Wall clock time and date at job start Sun Mar 29 2020 22:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 120.00000 * 2 1 4 4 H 1.48499 * 109.47058 * 95.00517 * 3 2 1 5 5 H 1.48497 * 109.47169 * 215.00343 * 3 2 1 6 6 H 1.48504 * 109.47073 * 335.00527 * 3 2 1 7 7 C 1.37877 * 120.00390 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00297 * 172.48887 * 7 2 1 9 9 C 1.50703 * 119.99698 * 352.48748 * 7 2 1 10 10 C 1.53000 * 115.55001 * 183.38659 * 9 7 2 11 11 N 1.46897 * 109.47142 * 325.58280 * 10 9 7 12 12 C 1.46738 * 111.00084 * 294.91266 * 11 10 9 13 13 C 1.53094 * 109.77876 * 235.50707 * 12 11 10 14 14 C 1.53219 * 109.07668 * 59.55804 * 13 12 11 15 15 C 1.53162 * 108.90588 * 302.21540 * 14 13 12 16 16 C 1.46725 * 110.99967 * 169.99987 * 11 10 9 17 17 C 1.53052 * 109.64577 * 184.38795 * 16 11 10 18 18 C 1.52781 * 109.34616 * 300.44622 * 17 16 11 19 19 C 1.53005 * 117.49382 * 37.71874 * 9 7 2 20 20 C 1.53004 * 117.49715 * 329.05938 * 9 7 2 21 21 H 0.97005 * 120.00033 * 0.02562 * 1 2 3 22 22 H 1.08995 * 109.46857 * 85.58664 * 10 9 7 23 23 H 1.09010 * 109.46784 * 205.58695 * 10 9 7 24 24 H 1.08999 * 109.42162 * 355.59912 * 12 11 10 25 25 H 1.08999 * 109.42287 * 115.41512 * 12 11 10 26 26 H 1.08999 * 110.21924 * 179.97438 * 13 12 11 27 27 H 1.08998 * 109.56702 * 182.39039 * 14 13 12 28 28 H 1.08999 * 109.65982 * 62.09756 * 14 13 12 29 29 H 1.09002 * 109.52716 * 239.73429 * 15 14 13 30 30 H 1.08998 * 109.52878 * 119.53383 * 15 14 13 31 31 H 1.09006 * 109.42188 * 304.39867 * 16 11 10 32 32 H 1.08998 * 109.52350 * 60.15446 * 17 16 11 33 33 H 1.09002 * 109.52516 * 180.35330 * 17 16 11 34 34 H 1.08997 * 109.51110 * 240.43979 * 18 17 16 35 35 H 1.09002 * 109.76375 * 120.12548 * 18 17 16 36 36 H 1.08993 * 117.50291 * 359.97438 * 19 9 7 37 37 H 1.09004 * 117.49459 * 145.02082 * 19 9 7 38 38 H 1.09001 * 117.49687 * 214.97524 * 20 9 7 39 39 H 1.08996 * 117.49828 * 359.97438 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6024 1.9854 1.3947 5 1 3.4898 1.4731 -0.8031 6 1 1.3977 2.6810 -0.5916 7 6 2.0046 -1.1940 0.0005 8 1 3.0776 -1.1981 -0.1217 9 6 1.2608 -2.4935 0.1718 10 6 2.1326 -3.7491 0.2378 11 7 3.2992 -3.5818 -0.6391 12 6 2.8911 -3.4899 -2.0455 13 6 3.6193 -4.5569 -2.8671 14 6 3.2689 -5.9415 -2.3125 15 6 3.6620 -5.9976 -0.8332 16 6 4.2756 -4.6560 -0.4257 17 6 5.5232 -4.3930 -1.2724 18 6 5.1307 -4.3357 -2.7478 19 6 -0.1076 -2.6181 -0.5012 20 6 -0.0127 -2.4721 1.0196 21 1 -0.4850 0.8401 -0.0004 22 1 2.4680 -3.9049 1.2631 23 1 1.5524 -4.6118 -0.0899 24 1 1.8150 -3.6458 -2.1216 25 1 3.1413 -2.5018 -2.4317 26 1 3.3208 -4.4953 -3.9136 27 1 3.8165 -6.7052 -2.8648 28 1 2.1977 -6.1163 -2.4124 29 1 4.3910 -6.7933 -0.6798 30 1 2.7765 -6.1919 -0.2281 31 1 4.5532 -4.6895 0.6279 32 1 5.9672 -3.4412 -0.9810 33 1 6.2446 -5.1953 -1.1172 34 1 5.6582 -5.1166 -3.2955 35 1 5.3907 -3.3610 -3.1608 36 1 -0.4701 -1.7601 -1.0674 37 1 -0.3870 -3.5947 -0.8966 38 1 -0.2296 -3.3528 1.6242 39 1 -0.3122 -1.5183 1.4539 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308820619.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:34 Heat of formation + Delta-G solvation = 27.891771 kcal Electronic energy + Delta-G solvation = -17920.772017 eV Core-core repulsion = 15442.642199 eV Total energy + Delta-G solvation = -2478.129818 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 235.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.24588 -36.51116 -32.92257 -31.29238 -30.88584 -30.58539 -26.28574 -25.13793 -22.58908 -22.28975 -21.72009 -20.56319 -18.81582 -16.42523 -16.39983 -15.73284 -15.39099 -15.10958 -14.51163 -13.52578 -13.01106 -12.88873 -12.60877 -12.06457 -11.92379 -11.87335 -11.85989 -11.65234 -11.42352 -10.99573 -10.87690 -10.54805 -10.48770 -10.01968 -9.97102 -9.88680 -9.82100 -9.60585 -9.27569 -8.66492 -8.21474 -7.90350 -7.24342 -5.81451 -3.81216 3.38364 3.44735 3.48768 4.52430 4.60107 4.89750 4.99529 5.07295 5.22334 5.46564 5.50565 5.63016 5.65772 5.70502 5.83038 5.91982 5.97984 6.08176 6.14734 6.24630 6.27751 6.32924 6.40905 6.51654 6.54154 6.59683 6.62723 6.69171 6.82608 6.92624 7.13101 7.29539 7.40610 7.78686 7.98059 8.08985 8.21636 8.31561 8.74023 9.20221 9.72475 11.15891 Molecular weight = 235.16amu Principal moments of inertia in cm(-1) A = 0.029187 B = 0.008871 C = 0.007724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.086398 B = 3155.529281 C = 3624.382342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.050 3.950 3 Si 0.892 3.108 4 H -0.283 1.283 5 H -0.275 1.275 6 H -0.292 1.292 7 C -0.446 4.446 8 H 0.075 0.925 9 C 0.024 3.976 10 C 0.104 3.896 11 N -0.506 5.506 12 C 0.076 3.924 13 C -0.111 4.111 14 C -0.111 4.111 15 C -0.152 4.152 16 C 0.083 3.917 17 C -0.108 4.108 18 C -0.108 4.108 19 C -0.193 4.193 20 C -0.191 4.191 21 H 0.255 0.745 22 H 0.056 0.944 23 H 0.012 0.988 24 H 0.056 0.944 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.057 0.943 34 H 0.052 0.948 35 H 0.062 0.938 36 H 0.110 0.890 37 H 0.034 0.966 38 H 0.038 0.962 39 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.306 -9.816 -3.664 12.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.150 4.150 3 Si 0.721 3.279 4 H -0.209 1.209 5 H -0.200 1.200 6 H -0.218 1.218 7 C -0.484 4.484 8 H 0.094 0.906 9 C 0.024 3.976 10 C -0.023 4.023 11 N -0.229 5.229 12 C -0.051 4.051 13 C -0.131 4.131 14 C -0.149 4.149 15 C -0.191 4.191 16 C -0.026 4.026 17 C -0.146 4.146 18 C -0.145 4.145 19 C -0.230 4.230 20 C -0.230 4.230 21 H 0.065 0.935 22 H 0.074 0.926 23 H 0.030 0.970 24 H 0.074 0.926 25 H 0.091 0.909 26 H 0.088 0.912 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.128 0.872 37 H 0.053 0.947 38 H 0.057 0.943 39 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 7.395 -9.221 -3.545 12.340 hybrid contribution -0.214 0.053 -0.161 0.273 sum 7.181 -9.168 -3.706 12.221 Atomic orbital electron populations 1.70039 1.05785 1.25591 1.51241 1.25063 0.94852 0.99118 0.95929 0.86604 0.79766 0.83509 0.78033 1.20940 1.19993 1.21783 1.20684 0.94173 0.88019 1.45491 0.90648 1.19001 0.85377 0.93029 1.00238 1.21670 0.89903 0.95779 0.94992 1.61905 1.13663 1.42022 1.05265 1.21978 0.98189 0.97623 0.87339 1.21577 0.96073 0.95804 0.99613 1.21565 1.00592 0.96806 0.95941 1.22228 1.00987 0.99230 0.96652 1.21569 0.93235 0.88827 0.98982 1.21482 0.96579 1.01604 0.94886 1.21478 0.95296 1.01117 0.96637 1.22944 1.05866 0.98505 0.95728 1.22762 1.06965 1.00122 0.93128 0.93509 0.92601 0.96965 0.92553 0.90860 0.91157 0.92578 0.92452 0.92338 0.92071 0.90664 0.91229 0.92441 0.92928 0.91888 0.87181 0.94735 0.94327 0.87509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.02 8.65 55.43 0.48 -24.54 16 2 C 0.05 1.37 5.24 -17.82 -0.09 1.28 16 3 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 7 C -0.45 -12.07 8.37 -34.44 -0.29 -12.36 16 8 H 0.08 2.07 7.17 -52.49 -0.38 1.69 16 9 C 0.02 0.60 1.74 -155.65 -0.27 0.33 16 10 C 0.10 2.18 4.30 -3.83 -0.02 2.17 16 11 N -0.51 -9.74 3.60 -226.80 -0.82 -10.56 16 12 C 0.08 1.42 4.87 -3.86 -0.02 1.41 16 13 C -0.11 -1.65 3.30 -90.35 -0.30 -1.94 16 14 C -0.11 -1.53 5.76 -26.53 -0.15 -1.68 16 15 C -0.15 -2.14 5.46 -26.62 -0.15 -2.28 16 16 C 0.08 1.31 2.92 -67.75 -0.20 1.11 16 17 C -0.11 -1.50 5.87 -26.82 -0.16 -1.66 16 18 C -0.11 -1.45 5.75 -26.73 -0.15 -1.61 16 19 C -0.19 -4.83 8.71 -26.69 -0.23 -5.07 16 20 C -0.19 -4.84 9.38 -26.69 -0.25 -5.09 16 21 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 22 H 0.06 1.16 8.00 -51.93 -0.42 0.74 16 23 H 0.01 0.25 6.66 -51.92 -0.35 -0.09 16 24 H 0.06 1.15 6.64 -51.93 -0.34 0.80 16 25 H 0.07 1.50 8.14 -51.93 -0.42 1.07 16 26 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.91 6.76 -51.93 -0.35 0.56 16 31 H 0.08 1.18 8.04 -51.93 -0.42 0.76 16 32 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.11 3.06 6.29 -51.93 -0.33 2.74 16 37 H 0.03 0.80 8.05 -51.93 -0.42 0.38 16 38 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.11 2.97 6.29 -51.93 -0.33 2.65 16 LS Contribution 288.43 15.07 4.35 4.35 Total: -1.00 -27.55 288.43 -9.97 -37.52 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -6.69 Total: 2.08 kcal Atomic # 6 Polarization: -23.11 SS G_CDS: -2.28 Total: -25.39 kcal Atomic # 7 Polarization: -34.76 SS G_CDS: -0.34 Total: -35.10 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -27.55 -9.97 -37.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308820619.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.413 kcal (2) G-P(sol) polarization free energy of solvation -27.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds