Wall clock time and date at job start Sun Mar 29 2020 21:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.47159 * 2 1 4 4 C 1.38115 * 120.40483 * 125.00129 * 3 2 1 5 5 C 1.39622 * 118.33404 * 179.72571 * 4 3 2 6 6 N 1.38549 * 120.52871 * 179.97438 * 5 4 3 7 7 C 1.46504 * 119.99863 * 0.02562 * 6 5 4 8 8 C 1.53004 * 109.46824 * 179.97438 * 7 6 5 9 9 C 1.52998 * 109.46631 * 179.97438 * 8 7 6 10 10 C 1.50700 * 109.46707 * 180.02562 * 9 8 7 11 11 H 1.08003 * 120.00502 * 0.02562 * 10 9 8 12 12 C 1.37877 * 120.00015 * 179.97438 * 10 9 8 13 13 N 1.31519 * 120.00062 * 180.02562 * 12 10 9 14 14 Si 1.86797 * 119.99977 * 0.02562 * 12 10 9 15 15 H 1.48506 * 109.47344 * 89.99759 * 14 12 10 16 16 H 1.48502 * 109.47263 * 209.99672 * 14 12 10 17 17 H 1.48500 * 109.47406 * 329.99824 * 14 12 10 18 18 N 1.32986 * 118.93795 * 0.02562 * 5 4 3 19 19 C 1.31742 * 120.68849 * 359.97438 * 18 5 4 20 20 N 1.31788 * 121.83673 * 359.97438 * 19 18 5 21 21 H 1.09005 * 109.47126 * 299.99965 * 1 2 3 22 22 H 1.08994 * 109.47350 * 59.99991 * 1 2 3 23 23 H 1.08996 * 109.47185 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.46851 * 240.00005 * 2 1 3 25 25 H 1.08994 * 109.47350 * 120.00009 * 2 1 3 26 26 H 1.07997 * 120.83069 * 359.74722 * 4 3 2 27 27 H 0.96996 * 120.00098 * 179.97438 * 6 5 4 28 28 H 1.09002 * 109.47079 * 299.99563 * 7 6 5 29 29 H 1.09004 * 109.47139 * 59.99509 * 7 6 5 30 30 H 1.08992 * 109.46976 * 300.00279 * 8 7 6 31 31 H 1.09002 * 109.46767 * 59.99958 * 8 7 6 32 32 H 1.09000 * 109.47678 * 299.99679 * 9 8 7 33 33 H 1.08994 * 109.47573 * 60.00270 * 9 8 7 34 34 H 0.97006 * 119.99825 * 180.02562 * 13 12 10 35 35 H 1.07998 * 119.08399 * 180.02562 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9095 1.8521 0.9758 5 6 3.3519 3.1756 0.9311 6 7 4.2317 3.6563 1.8873 7 6 4.7058 2.7735 2.9562 8 6 5.6595 3.5458 3.8699 9 6 6.1541 2.6241 4.9865 10 6 7.0930 3.3848 5.8868 11 1 7.3145 4.4221 5.6833 12 6 7.6685 2.7570 6.9711 13 7 8.4876 3.4211 7.7571 14 14 7.2849 0.9631 7.3236 15 1 8.2652 0.0993 6.6177 16 1 7.3705 0.7166 8.7855 17 1 5.9141 0.6472 6.8478 18 7 2.9144 3.9677 -0.0435 19 6 2.0774 3.5140 -0.9540 20 7 1.6422 2.2702 -0.9400 21 1 -0.3634 0.5139 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 1.8932 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 3.2451 1.1822 1.7536 27 1 4.5344 4.5770 1.8487 28 1 3.8550 2.4167 3.5368 29 1 5.2300 1.9234 2.5196 30 1 6.5101 3.9023 3.2891 31 1 5.1356 4.3961 4.3065 32 1 5.3033 2.2679 5.5673 33 1 6.6778 1.7735 4.5503 34 1 8.8927 2.9792 8.5198 35 1 1.7390 4.1797 -1.7342 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309051968.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:05 Heat of formation + Delta-G solvation = 6.002428 kcal Electronic energy + Delta-G solvation = -15609.049227 eV Core-core repulsion = 13026.429873 eV Total energy + Delta-G solvation = -2582.619354 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.87379 -38.16696 -36.08476 -35.36892 -33.81769 -32.23277 -31.19829 -28.73715 -25.67067 -25.46987 -23.86487 -22.31315 -21.92796 -19.15138 -18.76023 -17.86800 -16.60841 -16.37670 -16.27143 -15.97231 -15.79160 -15.48081 -14.79747 -14.76106 -14.54202 -14.01541 -13.77624 -13.23808 -12.81405 -12.77629 -12.39957 -12.17521 -11.96709 -11.79728 -11.73169 -11.58616 -11.48006 -11.33818 -10.76205 -10.66165 -10.13591 -9.13086 -8.29089 -6.34367 0.14114 0.41520 1.38772 1.40757 1.52237 2.01545 2.37456 2.95383 3.06866 3.27232 3.45496 3.79025 4.00074 4.16412 4.20568 4.27472 4.42526 4.45288 4.60279 4.69985 4.80026 4.86044 4.89831 5.00020 5.07652 5.19296 5.32303 5.42821 5.48076 5.54688 5.64907 5.78444 6.26301 6.29952 6.58320 6.74569 7.30638 7.35351 8.87800 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.035272 B = 0.004398 C = 0.003956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.637024 B = 6364.404965 C = 7076.929564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.074 4.074 3 C 0.196 3.804 4 C -0.302 4.302 5 C 0.424 3.576 6 N -0.707 5.707 7 C 0.132 3.868 8 C -0.104 4.104 9 C -0.008 4.008 10 C -0.536 4.536 11 H 0.029 0.971 12 C 0.000 4.000 13 N -0.954 5.954 14 Si 0.954 3.046 15 H -0.266 1.266 16 H -0.288 1.288 17 H -0.239 1.239 18 N -0.608 5.608 19 C 0.331 3.669 20 N -0.577 5.577 21 H 0.044 0.956 22 H 0.056 0.944 23 H 0.079 0.921 24 H 0.095 0.905 25 H 0.096 0.904 26 H 0.153 0.847 27 H 0.408 0.592 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.028 0.972 33 H 0.027 0.973 34 H 0.266 0.734 35 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.237 -7.934 -16.071 23.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.112 4.112 3 C 0.054 3.946 4 C -0.330 4.330 5 C 0.180 3.820 6 N -0.338 5.338 7 C 0.009 3.991 8 C -0.142 4.142 9 C -0.046 4.046 10 C -0.574 4.574 11 H 0.048 0.952 12 C -0.196 4.196 13 N -0.595 5.595 14 Si 0.777 3.223 15 H -0.191 1.191 16 H -0.214 1.214 17 H -0.162 1.162 18 N -0.334 5.334 19 C 0.042 3.958 20 N -0.297 5.297 21 H 0.063 0.937 22 H 0.075 0.925 23 H 0.098 0.902 24 H 0.113 0.887 25 H 0.115 0.885 26 H 0.171 0.829 27 H 0.244 0.756 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.046 0.954 33 H 0.045 0.955 34 H 0.075 0.925 35 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -15.358 -7.506 -16.435 23.714 hybrid contribution 0.937 -0.107 1.268 1.581 sum -14.421 -7.613 -15.167 22.270 Atomic orbital electron populations 1.21611 0.93348 1.02781 1.01801 1.20638 0.97508 0.88352 1.04652 1.21861 0.88367 0.97040 0.87318 1.22219 1.07739 0.96610 1.06395 1.18847 0.86657 0.89577 0.86905 1.44731 1.46772 1.15411 1.26849 1.21557 0.97588 0.92906 0.87060 1.21472 0.97806 0.98781 0.96122 1.19440 0.95665 0.95658 0.93848 1.21503 1.26911 0.98158 1.10853 0.95226 1.26093 0.94297 1.03681 0.95537 1.70086 1.32474 1.39428 1.17510 0.85608 0.80687 0.78799 0.77254 1.19097 1.21391 1.16160 1.67975 1.19163 1.39326 1.06934 1.25193 0.86701 0.90516 0.93429 1.68266 1.29361 1.04884 1.27226 0.93691 0.92501 0.90244 0.88651 0.88524 0.82884 0.75596 0.90810 0.90720 0.92482 0.92517 0.95372 0.95475 0.92529 0.76382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.78 71.98 0.70 -1.30 16 2 C -0.07 -1.15 6.36 29.85 0.19 -0.96 16 3 C 0.20 4.41 6.19 42.42 0.26 4.67 16 4 C -0.30 -7.27 9.02 22.57 0.20 -7.06 16 5 C 0.42 11.60 7.71 133.16 1.03 12.62 16 6 N -0.71 -18.87 5.71 -344.57 -1.97 -20.83 16 7 C 0.13 3.57 4.93 86.38 0.43 3.99 16 8 C -0.10 -3.60 5.27 30.59 0.16 -3.44 16 9 C -0.01 -0.35 4.04 29.85 0.12 -0.23 16 10 C -0.54 -30.01 9.66 25.60 0.25 -29.76 16 11 H 0.03 1.84 7.99 -2.91 -0.02 1.82 16 12 C 0.00 0.02 5.47 84.65 0.46 0.49 16 13 N -0.95 -59.37 13.96 21.45 0.30 -59.07 16 14 Si 0.95 42.47 27.47 68.60 1.88 44.35 16 15 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 16 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 17 H -0.24 -9.52 6.54 99.48 0.65 -8.87 16 18 N -0.61 -16.68 10.47 -197.62 -2.07 -18.75 16 19 C 0.33 7.74 12.28 180.90 2.22 9.96 16 20 N -0.58 -13.84 10.04 -188.34 -1.89 -15.73 16 21 H 0.04 0.72 8.14 -2.38 -0.02 0.70 16 22 H 0.06 0.94 7.98 -2.39 -0.02 0.92 16 23 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 24 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.10 1.21 7.93 -2.39 -0.02 1.19 16 26 H 0.15 3.17 6.81 -2.91 -0.02 3.15 16 27 H 0.41 10.71 8.60 -92.71 -0.80 9.91 16 28 H 0.07 1.87 7.97 -2.39 -0.02 1.85 16 29 H 0.07 1.88 7.97 -2.39 -0.02 1.86 16 30 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.03 1.16 7.20 -2.39 -0.02 1.14 16 33 H 0.03 1.10 7.57 -2.39 -0.02 1.08 16 34 H 0.27 15.42 8.31 -92.70 -0.77 14.65 16 35 H 0.22 3.47 8.06 -2.91 -0.02 3.44 16 Total: -1.00 -67.28 296.23 2.50 -64.78 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: 0.22 Total: 16.27 kcal Atomic # 6 Polarization: -17.04 SS G_CDS: 6.03 Total: -11.01 kcal Atomic # 7 Polarization: -108.76 SS G_CDS: -5.63 Total: -114.39 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 1.88 Total: 44.35 kcal Total: -67.28 2.50 -64.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309051968.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.782 kcal (2) G-P(sol) polarization free energy of solvation -67.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds