Wall clock time and date at job start Sun Mar 29 2020 22:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50707 * 119.99985 * 2 1 4 4 N 1.46900 * 109.47208 * 125.00152 * 3 2 1 5 5 C 1.46906 * 110.99904 * 288.79636 * 4 3 2 6 6 C 1.50692 * 109.47154 * 160.46868 * 5 4 3 7 7 H 1.07998 * 120.00176 * 356.67239 * 6 5 4 8 8 C 1.37879 * 119.99794 * 176.68332 * 6 5 4 9 9 N 1.31518 * 120.00091 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99922 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.47274 * 359.97438 * 10 8 6 12 12 H 1.48507 * 109.47245 * 119.99670 * 10 8 6 13 13 H 1.48499 * 109.47040 * 239.99423 * 10 8 6 14 14 C 1.46896 * 111.00201 * 164.84140 * 4 3 2 15 15 C 1.50706 * 109.47040 * 293.95159 * 14 4 3 16 16 C 1.34663 * 126.59153 * 94.96021 * 15 14 4 17 17 N 1.34124 * 108.02127 * 180.02562 * 16 15 14 18 18 C 1.30499 * 109.25530 * 359.71822 * 17 16 15 19 19 N 1.35044 * 108.69989 * 0.44800 * 18 17 16 20 20 C 1.46499 * 126.39891 * 179.82204 * 19 18 17 21 21 H 1.08002 * 119.99478 * 0.02562 * 1 2 3 22 22 H 1.07999 * 119.99886 * 180.02562 * 1 2 3 23 23 H 1.08007 * 120.00312 * 179.97438 * 2 1 3 24 24 H 1.08989 * 109.47039 * 5.00082 * 3 2 1 25 25 H 1.09002 * 109.46802 * 244.99700 * 3 2 1 26 26 H 1.09002 * 109.46528 * 280.46913 * 5 4 3 27 27 H 1.09006 * 109.47064 * 40.46378 * 5 4 3 28 28 H 0.96999 * 120.00207 * 180.02562 * 9 8 6 29 29 H 1.09002 * 109.46965 * 173.95476 * 14 4 3 30 30 H 1.08993 * 109.47206 * 53.94889 * 14 4 3 31 31 H 1.08004 * 125.99136 * 0.02956 * 16 15 14 32 32 H 1.08002 * 125.64966 * 180.29052 * 18 17 16 33 33 H 1.09001 * 109.47059 * 269.69342 * 20 19 18 34 34 H 1.08999 * 109.47296 * 149.68968 * 20 19 18 35 35 H 1.09001 * 109.46782 * 29.68508 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9963 1.3320 1.1345 5 6 2.2745 1.4704 2.4065 6 6 3.1620 1.0227 3.5390 7 1 4.1422 0.6203 3.3303 8 6 2.7225 1.1266 4.8417 9 7 1.5289 1.6169 5.0959 10 14 3.8224 0.5710 6.2456 11 1 5.1048 0.0610 5.6977 12 1 4.0910 1.7193 7.1483 13 1 3.1454 -0.5093 7.0071 14 6 3.9898 2.4021 0.9740 15 6 4.8723 2.0950 -0.2085 16 6 4.7115 2.5436 -1.4680 17 7 5.7048 2.0422 -2.2170 18 6 6.4784 1.3048 -1.4681 19 7 5.9909 1.3061 -0.2087 20 6 6.5570 0.6002 0.9434 21 1 -0.5399 0.9354 -0.0004 22 1 -0.5400 -0.9353 0.0004 23 1 1.8501 -0.9353 0.0004 24 1 1.3586 2.1316 0.0896 25 1 2.6213 1.4026 -0.9314 26 1 1.9953 2.5137 2.5541 27 1 1.3759 0.8536 2.3832 28 1 1.2198 1.6904 6.0124 29 1 4.5999 2.4696 1.8747 30 1 3.4788 3.3506 0.8092 31 1 3.9213 3.1932 -1.8144 32 1 7.3608 0.7784 -1.8009 33 1 6.1187 -0.3955 1.0107 34 1 6.3368 1.1566 1.8545 35 1 7.6369 0.5143 0.8221 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292161062.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:00 Heat of formation + Delta-G solvation = 87.230708 kcal Electronic energy + Delta-G solvation = -16694.809855 eV Core-core repulsion = 14115.712823 eV Total energy + Delta-G solvation = -2579.097032 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.74863 -37.09394 -33.71487 -33.16080 -32.48589 -29.96549 -27.23772 -26.66514 -25.84212 -23.63753 -21.10005 -20.97019 -19.44678 -19.08529 -16.69748 -16.47503 -15.59246 -15.07508 -14.51771 -14.30819 -14.06773 -13.73432 -13.37974 -12.97199 -12.57416 -12.56190 -12.33832 -12.09106 -11.48066 -11.30293 -11.15990 -10.74391 -10.65572 -10.46393 -10.04712 -9.62619 -9.33332 -9.22567 -8.83720 -8.48437 -8.01429 -7.35293 -6.08355 -4.10449 2.36374 2.82389 3.14648 3.24238 3.32217 3.34227 3.44929 4.35890 4.92756 4.98358 5.03599 5.15529 5.26716 5.44034 5.51011 5.68724 5.70285 5.74755 5.82270 6.05705 6.10217 6.22151 6.30377 6.41591 6.75618 7.04755 7.10486 7.19245 7.21935 7.32612 7.50910 7.74956 8.04269 8.11073 8.35989 8.46570 8.96761 9.53782 11.01997 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.020321 B = 0.008500 C = 0.006546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.534693 B = 3293.148299 C = 4276.549987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.119 4.119 3 C 0.074 3.926 4 N -0.529 5.529 5 C 0.192 3.808 6 C -0.506 4.506 7 H 0.061 0.939 8 C 0.056 3.944 9 N -0.896 5.896 10 Si 0.895 3.105 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.284 1.284 14 C 0.131 3.869 15 C 0.010 3.990 16 C -0.042 4.042 17 N -0.498 5.498 18 C 0.163 3.837 19 N -0.446 5.446 20 C 0.075 3.925 21 H 0.091 0.909 22 H 0.092 0.908 23 H 0.106 0.894 24 H 0.029 0.971 25 H 0.075 0.925 26 H -0.004 1.004 27 H 0.035 0.965 28 H 0.261 0.739 29 H 0.090 0.910 30 H 0.047 0.953 31 H 0.162 0.838 32 H 0.198 0.802 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.383 -1.099 -8.381 10.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.138 4.138 3 C -0.054 4.054 4 N -0.254 5.254 5 C 0.067 3.933 6 C -0.544 4.544 7 H 0.079 0.921 8 C -0.146 4.146 9 N -0.536 5.536 10 Si 0.723 3.277 11 H -0.198 1.198 12 H -0.211 1.211 13 H -0.210 1.210 14 C 0.002 3.998 15 C -0.106 4.106 16 C -0.191 4.191 17 N -0.217 5.217 18 C -0.119 4.119 19 N -0.128 5.128 20 C -0.067 4.067 21 H 0.109 0.891 22 H 0.110 0.890 23 H 0.124 0.876 24 H 0.047 0.953 25 H 0.093 0.907 26 H 0.013 0.987 27 H 0.053 0.947 28 H 0.071 0.929 29 H 0.108 0.892 30 H 0.065 0.935 31 H 0.179 0.821 32 H 0.215 0.785 33 H 0.099 0.901 34 H 0.110 0.890 35 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 6.693 -1.441 -8.916 11.241 hybrid contribution -0.060 0.179 1.809 1.818 sum 6.633 -1.262 -7.107 9.803 Atomic orbital electron populations 1.23678 0.95965 1.01159 1.03661 1.22810 0.95311 0.98655 0.96992 1.21259 0.94420 0.94167 0.95518 1.62107 1.15585 1.44391 1.03310 1.19792 0.93995 0.95733 0.83786 1.21145 1.02103 1.41108 0.90077 0.92095 1.24990 0.95210 0.95506 0.98870 1.69964 1.17877 1.45790 1.19921 0.86498 0.80629 0.78325 0.82261 1.19777 1.21110 1.21019 1.20382 0.92852 0.93044 0.93550 1.21486 0.91574 0.98964 0.98626 1.21952 1.00815 1.06520 0.89796 1.70182 1.05655 1.12822 1.33016 1.24739 1.02323 1.04300 0.80554 1.45217 1.21265 1.36289 1.10027 1.22028 0.98420 0.98385 0.87875 0.89099 0.89002 0.87641 0.95292 0.90703 0.98664 0.94709 0.92934 0.89217 0.93527 0.82059 0.78486 0.90092 0.89034 0.90317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.38 14.32 29.02 0.42 -2.97 16 2 C -0.12 -2.13 8.71 -36.02 -0.31 -2.44 16 3 C 0.07 1.36 5.28 -4.97 -0.03 1.34 16 4 N -0.53 -10.88 4.37 -238.96 -1.04 -11.93 16 5 C 0.19 4.77 4.59 -4.98 -0.02 4.75 16 6 C -0.51 -13.44 8.55 -34.44 -0.29 -13.73 16 7 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 8 C 0.06 1.52 5.46 -17.82 -0.10 1.42 16 9 N -0.90 -25.93 13.29 55.43 0.74 -25.20 16 10 Si 0.89 20.78 29.54 -169.99 -5.02 15.76 16 11 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 13 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 14 C 0.13 2.42 5.03 -4.98 -0.03 2.39 16 15 C 0.01 0.17 5.74 -81.60 -0.47 -0.30 16 16 C -0.04 -0.71 10.41 -17.82 -0.19 -0.89 16 17 N -0.50 -8.38 11.25 -14.67 -0.17 -8.54 16 18 C 0.16 2.32 12.56 -90.37 -1.14 1.19 16 19 N -0.45 -6.67 3.15 -121.36 -0.38 -7.05 16 20 C 0.08 0.93 11.01 59.85 0.66 1.59 16 21 H 0.09 1.44 7.84 -52.49 -0.41 1.03 16 22 H 0.09 1.34 8.06 -52.49 -0.42 0.92 16 23 H 0.11 1.88 8.06 -52.48 -0.42 1.46 16 24 H 0.03 0.53 7.71 -51.94 -0.40 0.13 16 25 H 0.07 1.31 5.86 -51.93 -0.30 1.01 16 26 H 0.00 -0.12 8.00 -51.93 -0.42 -0.54 16 27 H 0.03 0.94 7.09 -51.93 -0.37 0.57 16 28 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 29 H 0.09 1.75 6.67 -51.93 -0.35 1.41 16 30 H 0.05 0.84 8.12 -51.93 -0.42 0.42 16 31 H 0.16 2.42 8.06 -52.48 -0.42 2.00 16 32 H 0.20 1.99 8.06 -52.49 -0.42 1.56 16 33 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.09 1.24 7.30 -51.93 -0.38 0.86 16 35 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 297.81 15.07 4.49 4.49 Total: -1.00 -30.55 297.81 -8.01 -38.56 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -5.13 Total: 1.57 kcal Atomic # 6 Polarization: -6.16 SS G_CDS: -1.49 Total: -7.65 kcal Atomic # 7 Polarization: -51.86 SS G_CDS: -0.85 Total: -52.72 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.55 -8.01 -38.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292161062.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.791 kcal (2) G-P(sol) polarization free energy of solvation -30.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds