Wall clock time and date at job start Sun Mar 29 2020 22:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47033 * 2 1 4 4 C 1.50697 * 109.46877 * 240.00145 * 2 1 3 5 5 N 1.33237 * 125.53086 * 60.42145 * 4 2 1 6 6 C 1.30831 * 109.83449 * 179.85347 * 5 4 2 7 7 N 1.34431 * 108.07192 * 0.40616 * 6 5 4 8 8 C 1.46501 * 126.82229 * 179.78840 * 7 6 5 9 9 C 1.52998 * 109.47390 * 86.05832 * 8 7 6 10 10 C 1.50700 * 115.54864 * 273.42798 * 9 8 7 11 11 H 1.07995 * 120.00463 * 114.85871 * 10 9 8 12 12 C 1.37885 * 120.00073 * 294.85802 * 10 9 8 13 13 N 1.31512 * 119.99566 * 4.14385 * 12 10 9 14 14 Si 1.86795 * 120.00124 * 184.14236 * 12 10 9 15 15 H 1.48496 * 109.47215 * 65.03949 * 14 12 10 16 16 H 1.48506 * 109.46973 * 185.03763 * 14 12 10 17 17 H 1.48505 * 109.47182 * 305.03656 * 14 12 10 18 18 C 1.52999 * 117.50333 * 127.71738 * 9 8 7 19 19 C 1.52998 * 117.49825 * 59.09284 * 9 8 7 20 20 N 1.30720 * 125.52529 * 240.73193 * 4 2 1 21 21 H 1.09000 * 109.47114 * 59.99865 * 1 2 3 22 22 H 1.08997 * 109.47156 * 299.99905 * 1 2 3 23 23 H 1.08999 * 109.47099 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47114 * 120.00135 * 2 1 3 25 25 H 1.09002 * 109.47116 * 61.91750 * 3 2 1 26 26 H 1.09000 * 109.46701 * 181.92006 * 3 2 1 27 27 H 1.09005 * 109.46780 * 301.91828 * 3 2 1 28 28 H 1.08001 * 125.96768 * 180.19664 * 6 5 4 29 29 H 1.08998 * 109.47412 * 206.06156 * 8 7 6 30 30 H 1.09003 * 109.47123 * 326.05655 * 8 7 6 31 31 H 0.97000 * 120.00288 * 185.20722 * 13 12 10 32 32 H 1.08998 * 117.49397 * 0.02562 * 18 9 8 33 33 H 1.08994 * 117.50063 * 145.02145 * 18 9 8 34 34 H 1.09004 * 117.49919 * 214.98243 * 19 9 8 35 35 H 1.08993 * 117.49964 * 0.02562 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 7 1.7858 -0.3479 -2.4887 6 6 2.3729 -1.1773 -3.3127 7 7 3.0108 -2.1087 -2.5829 8 6 3.7959 -3.2364 -3.0910 9 6 5.2335 -2.7814 -3.3501 10 6 5.4888 -2.1747 -4.7058 11 1 5.7705 -1.1354 -4.7880 12 6 5.3629 -2.9466 -5.8414 13 7 4.9413 -4.1889 -5.7485 14 14 5.7910 -2.2279 -7.5115 15 1 7.2430 -1.9206 -7.5607 16 1 5.4567 -3.2105 -8.5737 17 1 5.0135 -0.9813 -7.7280 18 6 6.3594 -3.6042 -2.7205 19 6 6.0211 -2.2193 -2.1650 20 7 2.7759 -1.7855 -1.2365 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5139 0.8900 25 1 1.7050 1.9463 0.9067 26 1 3.1295 1.4426 -0.0344 27 1 1.6488 1.9661 -0.8723 28 1 2.3465 -1.1250 -4.3912 29 1 3.7963 -4.0400 -2.3546 30 1 3.3554 -3.5961 -4.0209 31 1 4.9244 -4.7555 -6.5357 32 1 6.0758 -4.4699 -2.1220 33 1 7.2849 -3.7069 -3.2868 34 1 6.7242 -1.4109 -2.3659 35 1 5.5152 -2.1740 -1.2006 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308983187.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:51 Heat of formation + Delta-G solvation = 81.659129 kcal Electronic energy + Delta-G solvation = -16679.288285 eV Core-core repulsion = 14099.949651 eV Total energy + Delta-G solvation = -2579.338633 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.89159 -38.73345 -36.48371 -34.17820 -33.50291 -31.86651 -28.20141 -27.97100 -27.31306 -23.88800 -23.21000 -22.90714 -21.17284 -20.39195 -18.42024 -17.39987 -16.69480 -16.50637 -16.30296 -15.56979 -15.19657 -14.90273 -14.77728 -14.00997 -13.65897 -13.57411 -13.10525 -12.94105 -12.84682 -12.59630 -12.48122 -12.29767 -12.18626 -12.12076 -11.85236 -11.76526 -10.91687 -10.79662 -10.74209 -10.55713 -10.24140 -10.12464 -8.19411 -6.30427 0.86591 1.43840 1.46939 1.52832 1.59258 2.07511 2.40411 3.06537 3.29782 3.43474 3.69770 4.05530 4.09823 4.23088 4.28451 4.42918 4.46773 4.58677 4.66054 4.84425 4.87790 4.90312 4.97897 5.01446 5.08604 5.11194 5.33524 5.40568 5.45691 5.46851 5.55962 5.69446 5.71651 6.09544 6.29347 6.72622 7.30961 7.37979 8.88292 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.032868 B = 0.006886 C = 0.006395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.684995 B = 4065.136661 C = 4377.154323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.000 4.000 3 C -0.131 4.131 4 C 0.206 3.794 5 N -0.565 5.565 6 C 0.258 3.742 7 N -0.356 5.356 8 C 0.179 3.821 9 C 0.010 3.990 10 C -0.509 4.509 11 H 0.047 0.953 12 C 0.040 3.960 13 N -0.901 5.901 14 Si 0.947 3.053 15 H -0.280 1.280 16 H -0.282 1.282 17 H -0.270 1.270 18 C -0.163 4.163 19 C -0.184 4.184 20 N -0.356 5.356 21 H 0.055 0.945 22 H 0.091 0.909 23 H 0.044 0.956 24 H 0.093 0.907 25 H 0.092 0.908 26 H 0.038 0.962 27 H 0.055 0.945 28 H 0.225 0.775 29 H 0.069 0.931 30 H 0.104 0.896 31 H 0.267 0.733 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.016 5.349 7.158 10.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.021 4.021 3 C -0.189 4.189 4 C -0.076 4.076 5 N -0.294 5.294 6 C -0.038 4.038 7 N -0.143 5.143 8 C 0.057 3.943 9 C 0.009 3.991 10 C -0.547 4.547 11 H 0.066 0.934 12 C -0.162 4.162 13 N -0.538 5.538 14 Si 0.773 3.227 15 H -0.205 1.205 16 H -0.207 1.207 17 H -0.194 1.194 18 C -0.202 4.202 19 C -0.221 4.221 20 N -0.185 5.185 21 H 0.074 0.926 22 H 0.110 0.890 23 H 0.063 0.937 24 H 0.111 0.889 25 H 0.111 0.889 26 H 0.057 0.943 27 H 0.075 0.925 28 H 0.241 0.759 29 H 0.087 0.913 30 H 0.122 0.878 31 H 0.077 0.923 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -6.021 4.994 7.515 10.847 hybrid contribution 0.804 -0.214 -1.497 1.713 sum -5.217 4.780 6.018 9.289 Atomic orbital electron populations 1.21703 0.92021 1.01745 1.03319 1.19629 0.97211 0.95578 0.89641 1.21707 1.00122 0.93747 1.03346 1.24832 0.95320 0.92422 0.95031 1.70325 1.28737 1.29792 1.00521 1.26230 0.90810 0.86092 1.00693 1.50590 1.37189 1.23178 1.03324 1.21434 0.91276 0.83350 0.98202 1.19245 0.88044 0.99850 0.91998 1.20562 1.47952 0.96434 0.89707 0.93435 1.25502 0.93840 0.95297 1.01517 1.69939 1.45126 1.07402 1.31341 0.85783 0.78628 0.78481 0.79837 1.20526 1.20717 1.19442 1.22792 1.01021 0.93003 1.03350 1.22738 1.04729 0.96913 0.97727 1.77832 1.23567 1.19564 0.97566 0.92563 0.88978 0.93712 0.88907 0.88893 0.94264 0.92538 0.75853 0.91283 0.87777 0.92338 0.90084 0.90779 0.90912 0.90596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.89 9.18 71.98 0.66 -2.23 16 2 C 0.00 0.01 3.39 -11.54 -0.04 -0.03 16 3 C -0.13 -3.09 9.18 71.98 0.66 -2.43 16 4 C 0.21 7.57 6.65 138.63 0.92 8.49 16 5 N -0.56 -21.70 11.19 -191.80 -2.15 -23.85 16 6 C 0.26 10.21 12.66 180.36 2.28 12.50 16 7 N -0.36 -14.93 3.50 -352.06 -1.23 -16.16 16 8 C 0.18 7.84 6.29 86.38 0.54 8.38 16 9 C 0.01 0.47 1.61 -52.93 -0.09 0.38 16 10 C -0.51 -25.77 8.83 25.60 0.23 -25.54 16 11 H 0.05 2.48 7.82 -2.91 -0.02 2.46 16 12 C 0.04 2.00 5.35 84.66 0.45 2.45 16 13 N -0.90 -45.96 12.04 21.45 0.26 -45.70 16 14 Si 0.95 40.07 29.54 68.60 2.03 42.10 16 15 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 16 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 17 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 18 C -0.16 -7.19 9.88 30.59 0.30 -6.89 16 19 C -0.18 -8.03 9.81 30.59 0.30 -7.73 16 20 N -0.36 -14.61 12.70 -51.34 -0.65 -15.26 16 21 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 22 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 23 H 0.04 1.05 8.14 -2.39 -0.02 1.04 16 24 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 25 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.04 1.02 8.14 -2.39 -0.02 1.01 16 27 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 28 H 0.23 7.91 8.06 -2.91 -0.02 7.88 16 29 H 0.07 2.94 7.89 -2.39 -0.02 2.92 16 30 H 0.10 4.83 6.83 -2.39 -0.02 4.81 16 31 H 0.27 13.11 8.32 -92.71 -0.77 12.34 16 32 H 0.08 3.30 8.05 -2.39 -0.02 3.29 16 33 H 0.07 3.36 8.14 -2.39 -0.02 3.34 16 34 H 0.07 3.19 8.14 -2.39 -0.02 3.17 16 35 H 0.08 3.28 8.14 -2.39 -0.02 3.26 16 Total: -1.00 -56.20 301.49 5.54 -50.67 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: 1.05 Total: 20.85 kcal Atomic # 6 Polarization: -18.87 SS G_CDS: 6.23 Total: -12.64 kcal Atomic # 7 Polarization: -97.20 SS G_CDS: -3.77 Total: -100.97 kcal Atomic # 14 Polarization: 40.07 SS G_CDS: 2.03 Total: 42.10 kcal Total: -56.20 5.54 -50.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308983187.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.325 kcal (2) G-P(sol) polarization free energy of solvation -56.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds