Wall clock time and date at job start Sun Mar 29 2020 22:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47292 * 2 1 4 4 N 1.46491 * 109.47361 * 180.02562 * 3 2 1 5 5 C 1.36929 * 120.00435 * 269.70006 * 4 3 2 6 6 H 1.08003 * 119.99975 * 322.04003 * 5 4 3 7 7 C 1.38817 * 120.00580 * 142.03923 * 5 4 3 8 8 N 1.31617 * 120.00300 * 157.07706 * 7 5 4 9 9 Si 1.86801 * 119.99717 * 337.07998 * 7 5 4 10 10 H 1.48495 * 109.47416 * 95.69415 * 9 7 5 11 11 H 1.48503 * 109.46993 * 215.69833 * 9 7 5 12 12 H 1.48503 * 109.47057 * 335.69535 * 9 7 5 13 13 C 1.46501 * 119.99843 * 89.69831 * 4 3 2 14 14 C 1.50706 * 109.47054 * 90.00044 * 13 4 3 15 15 C 1.38622 * 120.44841 * 94.99848 * 14 13 4 16 16 C 1.38572 * 118.40001 * 179.97438 * 15 14 13 17 17 C 1.50697 * 120.44621 * 180.02562 * 16 15 14 18 18 N 1.32343 * 119.10699 * 0.02562 * 16 15 14 19 19 C 1.31780 * 120.81812 * 359.97438 * 18 16 15 20 20 N 1.31813 * 121.75452 * 0.02562 * 19 18 16 21 21 H 1.09003 * 109.47174 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47066 * 299.99878 * 1 2 3 23 23 H 1.08995 * 109.47550 * 59.99813 * 1 2 3 24 24 H 1.09001 * 109.47066 * 240.00122 * 2 1 3 25 25 H 1.08995 * 109.47550 * 120.00187 * 2 1 3 26 26 H 1.09001 * 109.46965 * 60.00061 * 3 2 1 27 27 H 1.09003 * 109.47261 * 300.00508 * 3 2 1 28 28 H 0.97002 * 120.00029 * 180.02562 * 8 7 5 29 29 H 1.09000 * 109.47565 * 330.00098 * 13 4 3 30 30 H 1.09004 * 109.47553 * 209.99599 * 13 4 3 31 31 H 1.08010 * 120.79882 * 0.25656 * 15 14 13 32 32 H 1.08996 * 109.47323 * 90.00253 * 17 16 15 33 33 H 1.09005 * 109.47357 * 210.00233 * 17 16 15 34 34 H 1.09001 * 109.47617 * 330.00055 * 17 16 15 35 35 H 1.08002 * 119.12751 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.1902 1.4486 1.1849 6 1 3.8219 2.0281 2.0185 7 6 5.3581 0.7098 1.3153 8 7 6.2449 1.0368 2.2313 9 14 5.6713 -0.7485 0.1908 10 1 6.5092 -0.3176 -0.9570 11 1 6.3775 -1.8139 0.9468 12 1 4.3761 -1.2734 -0.3115 13 6 4.2369 1.4361 -1.2697 14 6 4.4878 2.8547 -1.7121 15 6 5.6851 3.4839 -1.4084 16 6 5.8712 4.7886 -1.8365 17 6 7.1552 5.5163 -1.5323 18 7 4.9060 5.3870 -2.5161 19 6 3.7804 4.7573 -2.7866 20 7 3.5684 3.5165 -2.3956 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 1.6767 1.9563 0.8900 27 1 1.6766 1.9564 -0.8900 28 1 7.0612 0.5208 2.3222 29 1 3.6475 0.9184 -2.0265 30 1 5.1894 0.9230 -1.1372 31 1 6.4562 2.9680 -0.8554 32 1 7.8692 5.3457 -2.3380 33 1 6.9555 6.5843 -1.4439 34 1 7.5698 5.1455 -0.5949 35 1 3.0111 5.2716 -3.3435 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292307869.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:39 Heat of formation + Delta-G solvation = 56.642682 kcal Electronic energy + Delta-G solvation = -16799.261795 eV Core-core repulsion = 14218.838367 eV Total energy + Delta-G solvation = -2580.423428 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.46113 -36.63146 -33.96001 -33.10407 -32.21867 -30.95757 -28.39478 -26.56541 -25.78995 -23.55832 -22.37247 -21.26829 -19.88596 -17.30084 -16.76684 -15.84099 -15.17436 -14.84661 -14.74589 -14.30103 -14.05240 -13.39573 -12.90194 -12.70616 -12.61810 -12.49672 -12.45770 -12.12236 -11.56877 -11.24686 -10.85727 -10.73587 -10.58174 -10.43775 -10.11959 -9.94014 -9.78339 -9.59703 -8.89079 -8.79089 -8.61114 -6.98781 -6.13679 -3.53939 1.50703 1.59911 3.19390 3.38525 3.44206 4.22955 4.39961 4.47618 4.66070 4.92800 5.07921 5.20120 5.48785 5.63515 5.67043 5.72538 5.73934 5.79374 5.95611 5.97870 6.14216 6.18238 6.21679 6.31282 6.42731 6.47592 6.55106 6.56725 6.88511 6.98778 7.07780 7.61320 7.91008 8.27793 8.64928 8.83440 9.56119 9.97847 11.01151 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.019161 B = 0.010624 C = 0.007698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.917460 B = 2634.899124 C = 3636.395897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.144 4.144 3 C 0.151 3.849 4 N -0.589 5.589 5 C -0.269 4.269 6 H 0.079 0.921 7 C 0.041 3.959 8 N -0.891 5.891 9 Si 0.866 3.134 10 H -0.284 1.284 11 H -0.298 1.298 12 H -0.262 1.262 13 C 0.178 3.822 14 C 0.176 3.824 15 C -0.201 4.201 16 C 0.161 3.839 17 C -0.102 4.102 18 N -0.539 5.539 19 C 0.281 3.719 20 N -0.523 5.523 21 H 0.044 0.956 22 H 0.050 0.950 23 H 0.047 0.953 24 H 0.050 0.950 25 H 0.063 0.937 26 H 0.050 0.950 27 H 0.048 0.952 28 H 0.265 0.735 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.144 0.856 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.789 2.961 -7.947 8.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.184 4.184 3 C 0.025 3.975 4 N -0.310 5.310 5 C -0.398 4.398 6 H 0.097 0.903 7 C -0.161 4.161 8 N -0.530 5.530 9 Si 0.695 3.305 10 H -0.212 1.212 11 H -0.225 1.225 12 H -0.186 1.186 13 C 0.051 3.949 14 C 0.028 3.972 15 C -0.224 4.224 16 C 0.016 3.984 17 C -0.160 4.160 18 N -0.256 5.256 19 C -0.007 4.007 20 N -0.239 5.239 21 H 0.063 0.937 22 H 0.069 0.931 23 H 0.067 0.933 24 H 0.068 0.932 25 H 0.082 0.918 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.162 0.838 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -3.341 3.364 -8.306 9.564 hybrid contribution 0.938 -1.213 0.009 1.534 sum -2.403 2.151 -8.296 8.901 Atomic orbital electron populations 1.21716 0.97056 1.00534 1.01105 1.22093 0.93966 1.00471 1.01843 1.20991 0.83092 0.93729 0.99661 1.44087 1.00951 1.84909 1.01004 1.18810 1.06300 1.24230 0.90472 0.90322 1.25471 0.96676 0.97495 0.96450 1.69885 1.08276 1.39022 1.35856 0.87098 0.78531 0.84767 0.80099 1.21196 1.22524 1.18607 1.20348 0.97796 0.87698 0.89059 1.23082 0.87668 0.99641 0.86827 1.22672 1.00627 0.96510 1.02560 1.21601 0.94791 0.91372 0.90628 1.20717 0.92209 1.00536 1.02509 1.68131 1.02574 1.38958 1.15943 1.24726 0.93177 0.88279 0.94562 1.68252 1.33222 1.09535 1.12854 0.93698 0.93122 0.93344 0.93157 0.91788 0.93198 0.93347 0.92497 0.91856 0.91113 0.83785 0.90386 0.90508 0.90059 0.79785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.91 37.16 0.37 -1.76 16 2 C -0.14 -2.63 6.26 -26.73 -0.17 -2.80 16 3 C 0.15 3.04 5.67 -4.04 -0.02 3.02 16 4 N -0.59 -13.70 2.05 -174.61 -0.36 -14.06 16 5 C -0.27 -7.22 9.90 -15.06 -0.15 -7.37 16 6 H 0.08 2.32 8.06 -52.48 -0.42 1.90 16 7 C 0.04 1.11 5.29 -17.43 -0.09 1.02 16 8 N -0.89 -25.68 13.97 55.49 0.78 -24.90 16 9 Si 0.87 20.84 25.10 -169.99 -4.27 16.57 16 10 H -0.28 -6.57 6.68 56.52 0.38 -6.19 16 11 H -0.30 -7.33 7.11 56.52 0.40 -6.93 16 12 H -0.26 -6.17 7.11 56.52 0.40 -5.77 16 13 C 0.18 3.86 4.87 -5.19 -0.03 3.83 16 14 C 0.18 3.66 6.41 -82.24 -0.53 3.13 16 15 C -0.20 -4.01 9.52 -39.32 -0.37 -4.38 16 16 C 0.16 2.86 6.82 -82.25 -0.56 2.30 16 17 C -0.10 -1.40 10.22 36.00 0.37 -1.03 16 18 N -0.54 -9.60 10.38 -10.80 -0.11 -9.71 16 19 C 0.28 4.84 12.29 -92.15 -1.13 3.71 16 20 N -0.52 -10.15 10.38 -10.79 -0.11 -10.26 16 21 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 22 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 23 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 26 H 0.05 1.02 8.04 -51.93 -0.42 0.61 16 27 H 0.05 0.93 8.07 -51.93 -0.42 0.52 16 28 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 29 H 0.06 1.27 8.07 -51.93 -0.42 0.85 16 30 H 0.07 1.61 3.30 -51.93 -0.17 1.44 16 31 H 0.14 2.93 8.06 -52.48 -0.42 2.51 16 32 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.08 1.08 8.10 -51.93 -0.42 0.66 16 35 H 0.19 2.44 8.06 -52.49 -0.42 2.02 16 LS Contribution 294.97 15.07 4.45 4.45 Total: -1.00 -29.46 294.97 -7.18 -36.64 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -5.23 Total: 1.60 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: -2.32 Total: -0.33 kcal Atomic # 7 Polarization: -59.12 SS G_CDS: 0.19 Total: -58.93 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.27 Total: 16.57 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -29.46 -7.18 -36.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292307869.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.285 kcal (2) G-P(sol) polarization free energy of solvation -29.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds