Wall clock time and date at job start Sun Mar 29 2020 22:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50707 * 119.99985 * 2 1 4 4 N 1.46900 * 109.47208 * 125.00152 * 3 2 1 5 5 C 1.46906 * 110.99904 * 288.79636 * 4 3 2 6 6 C 1.50692 * 109.47154 * 160.46868 * 5 4 3 7 7 H 1.07998 * 120.00176 * 356.67239 * 6 5 4 8 8 C 1.37879 * 119.99794 * 176.68332 * 6 5 4 9 9 N 1.31518 * 120.00091 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99922 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.47274 * 359.97438 * 10 8 6 12 12 H 1.48507 * 109.47245 * 119.99670 * 10 8 6 13 13 H 1.48499 * 109.47040 * 239.99423 * 10 8 6 14 14 C 1.46896 * 111.00201 * 164.84140 * 4 3 2 15 15 C 1.50706 * 109.47040 * 293.95159 * 14 4 3 16 16 C 1.34663 * 126.59153 * 94.96021 * 15 14 4 17 17 N 1.34124 * 108.02127 * 180.02562 * 16 15 14 18 18 C 1.30499 * 109.25530 * 359.71822 * 17 16 15 19 19 N 1.35044 * 108.69989 * 0.44800 * 18 17 16 20 20 C 1.46499 * 126.39891 * 179.82204 * 19 18 17 21 21 H 1.08002 * 119.99478 * 0.02562 * 1 2 3 22 22 H 1.07999 * 119.99886 * 180.02562 * 1 2 3 23 23 H 1.08007 * 120.00312 * 179.97438 * 2 1 3 24 24 H 1.08989 * 109.47039 * 5.00082 * 3 2 1 25 25 H 1.09002 * 109.46802 * 244.99700 * 3 2 1 26 26 H 1.09002 * 109.46528 * 280.46913 * 5 4 3 27 27 H 1.09006 * 109.47064 * 40.46378 * 5 4 3 28 28 H 0.96999 * 120.00207 * 180.02562 * 9 8 6 29 29 H 1.09002 * 109.46965 * 173.95476 * 14 4 3 30 30 H 1.08993 * 109.47206 * 53.94889 * 14 4 3 31 31 H 1.08004 * 125.99136 * 0.02956 * 16 15 14 32 32 H 1.08002 * 125.64966 * 180.29052 * 18 17 16 33 33 H 1.09001 * 109.47059 * 269.69342 * 20 19 18 34 34 H 1.08999 * 109.47296 * 149.68968 * 20 19 18 35 35 H 1.09001 * 109.46782 * 29.68508 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9963 1.3320 1.1345 5 6 2.2745 1.4704 2.4065 6 6 3.1620 1.0227 3.5390 7 1 4.1422 0.6203 3.3303 8 6 2.7225 1.1266 4.8417 9 7 1.5289 1.6169 5.0959 10 14 3.8224 0.5710 6.2456 11 1 5.1048 0.0610 5.6977 12 1 4.0910 1.7193 7.1483 13 1 3.1454 -0.5093 7.0071 14 6 3.9898 2.4021 0.9740 15 6 4.8723 2.0950 -0.2085 16 6 4.7115 2.5436 -1.4680 17 7 5.7048 2.0422 -2.2170 18 6 6.4784 1.3048 -1.4681 19 7 5.9909 1.3061 -0.2087 20 6 6.5570 0.6002 0.9434 21 1 -0.5399 0.9354 -0.0004 22 1 -0.5400 -0.9353 0.0004 23 1 1.8501 -0.9353 0.0004 24 1 1.3586 2.1316 0.0896 25 1 2.6213 1.4026 -0.9314 26 1 1.9953 2.5137 2.5541 27 1 1.3759 0.8536 2.3832 28 1 1.2198 1.6904 6.0124 29 1 4.5999 2.4696 1.8747 30 1 3.4788 3.3506 0.8092 31 1 3.9213 3.1932 -1.8144 32 1 7.3608 0.7784 -1.8009 33 1 6.1187 -0.3955 1.0107 34 1 6.3368 1.1566 1.8545 35 1 7.6369 0.5143 0.8221 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292161062.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:00 Heat of formation + Delta-G solvation = 69.040587 kcal Electronic energy + Delta-G solvation = -16695.598637 eV Core-core repulsion = 14115.712823 eV Total energy + Delta-G solvation = -2579.885815 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.95305 -38.71593 -35.01621 -34.80680 -34.14884 -31.45085 -29.08120 -27.72685 -27.26658 -25.44720 -22.67166 -22.28288 -20.74178 -20.51119 -18.52657 -17.86622 -17.07901 -16.51148 -16.21996 -15.78978 -15.50452 -15.13794 -14.77925 -14.28322 -14.07538 -13.98542 -13.66250 -13.39405 -13.20194 -12.93159 -12.74273 -12.50374 -12.45791 -12.06664 -11.80219 -11.31619 -10.88362 -10.61325 -10.40764 -10.22352 -9.31265 -9.03587 -8.17190 -6.27050 1.12676 1.41548 1.42502 1.45446 1.54676 2.03922 2.22714 2.41464 3.15703 3.42407 3.80225 3.95594 4.06542 4.11924 4.24851 4.34146 4.46366 4.52226 4.60204 4.69682 4.75624 4.84116 4.89639 5.04350 5.18943 5.27619 5.52994 5.66552 5.72931 5.79965 5.86786 6.11049 6.31142 6.41748 6.58565 6.88671 7.16627 7.42455 8.93487 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.020321 B = 0.008500 C = 0.006546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.534693 B = 3293.148299 C = 4276.549987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.143 4.143 3 C 0.079 3.921 4 N -0.530 5.530 5 C 0.210 3.790 6 C -0.514 4.514 7 H 0.066 0.934 8 C 0.002 3.998 9 N -0.935 5.935 10 Si 0.964 3.036 11 H -0.257 1.257 12 H -0.282 1.282 13 H -0.283 1.283 14 C 0.139 3.861 15 C -0.010 4.010 16 C -0.045 4.045 17 N -0.529 5.529 18 C 0.181 3.819 19 N -0.449 5.449 20 C 0.074 3.926 21 H 0.094 0.906 22 H 0.112 0.888 23 H 0.105 0.895 24 H 0.024 0.976 25 H 0.085 0.915 26 H -0.035 1.035 27 H 0.009 0.991 28 H 0.262 0.738 29 H 0.075 0.925 30 H 0.046 0.954 31 H 0.169 0.831 32 H 0.242 0.758 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.169 -2.134 -8.792 12.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.162 4.162 3 C -0.049 4.049 4 N -0.254 5.254 5 C 0.084 3.916 6 C -0.552 4.552 7 H 0.084 0.916 8 C -0.196 4.196 9 N -0.576 5.576 10 Si 0.789 3.211 11 H -0.181 1.181 12 H -0.208 1.208 13 H -0.210 1.210 14 C 0.010 3.990 15 C -0.127 4.127 16 C -0.193 4.193 17 N -0.248 5.248 18 C -0.102 4.102 19 N -0.131 5.131 20 C -0.068 4.068 21 H 0.112 0.888 22 H 0.130 0.870 23 H 0.123 0.877 24 H 0.043 0.957 25 H 0.103 0.897 26 H -0.017 1.017 27 H 0.027 0.973 28 H 0.071 0.929 29 H 0.093 0.907 30 H 0.064 0.936 31 H 0.186 0.814 32 H 0.258 0.742 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 8.492 -2.480 -9.340 12.865 hybrid contribution -0.619 0.499 1.856 2.019 sum 7.873 -1.982 -7.484 11.042 Atomic orbital electron populations 1.23907 0.95599 1.02323 1.01310 1.22829 0.95955 0.98241 0.99158 1.21255 0.94129 0.94538 0.94943 1.62036 1.15747 1.45314 1.02302 1.19403 0.93280 0.93097 0.85848 1.21454 1.02345 1.40631 0.90773 0.91603 1.25879 0.96530 0.95522 1.01684 1.70098 1.19816 1.47158 1.20559 0.85411 0.79238 0.77758 0.78689 1.18052 1.20801 1.20951 1.20200 0.92405 0.92431 0.93937 1.21142 0.92720 1.00920 0.97871 1.22136 1.01080 1.06373 0.89736 1.70210 1.06459 1.14322 1.33822 1.25607 1.02356 1.02485 0.79715 1.45402 1.20678 1.35953 1.11061 1.22186 1.00852 0.97334 0.86432 0.88805 0.86954 0.87711 0.95746 0.89656 1.01724 0.97276 0.92869 0.90697 0.93639 0.81402 0.74192 0.90507 0.90693 0.86137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -6.19 14.32 67.78 0.97 -5.22 16 2 C -0.14 -5.09 8.71 25.65 0.22 -4.86 16 3 C 0.08 2.92 5.28 85.56 0.45 3.37 16 4 N -0.53 -22.13 4.37 -909.93 -3.97 -26.11 16 5 C 0.21 10.76 4.59 85.55 0.39 11.16 16 6 C -0.51 -27.61 8.55 25.60 0.22 -27.39 16 7 H 0.07 3.40 7.81 -2.91 -0.02 3.38 16 8 C 0.00 0.09 5.46 84.65 0.46 0.55 16 9 N -0.94 -55.14 13.29 21.45 0.28 -54.85 16 10 Si 0.96 42.46 29.54 68.60 2.03 44.48 16 11 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 12 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 13 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 14 C 0.14 5.22 5.03 85.56 0.43 5.65 16 15 C -0.01 -0.32 5.74 40.95 0.24 -0.09 16 16 C -0.04 -1.46 10.41 83.52 0.87 -0.59 16 17 N -0.53 -16.77 11.25 -200.31 -2.25 -19.02 16 18 C 0.18 4.60 12.56 180.26 2.26 6.87 16 19 N -0.45 -12.53 3.15 -537.88 -1.70 -14.23 16 20 C 0.07 1.65 11.01 127.77 1.41 3.06 16 21 H 0.09 2.92 7.84 -2.91 -0.02 2.90 16 22 H 0.11 3.10 8.06 -2.91 -0.02 3.08 16 23 H 0.10 3.70 8.06 -2.91 -0.02 3.68 16 24 H 0.02 0.92 7.71 -2.39 -0.02 0.90 16 25 H 0.09 2.97 5.86 -2.39 -0.01 2.95 16 26 H -0.03 -1.97 8.00 -2.39 -0.02 -1.99 16 27 H 0.01 0.51 7.09 -2.38 -0.02 0.50 16 28 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 29 H 0.07 3.00 6.67 -2.39 -0.02 2.98 16 30 H 0.05 1.69 8.12 -2.39 -0.02 1.67 16 31 H 0.17 4.97 8.06 -2.91 -0.02 4.95 16 32 H 0.24 3.69 8.06 -2.91 -0.02 3.67 16 33 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.07 1.95 7.30 -2.39 -0.02 1.93 16 35 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -65.79 297.81 3.36 -62.43 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: 1.05 Total: 14.80 kcal Atomic # 6 Polarization: -15.43 SS G_CDS: 7.93 Total: -7.50 kcal Atomic # 7 Polarization: -106.57 SS G_CDS: -7.64 Total: -114.21 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.48 kcal Total: -65.79 3.36 -62.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292161062.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.467 kcal (2) G-P(sol) polarization free energy of solvation -65.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds