Wall clock time and date at job start Sun Mar 29 2020 22:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 120.00000 * 2 1 4 4 H 1.48499 * 109.47058 * 95.00517 * 3 2 1 5 5 H 1.48497 * 109.47169 * 215.00343 * 3 2 1 6 6 H 1.48504 * 109.47073 * 335.00527 * 3 2 1 7 7 C 1.37877 * 120.00390 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00297 * 172.48887 * 7 2 1 9 9 C 1.50703 * 119.99698 * 352.48748 * 7 2 1 10 10 C 1.53000 * 115.55001 * 183.38659 * 9 7 2 11 11 N 1.46897 * 109.47142 * 325.58280 * 10 9 7 12 12 C 1.46738 * 111.00084 * 294.91266 * 11 10 9 13 13 C 1.53094 * 109.77876 * 235.50707 * 12 11 10 14 14 C 1.53219 * 109.07668 * 59.55804 * 13 12 11 15 15 C 1.53162 * 108.90588 * 302.21540 * 14 13 12 16 16 C 1.46725 * 110.99967 * 169.99987 * 11 10 9 17 17 C 1.53052 * 109.64577 * 184.38795 * 16 11 10 18 18 C 1.52781 * 109.34616 * 300.44622 * 17 16 11 19 19 C 1.53005 * 117.49382 * 37.71874 * 9 7 2 20 20 C 1.53004 * 117.49715 * 329.05938 * 9 7 2 21 21 H 0.97005 * 120.00033 * 0.02562 * 1 2 3 22 22 H 1.08995 * 109.46857 * 85.58664 * 10 9 7 23 23 H 1.09010 * 109.46784 * 205.58695 * 10 9 7 24 24 H 1.08999 * 109.42162 * 355.59912 * 12 11 10 25 25 H 1.08999 * 109.42287 * 115.41512 * 12 11 10 26 26 H 1.08999 * 110.21924 * 179.97438 * 13 12 11 27 27 H 1.08998 * 109.56702 * 182.39039 * 14 13 12 28 28 H 1.08999 * 109.65982 * 62.09756 * 14 13 12 29 29 H 1.09002 * 109.52716 * 239.73429 * 15 14 13 30 30 H 1.08998 * 109.52878 * 119.53383 * 15 14 13 31 31 H 1.09006 * 109.42188 * 304.39867 * 16 11 10 32 32 H 1.08998 * 109.52350 * 60.15446 * 17 16 11 33 33 H 1.09002 * 109.52516 * 180.35330 * 17 16 11 34 34 H 1.08997 * 109.51110 * 240.43979 * 18 17 16 35 35 H 1.09002 * 109.76375 * 120.12548 * 18 17 16 36 36 H 1.08993 * 117.50291 * 359.97438 * 19 9 7 37 37 H 1.09004 * 117.49459 * 145.02082 * 19 9 7 38 38 H 1.09001 * 117.49687 * 214.97524 * 20 9 7 39 39 H 1.08996 * 117.49828 * 359.97438 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6024 1.9854 1.3947 5 1 3.4898 1.4731 -0.8031 6 1 1.3977 2.6810 -0.5916 7 6 2.0046 -1.1940 0.0005 8 1 3.0776 -1.1981 -0.1217 9 6 1.2608 -2.4935 0.1718 10 6 2.1326 -3.7491 0.2378 11 7 3.2992 -3.5818 -0.6391 12 6 2.8911 -3.4899 -2.0455 13 6 3.6193 -4.5569 -2.8671 14 6 3.2689 -5.9415 -2.3125 15 6 3.6620 -5.9976 -0.8332 16 6 4.2756 -4.6560 -0.4257 17 6 5.5232 -4.3930 -1.2724 18 6 5.1307 -4.3357 -2.7478 19 6 -0.1076 -2.6181 -0.5012 20 6 -0.0127 -2.4721 1.0196 21 1 -0.4850 0.8401 -0.0004 22 1 2.4680 -3.9049 1.2631 23 1 1.5524 -4.6118 -0.0899 24 1 1.8150 -3.6458 -2.1216 25 1 3.1413 -2.5018 -2.4317 26 1 3.3208 -4.4953 -3.9136 27 1 3.8165 -6.7052 -2.8648 28 1 2.1977 -6.1163 -2.4124 29 1 4.3910 -6.7933 -0.6798 30 1 2.7765 -6.1919 -0.2281 31 1 4.5532 -4.6895 0.6279 32 1 5.9672 -3.4412 -0.9810 33 1 6.2446 -5.1953 -1.1172 34 1 5.6582 -5.1166 -3.2955 35 1 5.3907 -3.3610 -3.1608 36 1 -0.4701 -1.7601 -1.0674 37 1 -0.3870 -3.5947 -0.8966 38 1 -0.2296 -3.3528 1.6242 39 1 -0.3122 -1.5183 1.4539 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308820619.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:33 Heat of formation + Delta-G solvation = 13.920479 kcal Electronic energy + Delta-G solvation = -17921.377857 eV Core-core repulsion = 15442.642199 eV Total energy + Delta-G solvation = -2478.735658 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 235.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.53103 -38.40793 -34.48069 -33.27188 -32.16743 -31.66014 -28.06847 -27.04364 -24.03138 -23.37923 -23.03616 -22.53520 -20.76641 -18.10246 -17.62558 -17.09485 -17.00356 -16.71740 -16.13468 -15.36828 -14.59949 -14.44994 -14.01969 -13.61293 -13.30083 -13.05016 -13.01951 -12.92265 -12.90224 -12.85029 -12.63145 -12.37569 -12.14668 -11.92143 -11.89044 -11.27027 -11.10609 -10.93511 -10.83744 -10.69356 -10.19472 -9.95540 -8.71475 -7.92400 -5.97815 1.43485 1.45053 1.54312 2.49376 3.06501 3.25973 3.75884 3.85321 3.90940 3.98061 4.23604 4.43308 4.48386 4.49507 4.56458 4.57029 4.60479 4.71567 4.77206 4.82166 4.85395 4.94639 5.09788 5.12218 5.17068 5.19923 5.26977 5.30683 5.40253 5.45608 5.45892 5.48304 5.56285 5.71763 6.02383 6.21483 6.43644 6.64810 6.70774 7.07045 7.58104 9.02697 Molecular weight = 235.16amu Principal moments of inertia in cm(-1) A = 0.029187 B = 0.008871 C = 0.007724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.086398 B = 3155.529281 C = 3624.382342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.004 3.996 3 Si 0.951 3.049 4 H -0.280 1.280 5 H -0.271 1.271 6 H -0.291 1.291 7 C -0.457 4.457 8 H 0.067 0.933 9 C 0.018 3.982 10 C 0.116 3.884 11 N -0.525 5.525 12 C 0.082 3.918 13 C -0.108 4.108 14 C -0.108 4.108 15 C -0.146 4.146 16 C 0.077 3.923 17 C -0.105 4.105 18 C -0.105 4.105 19 C -0.188 4.188 20 C -0.193 4.193 21 H 0.252 0.748 22 H 0.058 0.942 23 H 0.019 0.981 24 H 0.031 0.969 25 H 0.043 0.957 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.048 0.952 29 H 0.085 0.915 30 H 0.049 0.951 31 H 0.075 0.925 32 H 0.054 0.946 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.054 0.946 36 H 0.080 0.920 37 H 0.053 0.947 38 H 0.062 0.938 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.111 -11.539 -4.106 15.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.194 4.194 3 Si 0.778 3.222 4 H -0.206 1.206 5 H -0.196 1.196 6 H -0.218 1.218 7 C -0.494 4.494 8 H 0.086 0.914 9 C 0.017 3.983 10 C -0.011 4.011 11 N -0.248 5.248 12 C -0.046 4.046 13 C -0.127 4.127 14 C -0.146 4.146 15 C -0.185 4.185 16 C -0.032 4.032 17 C -0.142 4.142 18 C -0.142 4.142 19 C -0.226 4.226 20 C -0.232 4.232 21 H 0.062 0.938 22 H 0.076 0.924 23 H 0.037 0.963 24 H 0.050 0.950 25 H 0.062 0.938 26 H 0.098 0.902 27 H 0.102 0.898 28 H 0.066 0.934 29 H 0.104 0.896 30 H 0.068 0.932 31 H 0.093 0.907 32 H 0.073 0.927 33 H 0.106 0.894 34 H 0.100 0.900 35 H 0.073 0.927 36 H 0.098 0.902 37 H 0.071 0.929 38 H 0.080 0.920 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 9.212 -10.954 -3.987 14.857 hybrid contribution -0.790 0.608 -0.019 0.997 sum 8.422 -10.346 -4.005 13.929 Atomic orbital electron populations 1.70193 1.06811 1.25922 1.51904 1.25735 0.95619 1.02044 0.95980 0.85679 0.78614 0.79952 0.77955 1.20631 1.19600 1.21755 1.20871 0.93950 0.89311 1.45299 0.91435 1.19181 0.85615 0.94078 0.99381 1.21434 0.90194 0.93883 0.95628 1.61761 1.13401 1.44464 1.05164 1.21807 0.97208 0.97695 0.87929 1.21542 0.96641 0.95109 0.99393 1.21562 1.00506 0.96534 0.95978 1.22170 1.01061 0.98740 0.96571 1.21715 0.93064 0.88793 0.99608 1.21491 0.96073 1.02002 0.94682 1.21476 0.94291 1.01778 0.96686 1.22744 1.06409 0.98133 0.95345 1.22663 1.07613 0.99665 0.93246 0.93842 0.92376 0.96318 0.95025 0.93842 0.90152 0.89806 0.93361 0.89613 0.93245 0.90714 0.92700 0.89449 0.90037 0.92720 0.90205 0.92897 0.91998 0.90334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.59 8.65 21.45 0.19 -52.41 16 2 C 0.00 0.20 5.24 84.66 0.44 0.64 16 3 Si 0.95 45.00 29.54 68.60 2.03 47.03 16 4 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 5 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 6 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 7 C -0.46 -25.16 8.37 25.60 0.21 -24.94 16 8 H 0.07 3.76 7.17 -2.91 -0.02 3.74 16 9 C 0.02 0.91 1.74 -52.92 -0.09 0.82 16 10 C 0.12 4.84 4.30 86.30 0.37 5.22 16 11 N -0.52 -19.95 3.60 -871.45 -3.14 -23.08 16 12 C 0.08 3.04 4.87 86.37 0.42 3.46 16 13 C -0.11 -2.96 3.30 -10.62 -0.04 -2.99 16 14 C -0.11 -2.63 5.76 30.72 0.18 -2.45 16 15 C -0.15 -3.65 5.46 30.67 0.17 -3.48 16 16 C 0.08 2.25 2.92 44.98 0.13 2.38 16 17 C -0.10 -2.61 5.87 30.54 0.18 -2.43 16 18 C -0.10 -2.51 5.75 30.59 0.18 -2.34 16 19 C -0.19 -9.62 8.71 30.62 0.27 -9.35 16 20 C -0.19 -9.87 9.38 30.62 0.29 -9.59 16 21 H 0.25 14.15 8.31 -92.70 -0.77 13.38 16 22 H 0.06 2.36 8.00 -2.39 -0.02 2.34 16 23 H 0.02 0.75 6.66 -2.38 -0.02 0.74 16 24 H 0.03 1.31 6.64 -2.39 -0.02 1.29 16 25 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 26 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 27 H 0.08 1.61 8.14 -2.39 -0.02 1.60 16 28 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.05 1.35 6.76 -2.39 -0.02 1.33 16 31 H 0.07 2.19 8.04 -2.38 -0.02 2.17 16 32 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.08 4.59 6.29 -2.39 -0.02 4.58 16 37 H 0.05 2.46 8.05 -2.39 -0.02 2.44 16 38 H 0.06 2.82 8.14 -2.39 -0.02 2.80 16 39 H 0.08 4.48 6.29 -2.39 -0.02 4.46 16 Total: -1.00 -59.80 288.43 2.78 -57.02 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: 1.00 Total: 16.49 kcal Atomic # 6 Polarization: -47.76 SS G_CDS: 2.71 Total: -45.05 kcal Atomic # 7 Polarization: -72.54 SS G_CDS: -2.95 Total: -75.49 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -59.80 2.78 -57.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308820619.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.943 kcal (2) G-P(sol) polarization free energy of solvation -59.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds