Wall clock time and date at job start Sun Mar 29 2020 21:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.47159 * 2 1 4 4 C 1.38115 * 120.40483 * 125.00129 * 3 2 1 5 5 C 1.39622 * 118.33404 * 179.72571 * 4 3 2 6 6 N 1.38549 * 120.52871 * 179.97438 * 5 4 3 7 7 C 1.46504 * 119.99863 * 0.02562 * 6 5 4 8 8 C 1.53004 * 109.46824 * 179.97438 * 7 6 5 9 9 C 1.52998 * 109.46631 * 179.97438 * 8 7 6 10 10 C 1.50700 * 109.46707 * 180.02562 * 9 8 7 11 11 H 1.08003 * 120.00502 * 0.02562 * 10 9 8 12 12 C 1.37877 * 120.00015 * 179.97438 * 10 9 8 13 13 N 1.31519 * 120.00062 * 180.02562 * 12 10 9 14 14 Si 1.86797 * 119.99977 * 0.02562 * 12 10 9 15 15 H 1.48506 * 109.47344 * 89.99759 * 14 12 10 16 16 H 1.48502 * 109.47263 * 209.99672 * 14 12 10 17 17 H 1.48500 * 109.47406 * 329.99824 * 14 12 10 18 18 N 1.32986 * 118.93795 * 0.02562 * 5 4 3 19 19 C 1.31742 * 120.68849 * 359.97438 * 18 5 4 20 20 N 1.31788 * 121.83673 * 359.97438 * 19 18 5 21 21 H 1.09005 * 109.47126 * 299.99965 * 1 2 3 22 22 H 1.08994 * 109.47350 * 59.99991 * 1 2 3 23 23 H 1.08996 * 109.47185 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.46851 * 240.00005 * 2 1 3 25 25 H 1.08994 * 109.47350 * 120.00009 * 2 1 3 26 26 H 1.07997 * 120.83069 * 359.74722 * 4 3 2 27 27 H 0.96996 * 120.00098 * 179.97438 * 6 5 4 28 28 H 1.09002 * 109.47079 * 299.99563 * 7 6 5 29 29 H 1.09004 * 109.47139 * 59.99509 * 7 6 5 30 30 H 1.08992 * 109.46976 * 300.00279 * 8 7 6 31 31 H 1.09002 * 109.46767 * 59.99958 * 8 7 6 32 32 H 1.09000 * 109.47678 * 299.99679 * 9 8 7 33 33 H 1.08994 * 109.47573 * 60.00270 * 9 8 7 34 34 H 0.97006 * 119.99825 * 180.02562 * 13 12 10 35 35 H 1.07998 * 119.08399 * 180.02562 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9095 1.8521 0.9758 5 6 3.3519 3.1756 0.9311 6 7 4.2317 3.6563 1.8873 7 6 4.7058 2.7735 2.9562 8 6 5.6595 3.5458 3.8699 9 6 6.1541 2.6241 4.9865 10 6 7.0930 3.3848 5.8868 11 1 7.3145 4.4221 5.6833 12 6 7.6685 2.7570 6.9711 13 7 8.4876 3.4211 7.7571 14 14 7.2849 0.9631 7.3236 15 1 8.2652 0.0993 6.6177 16 1 7.3705 0.7166 8.7855 17 1 5.9141 0.6472 6.8478 18 7 2.9144 3.9677 -0.0435 19 6 2.0774 3.5140 -0.9540 20 7 1.6422 2.2702 -0.9400 21 1 -0.3634 0.5139 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 1.8932 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 3.2451 1.1822 1.7536 27 1 4.5344 4.5770 1.8487 28 1 3.8550 2.4167 3.5368 29 1 5.2300 1.9234 2.5196 30 1 6.5101 3.9023 3.2891 31 1 5.1356 4.3961 4.3065 32 1 5.3033 2.2679 5.5673 33 1 6.6778 1.7735 4.5503 34 1 8.8927 2.9792 8.5198 35 1 1.7390 4.1797 -1.7342 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309051968.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:06 Heat of formation + Delta-G solvation = 24.554972 kcal Electronic energy + Delta-G solvation = -15608.244729 eV Core-core repulsion = 13026.429873 eV Total energy + Delta-G solvation = -2581.814856 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.90673 -37.01956 -35.04239 -33.82427 -32.17652 -31.10245 -30.14019 -27.15567 -24.78747 -24.24629 -22.51336 -21.34851 -20.38699 -17.96846 -17.02251 -16.68752 -15.44758 -15.31703 -15.02605 -14.79594 -14.62516 -14.07328 -13.93417 -13.72866 -12.76614 -12.70811 -12.36923 -12.03949 -11.71860 -11.42813 -11.22056 -11.15012 -10.75917 -10.61851 -10.15489 -9.97294 -9.80628 -9.69223 -9.31143 -9.14817 -8.62276 -8.08793 -6.12244 -4.11704 1.08490 1.41957 3.08577 3.24638 3.32717 3.34337 3.92024 4.10014 4.34379 4.37415 4.75589 4.96390 5.06199 5.12112 5.21015 5.30688 5.40443 5.42964 5.55768 5.63519 5.70994 5.78835 5.89102 6.04187 6.18358 6.29230 6.44187 6.64829 6.79252 7.11321 7.25106 7.31592 7.62976 7.68512 8.32785 8.43806 8.91668 9.49124 11.01040 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.035272 B = 0.004398 C = 0.003956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.637024 B = 6364.404965 C = 7076.929564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.074 4.074 3 C 0.201 3.799 4 C -0.293 4.293 5 C 0.440 3.560 6 N -0.704 5.704 7 C 0.117 3.883 8 C -0.113 4.113 9 C -0.009 4.009 10 C -0.525 4.525 11 H 0.072 0.928 12 C 0.067 3.933 13 N -0.901 5.901 14 Si 0.881 3.119 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.265 1.265 18 N -0.589 5.589 19 C 0.337 3.663 20 N -0.569 5.569 21 H 0.052 0.948 22 H 0.066 0.934 23 H 0.058 0.942 24 H 0.085 0.915 25 H 0.080 0.920 26 H 0.140 0.860 27 H 0.408 0.592 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.019 0.981 33 H 0.014 0.986 34 H 0.264 0.736 35 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.657 -5.538 -15.030 21.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.112 4.112 3 C 0.059 3.941 4 C -0.321 4.321 5 C 0.196 3.804 6 N -0.334 5.334 7 C -0.006 4.006 8 C -0.151 4.151 9 C -0.047 4.047 10 C -0.562 4.562 11 H 0.090 0.910 12 C -0.135 4.135 13 N -0.540 5.540 14 Si 0.708 3.292 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.190 1.190 18 N -0.314 5.314 19 C 0.047 3.953 20 N -0.289 5.289 21 H 0.071 0.929 22 H 0.085 0.915 23 H 0.077 0.923 24 H 0.103 0.897 25 H 0.099 0.901 26 H 0.158 0.842 27 H 0.244 0.756 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.037 0.963 33 H 0.033 0.967 34 H 0.074 0.926 35 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -13.755 -5.114 -15.362 21.245 hybrid contribution 0.449 -0.962 1.004 1.461 sum -13.307 -6.076 -14.358 20.497 Atomic orbital electron populations 1.21643 0.93855 1.01729 1.02726 1.20512 0.97178 0.90124 1.03396 1.21315 0.89001 0.95784 0.87963 1.22021 1.07439 0.96944 1.05689 1.18637 0.86297 0.88824 0.86685 1.44864 1.46362 1.15457 1.26757 1.21822 0.98038 0.93390 0.87348 1.21698 0.97262 0.99425 0.96749 1.19495 0.96557 0.95243 0.93434 1.21081 1.26045 0.99360 1.09762 0.90968 1.25037 0.94547 0.98102 0.95774 1.69914 1.30639 1.36932 1.16512 0.86767 0.79403 0.85550 0.77481 1.20217 1.21297 1.18998 1.67955 1.18356 1.38737 1.06365 1.24557 0.87387 0.90049 0.93305 1.68171 1.29220 1.04619 1.26911 0.92916 0.91466 0.92262 0.89651 0.90104 0.84179 0.75579 0.91805 0.91816 0.91845 0.91825 0.96306 0.96734 0.92617 0.79214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 9.78 37.16 0.36 -0.84 16 2 C -0.07 -0.68 6.36 -27.88 -0.18 -0.86 16 3 C 0.20 2.48 6.19 -82.32 -0.51 1.97 16 4 C -0.29 -3.84 9.02 -39.11 -0.35 -4.20 16 5 C 0.44 6.35 7.71 -154.78 -1.19 5.16 16 6 N -0.70 -9.87 5.71 -60.26 -0.34 -10.22 16 7 C 0.12 1.71 4.93 -4.04 -0.02 1.69 16 8 C -0.11 -2.02 5.27 -26.73 -0.14 -2.16 16 9 C -0.01 -0.21 4.04 -27.88 -0.11 -0.32 16 10 C -0.52 -14.46 9.66 -34.44 -0.33 -14.80 16 11 H 0.07 2.15 7.99 -52.48 -0.42 1.73 16 12 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 13 N -0.90 -27.33 13.96 55.43 0.77 -26.56 16 14 Si 0.88 21.02 27.47 -169.99 -4.67 16.35 16 15 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 16 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 17 H -0.27 -6.00 6.54 56.52 0.37 -5.63 16 18 N -0.59 -8.43 10.47 -13.82 -0.14 -8.57 16 19 C 0.34 4.21 12.28 -92.20 -1.13 3.07 16 20 N -0.57 -7.33 10.04 -10.88 -0.11 -7.44 16 21 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 22 H 0.07 0.62 7.98 -51.93 -0.41 0.20 16 23 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.08 0.64 7.93 -51.93 -0.41 0.23 16 26 H 0.14 1.66 6.81 -52.49 -0.36 1.30 16 27 H 0.41 5.48 8.60 -40.82 -0.35 5.13 16 28 H 0.06 0.90 7.97 -51.93 -0.41 0.49 16 29 H 0.06 0.90 7.97 -51.93 -0.41 0.48 16 30 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 31 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.02 0.41 7.20 -51.93 -0.37 0.04 16 33 H 0.01 0.31 7.57 -51.93 -0.39 -0.08 16 34 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 35 H 0.19 1.69 8.06 -52.49 -0.42 1.26 16 LS Contribution 296.23 15.07 4.46 4.46 Total: -1.00 -30.90 296.23 -8.99 -39.89 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -5.25 Total: 1.56 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: -3.71 Total: -9.47 kcal Atomic # 7 Polarization: -52.96 SS G_CDS: 0.18 Total: -52.79 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.67 Total: 16.35 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -30.90 -8.99 -39.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309051968.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.444 kcal (2) G-P(sol) polarization free energy of solvation -30.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds