 -2.39 -0.02 1.36 16 28 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 29 H 0.04 1.38 6.79 -2.39 -0.02 1.36 16 30 H 0.07 2.33 7.82 -2.38 -0.02 2.32 16 31 H 0.19 4.57 7.28 -2.91 -0.02 4.55 16 32 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.09 1.24 8.14 -2.39 -0.02 1.23 16 35 H 0.19 4.13 8.06 -2.91 -0.02 4.11 16 Total: -1.00 -70.80 290.73 3.11 -67.69 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: 1.01 Total: 13.47 kcal Atomic # 6 Polarization: -26.24 SS G_CDS: 6.35 Total: -19.89 kcal Atomic # 7 Polarization: -100.84 SS G_CDS: -6.13 Total: -106.97 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 1.88 Total: 45.70 kcal Total: -70.80 3.11 -67.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292063837.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.219 kcal (2) G-P(sol) polarization free energy of solvation -70.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds