Wall clock time and date at job start Sun Mar 29 2020 22:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46834 * 2 1 4 4 N 1.46507 * 109.46816 * 180.02562 * 3 2 1 5 5 C 1.36938 * 120.00058 * 275.63929 * 4 3 2 6 6 H 1.07999 * 119.99659 * 33.99764 * 5 4 3 7 7 C 1.38811 * 120.00148 * 213.99765 * 5 4 3 8 8 N 1.31615 * 119.99897 * 22.95706 * 7 5 4 9 9 Si 1.86803 * 120.00036 * 202.95272 * 7 5 4 10 10 H 1.48495 * 109.47105 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.46946 * 120.00107 * 9 7 5 12 12 H 1.48499 * 109.46843 * 240.00032 * 9 7 5 13 13 C 1.46496 * 119.99931 * 95.64069 * 4 3 2 14 14 C 1.50702 * 109.47284 * 269.99742 * 13 4 3 15 15 C 1.38882 * 120.74914 * 269.98401 * 14 13 4 16 16 C 1.38024 * 119.33077 * 180.02562 * 15 14 13 17 17 N 1.31972 * 120.85341 * 359.97438 * 16 15 14 18 18 C 1.32399 * 121.62699 * 359.97438 * 17 16 15 19 19 N 1.39000 * 119.70423 * 180.02562 * 18 17 16 20 20 C 1.38303 * 120.74420 * 89.99751 * 14 13 4 21 21 H 1.09000 * 109.46793 * 299.99254 * 1 2 3 22 22 H 1.09001 * 109.47461 * 59.99438 * 1 2 3 23 23 H 1.09002 * 109.47448 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46793 * 240.00746 * 2 1 3 25 25 H 1.09001 * 109.47461 * 120.00562 * 2 1 3 26 26 H 1.09000 * 109.46822 * 60.00763 * 3 2 1 27 27 H 1.08996 * 109.47403 * 300.00052 * 3 2 1 28 28 H 0.97001 * 120.00272 * 179.97438 * 8 7 5 29 29 H 1.08996 * 109.47212 * 149.99919 * 13 4 3 30 30 H 1.08994 * 109.47262 * 29.99939 * 13 4 3 31 31 H 1.07997 * 120.33404 * 359.97438 * 15 14 13 32 32 H 1.07998 * 119.57065 * 179.97438 * 16 15 14 33 33 H 0.96993 * 120.00397 * 0.02562 * 19 18 17 34 34 H 0.97005 * 119.99409 * 180.02562 * 19 18 17 35 35 H 1.07998 * 120.45099 * 359.96319 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1902 1.3258 1.1792 6 1 3.7890 0.7212 1.9791 7 6 5.4004 1.9846 1.3472 8 7 5.6809 3.0424 0.6159 9 14 6.6310 1.3699 2.6111 10 1 6.0804 0.1735 3.2969 11 1 7.9009 1.0094 1.9309 12 1 6.8902 2.4380 3.6096 13 6 4.2370 1.5674 -1.2635 14 6 4.4880 0.1963 -1.8364 15 6 5.6403 -0.5083 -1.5131 16 6 5.8408 -1.7618 -2.0551 17 7 4.9530 -2.2954 -2.8728 18 6 3.8420 -1.6561 -3.2043 19 7 2.9339 -2.2562 -4.0688 20 6 3.5760 -0.3885 -2.6961 21 1 -0.3633 0.5137 0.8901 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8933 -0.5137 -0.8901 25 1 1.8934 -0.5139 0.8899 26 1 1.6767 1.9562 0.8901 27 1 1.6766 1.9564 -0.8899 28 1 6.5264 3.5030 0.7335 29 1 5.1894 2.0659 -1.0836 30 1 3.6476 2.1535 -1.9686 31 1 6.3725 -0.0794 -0.8451 32 1 6.7357 -2.3129 -1.8067 33 1 3.1152 -3.1395 -4.4261 34 1 2.1187 -1.7915 -4.3148 35 1 2.6693 0.1312 -2.9683 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299221277.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:36 Heat of formation + Delta-G solvation = 46.051799 kcal Electronic energy + Delta-G solvation = -16939.769534 eV Core-core repulsion = 14358.886851 eV Total energy + Delta-G solvation = -2580.882683 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.50247 -36.33481 -34.21551 -33.03019 -32.08333 -30.32753 -28.55858 -26.22357 -25.55788 -22.69633 -22.29375 -20.71804 -20.06326 -16.99388 -16.84493 -16.07380 -15.21347 -14.91411 -14.37487 -14.28569 -13.90199 -13.54944 -13.40749 -13.10780 -12.82755 -12.07256 -11.60221 -11.33114 -11.23218 -11.02702 -10.72082 -10.58362 -10.48809 -10.22254 -10.07259 -9.94855 -9.82968 -8.86260 -8.66876 -8.49363 -7.30176 -6.67405 -5.84553 -3.37630 1.96957 2.23352 3.33227 3.42978 3.46682 3.95395 4.43976 4.61899 5.21350 5.28481 5.50484 5.66887 5.67154 5.77807 5.85054 6.00715 6.07865 6.19748 6.24852 6.40630 6.44457 6.57098 6.60323 6.64781 6.81883 6.95782 7.16260 7.28743 7.36357 7.60542 7.75008 7.78864 7.88568 8.44682 8.79428 9.11980 9.75842 10.31502 11.15477 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.019724 B = 0.010294 C = 0.007753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.251972 B = 2719.498845 C = 3610.750704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.147 4.147 3 C 0.149 3.851 4 N -0.574 5.574 5 C -0.251 4.251 6 H 0.062 0.938 7 C 0.011 3.989 8 N -0.885 5.885 9 Si 0.892 3.108 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.290 1.290 13 C 0.167 3.833 14 C 0.011 3.989 15 C -0.204 4.204 16 C 0.127 3.873 17 N -0.562 5.562 18 C 0.386 3.614 19 N -0.863 5.863 20 C -0.236 4.236 21 H 0.048 0.952 22 H 0.046 0.954 23 H 0.041 0.959 24 H 0.057 0.943 25 H 0.054 0.946 26 H 0.045 0.955 27 H 0.034 0.966 28 H 0.255 0.745 29 H 0.113 0.887 30 H 0.035 0.965 31 H 0.127 0.873 32 H 0.144 0.856 33 H 0.395 0.605 34 H 0.402 0.598 35 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.000 -5.925 -6.401 10.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.187 4.187 3 C 0.023 3.977 4 N -0.292 5.292 5 C -0.381 4.381 6 H 0.079 0.921 7 C -0.189 4.189 8 N -0.527 5.527 9 Si 0.721 3.279 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.217 1.217 13 C 0.041 3.959 14 C 0.000 4.000 15 C -0.227 4.227 16 C -0.028 4.028 17 N -0.282 5.282 18 C 0.150 3.850 19 N -0.408 5.408 20 C -0.262 4.262 21 H 0.067 0.933 22 H 0.065 0.935 23 H 0.061 0.939 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.063 0.937 27 H 0.053 0.947 28 H 0.066 0.934 29 H 0.130 0.870 30 H 0.054 0.946 31 H 0.145 0.855 32 H 0.161 0.839 33 H 0.224 0.776 34 H 0.230 0.770 35 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -4.679 -6.541 -6.657 10.440 hybrid contribution 0.261 0.168 0.793 0.851 sum -4.418 -6.373 -5.864 9.722 Atomic orbital electron populations 1.21719 0.97451 1.00270 1.00931 1.22188 0.93629 1.01035 1.01878 1.20918 0.84893 0.93032 0.98843 1.43709 0.99393 1.84188 1.01911 1.19063 1.03075 1.23080 0.92880 0.92057 1.25045 1.00557 0.94977 0.98359 1.69973 1.23670 1.16745 1.42329 0.86392 0.81644 0.78671 0.81173 1.20050 1.21183 1.21652 1.20179 1.01273 0.88542 0.85946 1.21455 0.90550 0.99412 0.88628 1.21782 1.00209 0.96552 1.04178 1.22209 0.96027 0.92851 0.91726 1.67026 1.03863 1.37392 1.19887 1.18302 0.88352 0.89090 0.89218 1.42053 1.23437 1.22154 1.53166 1.21155 1.02756 0.96189 1.06065 0.93273 0.93508 0.93944 0.92383 0.92675 0.93658 0.94723 0.93443 0.87020 0.94627 0.85540 0.83898 0.77646 0.76952 0.86522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.91 37.16 0.37 -1.78 16 2 C -0.15 -2.72 6.23 -26.73 -0.17 -2.89 16 3 C 0.15 3.09 5.72 -4.04 -0.02 3.07 16 4 N -0.57 -13.79 2.44 -174.61 -0.43 -14.22 16 5 C -0.25 -6.66 9.48 -15.06 -0.14 -6.80 16 6 H 0.06 1.66 7.93 -52.49 -0.42 1.24 16 7 C 0.01 0.28 4.95 -17.43 -0.09 0.19 16 8 N -0.88 -24.39 11.31 55.49 0.63 -23.76 16 9 Si 0.89 21.03 29.61 -169.99 -5.03 16.00 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 13 C 0.17 3.82 5.50 -5.20 -0.03 3.79 16 14 C 0.01 0.22 5.47 -104.36 -0.57 -0.35 16 15 C -0.20 -4.18 9.81 -39.42 -0.39 -4.56 16 16 C 0.13 2.35 11.17 -17.57 -0.20 2.16 16 17 N -0.56 -10.46 10.39 -12.44 -0.13 -10.59 16 18 C 0.39 6.72 7.75 -155.02 -1.20 5.52 16 19 N -0.86 -11.14 9.07 31.13 0.28 -10.86 16 20 C -0.24 -4.33 7.84 -39.22 -0.31 -4.63 16 21 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 22 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.06 1.10 6.16 -51.93 -0.32 0.78 16 25 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 26 H 0.05 0.96 8.09 -51.93 -0.42 0.54 16 27 H 0.03 0.67 7.83 -51.93 -0.41 0.26 16 28 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 29 H 0.11 2.87 5.27 -51.93 -0.27 2.60 16 30 H 0.04 0.77 7.81 -51.93 -0.41 0.36 16 31 H 0.13 2.71 8.06 -52.49 -0.42 2.29 16 32 H 0.14 2.22 8.06 -52.49 -0.42 1.80 16 33 H 0.40 4.53 8.95 -40.82 -0.37 4.16 16 34 H 0.40 4.16 8.82 -40.82 -0.36 3.80 16 35 H 0.12 1.95 8.02 -52.49 -0.42 1.53 16 LS Contribution 293.88 15.07 4.43 4.43 Total: -1.00 -28.95 293.88 -8.05 -37.00 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -5.06 Total: 8.30 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: -2.74 Total: -6.30 kcal Atomic # 7 Polarization: -59.78 SS G_CDS: 0.35 Total: -59.43 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.03 Total: 16.00 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -28.95 -8.05 -37.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299221277.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.052 kcal (2) G-P(sol) polarization free energy of solvation -28.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds