Wall clock time and date at job start Sun Mar 29 2020 21:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50701 * 109.47017 * 2 1 4 4 C 1.38113 * 120.40111 * 125.28335 * 3 2 1 5 5 C 1.39627 * 118.33102 * 180.19513 * 4 3 2 6 6 N 1.38543 * 120.52839 * 179.79864 * 5 4 3 7 7 C 1.46506 * 120.00286 * 3.18233 * 6 5 4 8 8 H 1.09001 * 109.46571 * 342.14963 * 7 6 5 9 9 C 1.50703 * 109.46971 * 222.15391 * 7 6 5 10 10 H 1.07998 * 119.99809 * 354.92501 * 9 7 6 11 11 C 1.37875 * 119.99548 * 174.92412 * 9 7 6 12 12 N 1.31512 * 120.00373 * 349.57810 * 11 9 7 13 13 Si 1.86802 * 119.99699 * 169.30312 * 11 9 7 14 14 H 1.48506 * 109.47237 * 59.99956 * 13 11 9 15 15 H 1.48498 * 109.47328 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47574 * 300.00354 * 13 11 9 17 17 C 1.53003 * 109.47259 * 102.15196 * 7 6 5 18 18 C 1.52999 * 109.46986 * 295.91217 * 17 7 6 19 19 N 1.32988 * 118.93982 * 359.52416 * 5 4 3 20 20 C 1.31751 * 120.68394 * 0.25188 * 19 5 4 21 21 N 1.31784 * 121.83359 * 359.97438 * 20 19 5 22 22 H 1.09004 * 109.47005 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47671 * 299.99893 * 1 2 3 24 24 H 1.09000 * 109.47129 * 60.00391 * 1 2 3 25 25 H 1.09005 * 109.47298 * 240.00176 * 2 1 3 26 26 H 1.09004 * 109.47733 * 120.00015 * 2 1 3 27 27 H 1.08001 * 120.83466 * 359.97438 * 4 3 2 28 28 H 0.97005 * 119.99939 * 183.17853 * 6 5 4 29 29 H 0.97001 * 119.99865 * 356.65201 * 12 11 9 30 30 H 1.09001 * 109.46945 * 55.90870 * 17 7 6 31 31 H 1.09002 * 109.46568 * 175.90743 * 17 7 6 32 32 H 1.08996 * 109.47529 * 65.37024 * 18 17 7 33 33 H 1.08998 * 109.46899 * 185.37758 * 18 17 7 34 34 H 1.09005 * 109.46555 * 305.36892 * 18 17 7 35 35 H 1.08000 * 119.08257 * 179.97438 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9139 1.8504 0.9724 5 6 3.3483 3.1768 0.9337 6 7 4.2294 3.6570 1.8890 7 6 4.7671 2.7538 2.9094 8 1 4.1470 1.8592 2.9659 9 6 4.7679 3.4497 4.2462 10 1 4.4818 4.4889 4.3140 11 6 5.1337 2.7597 5.3823 12 7 5.2831 1.4538 5.3391 13 14 5.4248 3.6806 6.9813 14 1 4.1818 4.3903 7.3772 15 1 5.8043 2.7171 8.0455 16 1 6.5189 4.6668 6.7925 17 6 6.1984 2.3598 2.5388 18 6 6.1861 1.5642 1.2319 19 7 2.9072 3.9704 -0.0381 20 6 2.0696 3.5168 -0.9484 21 7 1.6377 2.2718 -0.9366 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 3.2560 1.1783 1.7455 28 1 4.4903 4.5913 1.8821 29 1 5.0889 0.9702 4.5210 30 1 6.8012 3.2589 2.4111 31 1 6.6238 1.7469 3.3334 32 1 5.8501 2.2070 0.4183 33 1 7.1915 1.2021 1.0176 34 1 5.5077 0.7165 1.3291 35 1 1.7275 4.1838 -1.7258 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309096294.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:44 Heat of formation + Delta-G solvation = 25.798622 kcal Electronic energy + Delta-G solvation = -16687.054335 eV Core-core repulsion = 14105.293408 eV Total energy + Delta-G solvation = -2581.760927 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.44422 -36.95627 -34.74535 -33.25050 -31.62943 -30.62581 -29.76132 -26.55643 -24.36030 -23.78969 -23.00184 -21.03289 -20.18226 -17.95065 -16.96435 -16.36773 -15.02932 -14.76310 -14.53948 -14.22889 -13.86738 -13.67681 -13.49115 -13.25780 -12.80120 -12.22052 -12.13593 -11.79432 -11.39494 -11.10799 -10.94054 -10.87565 -10.69511 -10.34829 -10.34262 -10.20287 -9.83636 -9.31854 -8.87239 -8.68877 -8.48913 -7.32502 -6.59998 -4.33974 1.55948 1.94455 3.33617 3.34607 3.53341 3.81313 4.36643 4.39965 4.51362 4.79160 5.10766 5.23391 5.35045 5.42679 5.55259 5.77155 5.87793 5.90431 5.95365 6.01563 6.04703 6.11526 6.26563 6.36006 6.51166 6.58145 6.75391 6.77738 7.02237 7.21239 7.38160 7.67394 7.94193 8.27919 8.37807 8.58369 8.83158 9.35338 10.76314 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.028113 B = 0.006808 C = 0.006512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.736353 B = 4111.976661 C = 4298.503575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.072 4.072 3 C 0.193 3.807 4 C -0.290 4.290 5 C 0.446 3.554 6 N -0.677 5.677 7 C 0.259 3.741 8 H 0.044 0.956 9 C -0.617 4.617 10 H 0.057 0.943 11 C 0.031 3.969 12 N -0.898 5.898 13 Si 1.068 2.932 14 H -0.287 1.287 15 H -0.280 1.280 16 H -0.286 1.286 17 C -0.133 4.133 18 C -0.147 4.147 19 N -0.600 5.600 20 C 0.331 3.669 21 N -0.580 5.580 22 H 0.056 0.944 23 H 0.051 0.949 24 H 0.065 0.935 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.141 0.859 28 H 0.399 0.601 29 H 0.271 0.729 30 H 0.050 0.950 31 H 0.077 0.923 32 H 0.040 0.960 33 H 0.040 0.960 34 H 0.046 0.954 35 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.017 -1.270 -8.336 9.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.110 4.110 3 C 0.052 3.948 4 C -0.319 4.319 5 C 0.200 3.800 6 N -0.303 5.303 7 C 0.156 3.844 8 H 0.061 0.939 9 C -0.655 4.655 10 H 0.075 0.925 11 C -0.175 4.175 12 N -0.533 5.533 13 Si 0.895 3.105 14 H -0.214 1.214 15 H -0.206 1.206 16 H -0.212 1.212 17 C -0.173 4.173 18 C -0.204 4.204 19 N -0.327 5.327 20 C 0.041 3.959 21 N -0.301 5.301 22 H 0.075 0.925 23 H 0.071 0.929 24 H 0.084 0.916 25 H 0.099 0.901 26 H 0.097 0.903 27 H 0.158 0.842 28 H 0.234 0.766 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.095 0.905 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -3.735 -1.053 -7.224 8.200 hybrid contribution 0.016 0.196 -0.957 0.977 sum -3.719 -0.857 -8.180 9.027 Atomic orbital electron populations 1.21626 0.94147 1.01375 1.02628 1.20462 0.96942 0.90559 1.03041 1.21190 0.89561 0.95562 0.88439 1.22096 1.07073 0.97489 1.05252 1.18745 0.86099 0.88777 0.86359 1.45169 1.44025 1.13207 1.27863 1.19074 0.89951 0.90104 0.85252 0.93864 1.22056 1.51991 0.99550 0.91930 0.92454 1.25784 0.93258 0.96086 1.02368 1.70832 1.44381 1.06995 1.31073 0.83556 0.76731 0.75086 0.75124 1.21359 1.20561 1.21199 1.22053 0.99928 0.99278 0.96020 1.21825 1.00028 0.99805 0.98791 1.67968 1.18965 1.39052 1.06669 1.24395 0.87960 0.90086 0.93491 1.68093 1.30038 1.04590 1.27423 0.92539 0.92945 0.91611 0.90055 0.90293 0.84165 0.76642 0.91792 0.93130 0.90491 0.94107 0.94106 0.93495 0.79864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.78 37.15 0.36 -1.33 16 2 C -0.07 -0.97 6.36 -27.89 -0.18 -1.14 16 3 C 0.19 3.27 6.20 -82.33 -0.51 2.76 16 4 C -0.29 -5.51 8.29 -39.11 -0.32 -5.84 16 5 C 0.45 8.97 6.84 -154.78 -1.06 7.91 16 6 N -0.68 -14.17 4.73 -54.90 -0.26 -14.43 16 7 C 0.26 5.94 1.80 -69.08 -0.12 5.82 16 8 H 0.04 1.06 4.82 -51.93 -0.25 0.81 16 9 C -0.62 -15.93 8.72 -34.44 -0.30 -16.23 16 10 H 0.06 1.50 7.84 -52.49 -0.41 1.09 16 11 C 0.03 0.82 5.15 -17.82 -0.09 0.73 16 12 N -0.90 -24.71 12.87 55.43 0.71 -24.00 16 13 Si 1.07 23.58 29.92 -169.99 -5.09 18.49 16 14 H -0.29 -6.17 7.11 56.52 0.40 -5.77 16 15 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 16 H -0.29 -6.06 7.11 56.52 0.40 -5.66 16 17 C -0.13 -2.87 5.35 -26.73 -0.14 -3.01 16 18 C -0.15 -2.74 8.98 37.16 0.33 -2.41 16 19 N -0.60 -11.38 10.47 -13.81 -0.14 -11.52 16 20 C 0.33 5.51 12.28 -92.20 -1.13 4.38 16 21 N -0.58 -9.86 10.03 -10.88 -0.11 -9.97 16 22 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 23 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.06 0.82 7.98 -51.93 -0.41 0.41 16 25 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 26 H 0.08 1.00 7.93 -51.93 -0.41 0.59 16 27 H 0.14 2.72 5.68 -52.49 -0.30 2.42 16 28 H 0.40 8.11 8.89 -40.82 -0.36 7.75 16 29 H 0.27 7.35 6.36 -40.82 -0.26 7.09 16 30 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.08 1.80 6.52 -51.93 -0.34 1.47 16 32 H 0.04 0.77 7.33 -51.93 -0.38 0.39 16 33 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.05 0.85 7.73 -51.93 -0.40 0.45 16 35 H 0.18 2.33 8.06 -52.49 -0.42 1.90 16 LS Contribution 288.97 15.07 4.35 4.35 Total: -1.00 -27.92 288.97 -8.56 -36.48 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -4.86 Total: 8.96 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: -3.17 Total: -8.36 kcal Atomic # 7 Polarization: -60.13 SS G_CDS: 0.20 Total: -59.93 kcal Atomic # 14 Polarization: 23.58 SS G_CDS: -5.09 Total: 18.49 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -27.92 -8.56 -36.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309096294.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.277 kcal (2) G-P(sol) polarization free energy of solvation -27.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds