Wall clock time and date at job start Sun Mar 29 2020 22:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47033 * 2 1 4 4 C 1.50697 * 109.46877 * 240.00145 * 2 1 3 5 5 N 1.33237 * 125.53086 * 60.42145 * 4 2 1 6 6 C 1.30831 * 109.83449 * 179.85347 * 5 4 2 7 7 N 1.34431 * 108.07192 * 0.40616 * 6 5 4 8 8 C 1.46501 * 126.82229 * 179.78840 * 7 6 5 9 9 C 1.52998 * 109.47390 * 86.05832 * 8 7 6 10 10 C 1.50700 * 115.54864 * 273.42798 * 9 8 7 11 11 H 1.07995 * 120.00463 * 114.85871 * 10 9 8 12 12 C 1.37885 * 120.00073 * 294.85802 * 10 9 8 13 13 N 1.31512 * 119.99566 * 4.14385 * 12 10 9 14 14 Si 1.86795 * 120.00124 * 184.14236 * 12 10 9 15 15 H 1.48496 * 109.47215 * 65.03949 * 14 12 10 16 16 H 1.48506 * 109.46973 * 185.03763 * 14 12 10 17 17 H 1.48505 * 109.47182 * 305.03656 * 14 12 10 18 18 C 1.52999 * 117.50333 * 127.71738 * 9 8 7 19 19 C 1.52998 * 117.49825 * 59.09284 * 9 8 7 20 20 N 1.30720 * 125.52529 * 240.73193 * 4 2 1 21 21 H 1.09000 * 109.47114 * 59.99865 * 1 2 3 22 22 H 1.08997 * 109.47156 * 299.99905 * 1 2 3 23 23 H 1.08999 * 109.47099 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47114 * 120.00135 * 2 1 3 25 25 H 1.09002 * 109.47116 * 61.91750 * 3 2 1 26 26 H 1.09000 * 109.46701 * 181.92006 * 3 2 1 27 27 H 1.09005 * 109.46780 * 301.91828 * 3 2 1 28 28 H 1.08001 * 125.96768 * 180.19664 * 6 5 4 29 29 H 1.08998 * 109.47412 * 206.06156 * 8 7 6 30 30 H 1.09003 * 109.47123 * 326.05655 * 8 7 6 31 31 H 0.97000 * 120.00288 * 185.20722 * 13 12 10 32 32 H 1.08998 * 117.49397 * 0.02562 * 18 9 8 33 33 H 1.08994 * 117.50063 * 145.02145 * 18 9 8 34 34 H 1.09004 * 117.49919 * 214.98243 * 19 9 8 35 35 H 1.08993 * 117.49964 * 0.02562 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 7 1.7858 -0.3479 -2.4887 6 6 2.3729 -1.1773 -3.3127 7 7 3.0108 -2.1087 -2.5829 8 6 3.7959 -3.2364 -3.0910 9 6 5.2335 -2.7814 -3.3501 10 6 5.4888 -2.1747 -4.7058 11 1 5.7705 -1.1354 -4.7880 12 6 5.3629 -2.9466 -5.8414 13 7 4.9413 -4.1889 -5.7485 14 14 5.7910 -2.2279 -7.5115 15 1 7.2430 -1.9206 -7.5607 16 1 5.4567 -3.2105 -8.5737 17 1 5.0135 -0.9813 -7.7280 18 6 6.3594 -3.6042 -2.7205 19 6 6.0211 -2.2193 -2.1650 20 7 2.7759 -1.7855 -1.2365 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5139 0.8900 25 1 1.7050 1.9463 0.9067 26 1 3.1295 1.4426 -0.0344 27 1 1.6488 1.9661 -0.8723 28 1 2.3465 -1.1250 -4.3912 29 1 3.7963 -4.0400 -2.3546 30 1 3.3554 -3.5961 -4.0209 31 1 4.9244 -4.7555 -6.5357 32 1 6.0758 -4.4699 -2.1220 33 1 7.2849 -3.7069 -3.2868 34 1 6.7242 -1.4109 -2.3659 35 1 5.5152 -2.1740 -1.2006 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308983187.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:52 Heat of formation + Delta-G solvation = 93.795857 kcal Electronic energy + Delta-G solvation = -16678.761997 eV Core-core repulsion = 14099.949651 eV Total energy + Delta-G solvation = -2578.812345 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.34819 -36.96923 -35.25807 -32.26293 -31.92891 -30.33106 -26.97625 -26.47781 -25.46453 -22.59199 -21.53337 -21.18195 -19.41891 -18.97666 -16.59532 -15.83411 -15.04985 -14.78774 -14.74999 -14.06693 -13.79110 -13.44481 -13.24890 -12.73264 -12.03341 -11.94720 -11.83968 -11.36325 -11.19937 -11.10094 -11.02861 -10.83564 -10.76476 -10.60617 -10.39172 -10.03596 -9.30934 -9.04525 -8.96403 -8.86210 -8.52436 -8.35930 -6.27473 -4.33148 2.43087 3.18360 3.19437 3.25524 3.28400 3.57324 4.24149 4.62816 4.95959 5.01318 5.24548 5.35546 5.35774 5.58628 5.76678 5.77593 5.90511 5.96998 6.02853 6.08258 6.23233 6.24772 6.41036 6.42172 6.53924 6.63687 6.68659 6.88150 7.01921 7.16147 7.22097 7.29055 7.67243 7.70550 8.19251 8.68960 8.85825 9.33127 10.81124 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.032868 B = 0.006886 C = 0.006395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.684995 B = 4065.136661 C = 4377.154323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.005 3.995 3 C -0.138 4.138 4 C 0.205 3.795 5 N -0.559 5.559 6 C 0.264 3.736 7 N -0.344 5.344 8 C 0.164 3.836 9 C 0.027 3.973 10 C -0.494 4.494 11 H 0.061 0.939 12 C 0.072 3.928 13 N -0.883 5.883 14 Si 0.893 3.107 15 H -0.276 1.276 16 H -0.285 1.285 17 H -0.273 1.273 18 C -0.167 4.167 19 C -0.196 4.196 20 N -0.331 5.331 21 H 0.065 0.935 22 H 0.058 0.942 23 H 0.051 0.949 24 H 0.083 0.917 25 H 0.057 0.943 26 H 0.053 0.947 27 H 0.065 0.935 28 H 0.212 0.788 29 H 0.067 0.933 30 H 0.118 0.882 31 H 0.266 0.734 32 H 0.067 0.933 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.408 4.544 6.562 9.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.016 4.016 3 C -0.196 4.196 4 C -0.077 4.077 5 N -0.289 5.289 6 C -0.032 4.032 7 N -0.131 5.131 8 C 0.043 3.957 9 C 0.026 3.974 10 C -0.532 4.532 11 H 0.079 0.921 12 C -0.131 4.131 13 N -0.520 5.520 14 Si 0.720 3.280 15 H -0.202 1.202 16 H -0.211 1.211 17 H -0.198 1.198 18 C -0.205 4.205 19 C -0.233 4.233 20 N -0.160 5.160 21 H 0.084 0.916 22 H 0.077 0.923 23 H 0.070 0.930 24 H 0.102 0.898 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.084 0.916 28 H 0.228 0.772 29 H 0.085 0.915 30 H 0.136 0.864 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.101 0.899 34 H 0.094 0.906 35 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.410 4.183 6.909 9.721 hybrid contribution 0.637 -0.004 -1.354 1.497 sum -4.773 4.180 5.554 8.432 Atomic orbital electron populations 1.21746 0.93832 1.01852 1.02128 1.19315 0.95769 0.95101 0.91380 1.21742 1.01171 0.94689 1.01989 1.23914 0.96721 0.93157 0.93949 1.70261 1.28618 1.29881 1.00097 1.25820 0.91182 0.86334 0.99889 1.50665 1.36600 1.22979 1.02884 1.21771 0.92103 0.83028 0.98772 1.19160 0.87021 0.98996 0.92246 1.20472 1.47427 0.96882 0.88403 0.92070 1.24984 0.94037 0.95052 0.99063 1.69866 1.44799 1.06706 1.30642 0.86626 0.79240 0.79006 0.83112 1.20201 1.21081 1.19838 1.22803 1.01782 0.92426 1.03528 1.22843 1.05270 0.97110 0.98122 1.77855 1.22218 1.18292 0.97683 0.91634 0.92311 0.92958 0.89823 0.92354 0.92791 0.91634 0.77200 0.91450 0.86440 0.92400 0.91461 0.89935 0.90605 0.90800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.18 37.16 0.34 -1.36 16 2 C 0.01 0.08 3.39 -91.77 -0.31 -0.23 16 3 C -0.14 -1.78 9.18 37.16 0.34 -1.44 16 4 C 0.20 3.86 6.65 -156.85 -1.04 2.82 16 5 N -0.56 -10.95 11.19 -11.98 -0.13 -11.08 16 6 C 0.26 5.26 12.66 -90.65 -1.15 4.11 16 7 N -0.34 -7.25 3.50 -62.63 -0.22 -7.47 16 8 C 0.16 3.59 6.29 -4.04 -0.03 3.57 16 9 C 0.03 0.64 1.61 -155.66 -0.25 0.38 16 10 C -0.49 -12.50 8.83 -34.44 -0.30 -12.81 16 11 H 0.06 1.59 7.82 -52.49 -0.41 1.18 16 12 C 0.07 1.80 5.35 -17.82 -0.10 1.71 16 13 N -0.88 -22.66 12.04 55.43 0.67 -21.99 16 14 Si 0.89 19.70 29.54 -169.99 -5.02 14.68 16 15 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 16 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 17 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 18 C -0.17 -3.71 9.88 -26.73 -0.26 -3.98 16 19 C -0.20 -4.32 9.81 -26.73 -0.26 -4.58 16 20 N -0.33 -6.88 12.70 32.42 0.41 -6.47 16 21 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 22 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.21 3.73 8.06 -52.49 -0.42 3.31 16 29 H 0.07 1.44 7.89 -51.93 -0.41 1.03 16 30 H 0.12 2.70 6.83 -51.93 -0.35 2.34 16 31 H 0.27 6.59 8.32 -40.82 -0.34 6.25 16 32 H 0.07 1.40 8.05 -51.93 -0.42 0.98 16 33 H 0.08 1.88 8.14 -51.93 -0.42 1.46 16 34 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 35 H 0.07 1.62 8.14 -51.93 -0.42 1.19 16 LS Contribution 301.49 15.07 4.54 4.54 Total: -1.00 -27.15 301.49 -8.15 -35.30 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -5.38 Total: 4.29 kcal Atomic # 6 Polarization: -8.78 SS G_CDS: -3.02 Total: -11.81 kcal Atomic # 7 Polarization: -47.73 SS G_CDS: 0.73 Total: -47.00 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -5.02 Total: 14.68 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -27.15 -8.15 -35.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308983187.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.099 kcal (2) G-P(sol) polarization free energy of solvation -27.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds