Wall clock time and date at job start Sun Mar 29 2020 21:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50704 * 109.47035 * 2 1 4 4 C 1.38115 * 120.40467 * 125.28126 * 3 2 1 5 5 C 1.39620 * 118.33736 * 180.19231 * 4 3 2 6 6 N 1.38535 * 120.53432 * 179.79983 * 5 4 3 7 7 C 1.46505 * 120.00042 * 359.72401 * 6 5 4 8 8 H 1.09002 * 109.47068 * 34.99949 * 7 6 5 9 9 C 1.52997 * 109.47212 * 274.99889 * 7 6 5 10 10 C 1.50699 * 109.47262 * 154.99802 * 7 6 5 11 11 H 1.08000 * 119.99792 * 0.02562 * 10 7 6 12 12 C 1.37878 * 119.99902 * 179.97438 * 10 7 6 13 13 N 1.31515 * 120.00126 * 0.02562 * 12 10 7 14 14 Si 1.86803 * 119.99745 * 180.02562 * 12 10 7 15 15 H 1.48496 * 109.47319 * 60.00570 * 14 12 10 16 16 H 1.48503 * 109.46734 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47266 * 300.00384 * 14 12 10 18 18 N 1.32990 * 118.93343 * 359.53001 * 5 4 3 19 19 C 1.31754 * 120.69099 * 0.24861 * 18 5 4 20 20 C 1.50694 * 119.08823 * 180.02562 * 19 18 5 21 21 N 1.31793 * 121.82867 * 359.97438 * 19 18 5 22 22 H 1.09005 * 109.47187 * 300.00105 * 1 2 3 23 23 H 1.09002 * 109.47065 * 60.00264 * 1 2 3 24 24 H 1.09002 * 109.46918 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47186 * 239.99465 * 2 1 3 26 26 H 1.09002 * 109.47065 * 119.99736 * 2 1 3 27 27 H 1.08003 * 120.83073 * 359.97055 * 4 3 2 28 28 H 0.97005 * 120.00719 * 179.72401 * 6 5 4 29 29 H 1.08998 * 109.47533 * 59.99637 * 9 7 6 30 30 H 1.08996 * 109.47853 * 179.97438 * 9 7 6 31 31 H 1.09002 * 109.47153 * 300.00008 * 9 7 6 32 32 H 0.96999 * 120.00073 * 179.97438 * 13 12 10 33 33 H 1.08996 * 109.47098 * 89.99615 * 20 19 18 34 34 H 1.08998 * 109.47541 * 210.00280 * 20 19 18 35 35 H 1.09003 * 109.47199 * 330.00048 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.9140 1.8506 0.9724 5 6 3.3484 3.1769 0.9337 6 7 4.2294 3.6571 1.8889 7 6 4.7081 2.7728 2.9544 8 1 4.8223 1.7617 2.5635 9 6 3.6972 2.7645 4.1028 10 6 6.0382 3.2692 3.4596 11 1 6.4824 4.1551 3.0302 12 6 6.6876 2.5931 4.4706 13 7 6.1464 1.5146 4.9938 14 14 8.3361 3.2089 5.0973 15 1 8.1801 4.5864 5.6296 16 1 8.8213 2.3124 6.1772 17 1 9.3177 3.2170 3.9830 18 7 2.9072 3.9703 -0.0381 19 6 2.0696 3.5168 -0.9484 20 6 1.5931 4.4472 -2.0339 21 7 1.6377 2.2717 -0.9366 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 3.2559 1.1784 1.7455 28 1 4.5294 4.5789 1.8524 29 1 2.7351 2.4054 3.7375 30 1 4.0530 2.1062 4.8954 31 1 3.5830 3.7755 4.4937 32 1 6.6034 1.0387 5.7048 33 1 2.2715 4.3900 -2.8851 34 1 0.5908 4.1561 -2.3479 35 1 1.5725 5.4686 -1.6538 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000302030858.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:41 Heat of formation + Delta-G solvation = 12.574326 kcal Electronic energy + Delta-G solvation = -16377.781968 eV Core-core repulsion = 13795.447593 eV Total energy + Delta-G solvation = -2582.334375 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.87216 -38.16018 -36.06547 -35.03570 -32.91014 -32.01181 -30.17750 -29.21024 -27.37576 -25.51598 -23.98167 -22.36399 -21.77281 -19.58753 -18.01776 -17.52467 -16.78493 -16.33128 -16.11184 -15.49550 -15.37903 -14.88839 -14.53027 -14.22333 -14.14103 -13.56557 -13.34000 -13.17603 -12.96344 -12.87407 -12.75172 -12.38365 -12.35445 -12.17731 -12.10904 -11.62452 -11.54583 -11.13542 -10.63150 -10.43510 -10.07046 -8.88559 -8.23823 -6.39480 0.18799 0.51653 1.43270 1.43652 1.51744 2.22431 2.46387 2.95425 3.07432 3.20032 3.45378 3.89031 4.20730 4.31798 4.42396 4.52782 4.65297 4.68109 4.75620 4.80321 4.88428 4.93799 4.99539 5.04863 5.13694 5.19915 5.29874 5.40551 5.53040 5.64399 5.79340 5.89056 6.05641 6.51094 6.66027 6.91008 7.30473 7.45773 8.81782 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.031983 B = 0.006163 C = 0.005429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.257233 B = 4542.422318 C = 5155.897700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.072 4.072 3 C 0.200 3.800 4 C -0.318 4.318 5 C 0.430 3.570 6 N -0.689 5.689 7 C 0.278 3.722 8 H 0.021 0.979 9 C -0.139 4.139 10 C -0.554 4.554 11 H 0.061 0.939 12 C 0.025 3.975 13 N -0.909 5.909 14 Si 0.967 3.033 15 H -0.270 1.270 16 H -0.280 1.280 17 H -0.274 1.274 18 N -0.611 5.611 19 C 0.340 3.660 20 C -0.074 4.074 21 N -0.577 5.577 22 H 0.041 0.959 23 H 0.060 0.940 24 H 0.083 0.917 25 H 0.098 0.902 26 H 0.086 0.914 27 H 0.132 0.868 28 H 0.399 0.601 29 H 0.023 0.977 30 H 0.075 0.925 31 H 0.030 0.970 32 H 0.269 0.731 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.422 -0.473 -8.843 12.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.110 4.110 3 C 0.058 3.942 4 C -0.347 4.347 5 C 0.184 3.816 6 N -0.316 5.316 7 C 0.175 3.825 8 H 0.039 0.961 9 C -0.198 4.198 10 C -0.592 4.592 11 H 0.080 0.920 12 C -0.176 4.176 13 N -0.547 5.547 14 Si 0.792 3.208 15 H -0.195 1.195 16 H -0.205 1.205 17 H -0.199 1.199 18 N -0.339 5.339 19 C 0.071 3.929 20 C -0.132 4.132 21 N -0.299 5.299 22 H 0.060 0.940 23 H 0.079 0.921 24 H 0.101 0.899 25 H 0.116 0.884 26 H 0.104 0.896 27 H 0.150 0.850 28 H 0.234 0.766 29 H 0.042 0.958 30 H 0.094 0.906 31 H 0.049 0.951 32 H 0.078 0.922 33 H 0.114 0.886 34 H 0.117 0.883 35 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -8.596 -0.182 -9.181 12.578 hybrid contribution 1.527 0.081 1.407 2.078 sum -7.069 -0.101 -7.774 10.508 Atomic orbital electron populations 1.21585 0.92705 1.02899 1.01832 1.20607 0.98006 0.88133 1.04212 1.21792 0.88213 0.97090 0.87097 1.22111 1.08787 0.96841 1.06913 1.18957 0.86414 0.89465 0.86727 1.45242 1.44737 1.14985 1.26673 1.18578 0.92143 0.89050 0.82702 0.96149 1.22004 0.96486 1.00355 1.00909 1.21417 1.04446 1.12995 1.20325 0.92036 1.25622 1.01353 0.94787 0.95877 1.69960 1.39886 1.18249 1.26601 0.85469 0.79055 0.78369 0.77899 1.19493 1.20527 1.19905 1.67847 1.19749 1.39140 1.07134 1.23700 0.86798 0.90135 0.92253 1.20597 1.02719 0.96426 0.93449 1.68099 1.30371 1.04133 1.27256 0.93989 0.92057 0.89855 0.88426 0.89571 0.85014 0.76634 0.95785 0.90599 0.95077 0.92209 0.88599 0.88313 0.89397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.90 9.78 71.98 0.70 -2.20 16 2 C -0.07 -1.84 6.36 29.85 0.19 -1.65 16 3 C 0.20 6.86 6.20 42.42 0.26 7.13 16 4 C -0.32 -12.69 8.57 22.57 0.19 -12.50 16 5 C 0.43 18.22 7.69 133.16 1.02 19.24 16 6 N -0.69 -30.59 5.22 -327.64 -1.71 -32.30 16 7 C 0.28 13.68 2.26 44.24 0.10 13.78 16 8 H 0.02 1.11 6.50 -2.39 -0.02 1.09 16 9 C -0.14 -6.58 9.24 71.98 0.67 -5.91 16 10 C -0.55 -29.05 8.73 25.60 0.22 -28.83 16 11 H 0.06 3.17 7.74 -2.91 -0.02 3.14 16 12 C 0.02 1.29 5.30 84.65 0.45 1.74 16 13 N -0.91 -49.09 11.32 21.45 0.24 -48.85 16 14 Si 0.97 41.42 29.54 68.60 2.03 43.45 16 15 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 16 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 17 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 18 N -0.61 -24.07 10.37 -185.45 -1.92 -25.99 16 19 C 0.34 11.61 7.64 138.76 1.06 12.67 16 20 C -0.07 -1.71 10.32 71.23 0.73 -0.97 16 21 N -0.58 -19.67 9.93 -176.28 -1.75 -21.42 16 22 H 0.04 0.99 8.14 -2.38 -0.02 0.97 16 23 H 0.06 1.39 7.98 -2.39 -0.02 1.37 16 24 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 26 H 0.09 2.10 7.93 -2.39 -0.02 2.08 16 27 H 0.13 5.45 6.29 -2.91 -0.02 5.43 16 28 H 0.40 17.05 8.66 -92.70 -0.80 16.25 16 29 H 0.02 1.04 7.81 -2.39 -0.02 1.02 16 30 H 0.08 3.89 6.07 -2.39 -0.01 3.88 16 31 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.27 13.76 8.31 -92.71 -0.77 12.99 16 33 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -58.92 294.07 2.78 -56.14 By element: Atomic # 1 Polarization: 26.18 SS G_CDS: 0.28 Total: 26.46 kcal Atomic # 6 Polarization: -3.10 SS G_CDS: 5.61 Total: 2.50 kcal Atomic # 7 Polarization: -123.41 SS G_CDS: -5.14 Total: -128.55 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.45 kcal Total: -58.92 2.78 -56.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000302030858.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.714 kcal (2) G-P(sol) polarization free energy of solvation -58.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds