Wall clock time and date at job start Sun Mar 29 2020 22:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47292 * 2 1 4 4 N 1.46491 * 109.47361 * 180.02562 * 3 2 1 5 5 C 1.36929 * 120.00435 * 269.70006 * 4 3 2 6 6 H 1.08003 * 119.99975 * 322.04003 * 5 4 3 7 7 C 1.38817 * 120.00580 * 142.03923 * 5 4 3 8 8 N 1.31617 * 120.00300 * 157.07706 * 7 5 4 9 9 Si 1.86801 * 119.99717 * 337.07998 * 7 5 4 10 10 H 1.48495 * 109.47416 * 95.69415 * 9 7 5 11 11 H 1.48503 * 109.46993 * 215.69833 * 9 7 5 12 12 H 1.48503 * 109.47057 * 335.69535 * 9 7 5 13 13 C 1.46501 * 119.99843 * 89.69831 * 4 3 2 14 14 C 1.50706 * 109.47054 * 90.00044 * 13 4 3 15 15 C 1.38622 * 120.44841 * 94.99848 * 14 13 4 16 16 C 1.38572 * 118.40001 * 179.97438 * 15 14 13 17 17 C 1.50697 * 120.44621 * 180.02562 * 16 15 14 18 18 N 1.32343 * 119.10699 * 0.02562 * 16 15 14 19 19 C 1.31780 * 120.81812 * 359.97438 * 18 16 15 20 20 N 1.31813 * 121.75452 * 0.02562 * 19 18 16 21 21 H 1.09003 * 109.47174 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47066 * 299.99878 * 1 2 3 23 23 H 1.08995 * 109.47550 * 59.99813 * 1 2 3 24 24 H 1.09001 * 109.47066 * 240.00122 * 2 1 3 25 25 H 1.08995 * 109.47550 * 120.00187 * 2 1 3 26 26 H 1.09001 * 109.46965 * 60.00061 * 3 2 1 27 27 H 1.09003 * 109.47261 * 300.00508 * 3 2 1 28 28 H 0.97002 * 120.00029 * 180.02562 * 8 7 5 29 29 H 1.09000 * 109.47565 * 330.00098 * 13 4 3 30 30 H 1.09004 * 109.47553 * 209.99599 * 13 4 3 31 31 H 1.08010 * 120.79882 * 0.25656 * 15 14 13 32 32 H 1.08996 * 109.47323 * 90.00253 * 17 16 15 33 33 H 1.09005 * 109.47357 * 210.00233 * 17 16 15 34 34 H 1.09001 * 109.47617 * 330.00055 * 17 16 15 35 35 H 1.08002 * 119.12751 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.1902 1.4486 1.1849 6 1 3.8219 2.0281 2.0185 7 6 5.3581 0.7098 1.3153 8 7 6.2449 1.0368 2.2313 9 14 5.6713 -0.7485 0.1908 10 1 6.5092 -0.3176 -0.9570 11 1 6.3775 -1.8139 0.9468 12 1 4.3761 -1.2734 -0.3115 13 6 4.2369 1.4361 -1.2697 14 6 4.4878 2.8547 -1.7121 15 6 5.6851 3.4839 -1.4084 16 6 5.8712 4.7886 -1.8365 17 6 7.1552 5.5163 -1.5323 18 7 4.9060 5.3870 -2.5161 19 6 3.7804 4.7573 -2.7866 20 7 3.5684 3.5165 -2.3956 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 1.6767 1.9563 0.8900 27 1 1.6766 1.9564 -0.8900 28 1 7.0612 0.5208 2.3222 29 1 3.6475 0.9184 -2.0265 30 1 5.1894 0.9230 -1.1372 31 1 6.4562 2.9680 -0.8554 32 1 7.8692 5.3457 -2.3380 33 1 6.9555 6.5843 -1.4439 34 1 7.5698 5.1455 -0.5949 35 1 3.0111 5.2716 -3.3435 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292307869.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:39 Heat of formation + Delta-G solvation = 39.644951 kcal Electronic energy + Delta-G solvation = -16799.998872 eV Core-core repulsion = 14218.838367 eV Total energy + Delta-G solvation = -2581.160505 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.91658 -38.36245 -35.38514 -34.69788 -33.94040 -32.64768 -29.75471 -28.09939 -27.56419 -25.00834 -24.02220 -22.74856 -21.53281 -19.11782 -18.34557 -17.44983 -16.91380 -16.43346 -16.28717 -15.76921 -15.63690 -15.01234 -14.50853 -14.39646 -14.05573 -14.03757 -13.76118 -13.37739 -13.03441 -12.85849 -12.51083 -12.32331 -12.21729 -12.12116 -11.78999 -11.56788 -11.39741 -11.19667 -10.69726 -10.38328 -10.22155 -8.88071 -8.24372 -5.63724 0.05428 0.10947 1.27134 1.41374 1.52000 2.37619 2.73368 3.07139 3.17914 3.23338 3.40020 3.56583 4.13120 4.17435 4.22140 4.30973 4.41609 4.56385 4.60082 4.66374 4.70173 4.75041 4.79593 4.92645 4.98626 5.09181 5.16607 5.25441 5.39971 5.56538 5.56717 5.89797 6.11482 6.16676 6.88934 7.19762 7.53440 7.98001 8.94654 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.019161 B = 0.010624 C = 0.007698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.917460 B = 2634.899124 C = 3636.395897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.138 4.138 3 C 0.151 3.849 4 N -0.600 5.600 5 C -0.262 4.262 6 H 0.037 0.963 7 C -0.002 4.002 8 N -0.936 5.936 9 Si 0.924 3.076 10 H -0.269 1.269 11 H -0.305 1.305 12 H -0.252 1.252 13 C 0.179 3.821 14 C 0.162 3.838 15 C -0.225 4.225 16 C 0.165 3.835 17 C -0.100 4.100 18 N -0.541 5.541 19 C 0.284 3.716 20 N -0.533 5.533 21 H 0.061 0.939 22 H 0.053 0.947 23 H 0.063 0.937 24 H 0.050 0.950 25 H 0.040 0.960 26 H 0.038 0.962 27 H 0.061 0.939 28 H 0.266 0.734 29 H 0.081 0.919 30 H 0.058 0.942 31 H 0.131 0.869 32 H 0.103 0.897 33 H 0.090 0.910 34 H 0.081 0.919 35 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.570 3.303 -10.133 11.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.178 4.178 3 C 0.026 3.974 4 N -0.321 5.321 5 C -0.392 4.392 6 H 0.054 0.946 7 C -0.201 4.201 8 N -0.578 5.578 9 Si 0.752 3.248 10 H -0.196 1.196 11 H -0.233 1.233 12 H -0.176 1.176 13 C 0.052 3.948 14 C 0.015 3.985 15 C -0.248 4.248 16 C 0.020 3.980 17 C -0.157 4.157 18 N -0.258 5.258 19 C -0.004 4.004 20 N -0.249 5.249 21 H 0.080 0.920 22 H 0.072 0.928 23 H 0.082 0.918 24 H 0.069 0.931 25 H 0.059 0.941 26 H 0.056 0.944 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.099 0.901 30 H 0.076 0.924 31 H 0.149 0.851 32 H 0.121 0.879 33 H 0.109 0.891 34 H 0.100 0.900 35 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -4.152 3.711 -10.524 11.907 hybrid contribution 1.140 -1.161 0.650 1.753 sum -3.011 2.550 -9.874 10.633 Atomic orbital electron populations 1.21646 0.93919 1.01992 1.02034 1.21983 0.96701 0.98425 1.00641 1.21069 0.81474 0.95198 0.99636 1.44134 1.02056 1.85482 1.00426 1.18543 1.06369 1.23252 0.91011 0.94567 1.25944 0.96463 0.99493 0.98157 1.69990 1.09076 1.40353 1.38385 0.86148 0.78849 0.81098 0.78715 1.19586 1.23316 1.17591 1.20283 0.97225 0.88709 0.88555 1.22891 0.88519 0.99266 0.87848 1.22695 1.00517 0.97834 1.03782 1.22169 0.96056 0.90669 0.89131 1.20827 0.90706 1.00762 1.03402 1.68291 1.02771 1.38754 1.15957 1.25569 0.93767 0.87620 0.93471 1.68265 1.32857 1.10550 1.13250 0.91998 0.92798 0.91830 0.93133 0.94143 0.94379 0.92062 0.92497 0.90106 0.92416 0.85125 0.87900 0.89110 0.90028 0.75782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.69 9.91 71.98 0.71 -2.97 16 2 C -0.14 -4.87 6.26 30.59 0.19 -4.68 16 3 C 0.15 6.01 5.67 86.38 0.49 6.50 16 4 N -0.60 -27.98 2.05 -706.33 -1.45 -29.43 16 5 C -0.26 -14.50 9.90 84.04 0.83 -13.66 16 6 H 0.04 2.28 8.06 -2.91 -0.02 2.25 16 7 C 0.00 -0.14 5.29 84.86 0.45 0.31 16 8 N -0.94 -55.74 13.97 21.65 0.30 -55.44 16 9 Si 0.92 43.50 25.10 68.60 1.72 45.22 16 10 H -0.27 -11.90 6.68 99.48 0.66 -11.23 16 11 H -0.30 -14.63 7.11 99.48 0.71 -13.92 16 12 H -0.25 -11.36 7.11 99.48 0.71 -10.65 16 13 C 0.18 7.62 4.87 85.63 0.42 8.04 16 14 C 0.16 6.61 6.41 42.58 0.27 6.89 16 15 C -0.23 -8.92 9.52 22.44 0.21 -8.70 16 16 C 0.17 5.61 6.82 42.56 0.29 5.90 16 17 C -0.10 -2.51 10.22 71.23 0.73 -1.78 16 18 N -0.54 -17.92 10.38 -188.09 -1.95 -19.87 16 19 C 0.28 8.99 12.29 180.88 2.22 11.21 16 20 N -0.53 -19.68 10.38 -188.06 -1.95 -21.63 16 21 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 22 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 23 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 24 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 25 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.04 1.58 8.04 -2.39 -0.02 1.56 16 27 H 0.06 2.27 8.07 -2.39 -0.02 2.25 16 28 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 29 H 0.08 3.11 8.07 -2.39 -0.02 3.09 16 30 H 0.06 2.60 3.30 -2.39 -0.01 2.59 16 31 H 0.13 5.44 8.06 -2.91 -0.02 5.42 16 32 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.09 2.05 8.14 -2.38 -0.02 2.03 16 34 H 0.08 2.06 8.10 -2.39 -0.02 2.04 16 35 H 0.23 5.04 8.06 -2.91 -0.02 5.02 16 Total: -1.00 -64.23 294.97 4.51 -59.72 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: 1.02 Total: 14.38 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: 6.82 Total: 7.05 kcal Atomic # 7 Polarization: -121.32 SS G_CDS: -5.05 Total: -126.37 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 1.72 Total: 45.22 kcal Total: -64.23 4.51 -59.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292307869.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.368 kcal (2) G-P(sol) polarization free energy of solvation -64.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds