Wall clock time and date at job start Sun Mar 29 2020 21:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50701 * 109.47017 * 2 1 4 4 C 1.38113 * 120.40111 * 125.28335 * 3 2 1 5 5 C 1.39627 * 118.33102 * 180.19513 * 4 3 2 6 6 N 1.38543 * 120.52839 * 179.79864 * 5 4 3 7 7 C 1.46506 * 120.00286 * 3.18233 * 6 5 4 8 8 H 1.09001 * 109.46571 * 342.14963 * 7 6 5 9 9 C 1.50703 * 109.46971 * 222.15391 * 7 6 5 10 10 H 1.07998 * 119.99809 * 354.92501 * 9 7 6 11 11 C 1.37875 * 119.99548 * 174.92412 * 9 7 6 12 12 N 1.31512 * 120.00373 * 349.57810 * 11 9 7 13 13 Si 1.86802 * 119.99699 * 169.30312 * 11 9 7 14 14 H 1.48506 * 109.47237 * 59.99956 * 13 11 9 15 15 H 1.48498 * 109.47328 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47574 * 300.00354 * 13 11 9 17 17 C 1.53003 * 109.47259 * 102.15196 * 7 6 5 18 18 C 1.52999 * 109.46986 * 295.91217 * 17 7 6 19 19 N 1.32988 * 118.93982 * 359.52416 * 5 4 3 20 20 C 1.31751 * 120.68394 * 0.25188 * 19 5 4 21 21 N 1.31784 * 121.83359 * 359.97438 * 20 19 5 22 22 H 1.09004 * 109.47005 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47671 * 299.99893 * 1 2 3 24 24 H 1.09000 * 109.47129 * 60.00391 * 1 2 3 25 25 H 1.09005 * 109.47298 * 240.00176 * 2 1 3 26 26 H 1.09004 * 109.47733 * 120.00015 * 2 1 3 27 27 H 1.08001 * 120.83466 * 359.97438 * 4 3 2 28 28 H 0.97005 * 119.99939 * 183.17853 * 6 5 4 29 29 H 0.97001 * 119.99865 * 356.65201 * 12 11 9 30 30 H 1.09001 * 109.46945 * 55.90870 * 17 7 6 31 31 H 1.09002 * 109.46568 * 175.90743 * 17 7 6 32 32 H 1.08996 * 109.47529 * 65.37024 * 18 17 7 33 33 H 1.08998 * 109.46899 * 185.37758 * 18 17 7 34 34 H 1.09005 * 109.46555 * 305.36892 * 18 17 7 35 35 H 1.08000 * 119.08257 * 179.97438 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9139 1.8504 0.9724 5 6 3.3483 3.1768 0.9337 6 7 4.2294 3.6570 1.8890 7 6 4.7671 2.7538 2.9094 8 1 4.1470 1.8592 2.9659 9 6 4.7679 3.4497 4.2462 10 1 4.4818 4.4889 4.3140 11 6 5.1337 2.7597 5.3823 12 7 5.2831 1.4538 5.3391 13 14 5.4248 3.6806 6.9813 14 1 4.1818 4.3903 7.3772 15 1 5.8043 2.7171 8.0455 16 1 6.5189 4.6668 6.7925 17 6 6.1984 2.3598 2.5388 18 6 6.1861 1.5642 1.2319 19 7 2.9072 3.9704 -0.0381 20 6 2.0696 3.5168 -0.9484 21 7 1.6377 2.2718 -0.9366 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 3.2560 1.1783 1.7455 28 1 4.4903 4.5913 1.8821 29 1 5.0889 0.9702 4.5210 30 1 6.8012 3.2589 2.4111 31 1 6.6238 1.7469 3.3334 32 1 5.8501 2.2070 0.4183 33 1 7.1915 1.2021 1.0176 34 1 5.5077 0.7165 1.3291 35 1 1.7275 4.1838 -1.7258 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309096294.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:44 Heat of formation + Delta-G solvation = 10.768250 kcal Electronic energy + Delta-G solvation = -16687.706101 eV Core-core repulsion = 14105.293408 eV Total energy + Delta-G solvation = -2582.412693 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.86709 -38.62737 -36.09892 -34.91646 -33.31898 -32.00921 -31.18716 -28.35062 -25.62073 -25.44926 -24.58234 -22.40410 -21.85251 -19.65311 -18.62695 -17.86525 -16.49226 -16.13637 -15.97855 -15.87412 -15.59703 -15.11215 -14.73749 -14.66781 -14.41500 -13.99421 -13.52945 -13.30360 -12.65076 -12.57799 -12.46588 -12.41577 -12.10714 -11.96373 -11.90645 -11.89269 -11.40660 -10.86492 -10.59719 -10.46865 -10.10533 -8.94365 -8.65489 -6.41702 0.17619 0.48119 1.55011 1.59787 1.80060 2.23025 2.55587 2.98691 3.10407 3.27940 3.49433 3.85012 4.11910 4.22854 4.28321 4.29209 4.39665 4.43930 4.54648 4.72268 4.75026 4.87760 5.01011 5.03609 5.08212 5.14954 5.18258 5.35180 5.45644 5.53099 5.77066 5.81563 6.12855 6.43412 6.59102 6.77036 7.32309 7.41690 8.69404 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.028113 B = 0.006808 C = 0.006512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.736353 B = 4111.976661 C = 4298.503575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.073 4.073 3 C 0.198 3.802 4 C -0.310 4.310 5 C 0.432 3.568 6 N -0.684 5.684 7 C 0.267 3.733 8 H 0.027 0.973 9 C -0.630 4.630 10 H 0.049 0.951 11 C -0.011 4.011 12 N -0.920 5.920 13 Si 1.110 2.890 14 H -0.277 1.277 15 H -0.283 1.283 16 H -0.271 1.271 17 C -0.125 4.125 18 C -0.133 4.133 19 N -0.612 5.612 20 C 0.330 3.670 21 N -0.578 5.578 22 H 0.082 0.918 23 H 0.039 0.961 24 H 0.062 0.938 25 H 0.100 0.900 26 H 0.084 0.916 27 H 0.130 0.870 28 H 0.399 0.601 29 H 0.263 0.737 30 H 0.047 0.953 31 H 0.054 0.946 32 H 0.038 0.962 33 H 0.060 0.940 34 H 0.046 0.954 35 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.599 -1.341 -9.392 10.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.111 4.111 3 C 0.057 3.943 4 C -0.338 4.338 5 C 0.188 3.812 6 N -0.310 5.310 7 C 0.163 3.837 8 H 0.045 0.955 9 C -0.668 4.668 10 H 0.067 0.933 11 C -0.212 4.212 12 N -0.555 5.555 13 Si 0.932 3.068 14 H -0.203 1.203 15 H -0.208 1.208 16 H -0.196 1.196 17 C -0.164 4.164 18 C -0.191 4.191 19 N -0.339 5.339 20 C 0.041 3.959 21 N -0.299 5.299 22 H 0.101 0.899 23 H 0.058 0.942 24 H 0.081 0.919 25 H 0.118 0.882 26 H 0.102 0.898 27 H 0.147 0.853 28 H 0.234 0.766 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.057 0.943 33 H 0.079 0.921 34 H 0.065 0.935 35 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -4.336 -1.114 -8.321 9.449 hybrid contribution 0.108 0.215 -0.739 0.777 sum -4.229 -0.899 -9.061 10.039 Atomic orbital electron populations 1.21594 0.92902 1.02903 1.01799 1.20612 0.97885 0.88407 1.04207 1.21752 0.88159 0.97119 0.87269 1.22118 1.08491 0.97122 1.06094 1.18904 0.86248 0.89447 0.86641 1.44922 1.45050 1.12861 1.28216 1.18801 0.90505 0.89486 0.84878 0.95507 1.22374 1.51556 0.99295 0.93574 0.93297 1.26985 0.92757 0.96189 1.05317 1.70920 1.46018 1.07731 1.30838 0.83003 0.77427 0.74397 0.71955 1.20313 1.20788 1.19645 1.21880 0.98656 0.99130 0.96765 1.21674 1.01286 0.99230 0.96864 1.68015 1.19726 1.39216 1.06933 1.25246 0.86704 0.90591 0.93399 1.68240 1.29788 1.04765 1.27155 0.89907 0.94205 0.91921 0.88179 0.89786 0.85268 0.76643 0.92657 0.93372 0.92707 0.94335 0.92055 0.93452 0.75968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.94 9.78 71.98 0.70 -2.23 16 2 C -0.07 -1.82 6.36 29.85 0.19 -1.63 16 3 C 0.20 6.46 6.20 42.42 0.26 6.72 16 4 C -0.31 -11.73 8.29 22.58 0.19 -11.54 16 5 C 0.43 17.33 6.84 133.16 0.91 18.24 16 6 N -0.68 -28.99 4.73 -327.61 -1.55 -30.55 16 7 C 0.27 12.51 1.80 44.25 0.08 12.59 16 8 H 0.03 1.37 4.82 -2.39 -0.01 1.35 16 9 C -0.63 -33.05 8.72 25.60 0.22 -32.83 16 10 H 0.05 2.59 7.84 -2.91 -0.02 2.57 16 11 C -0.01 -0.60 5.15 84.65 0.44 -0.16 16 12 N -0.92 -51.42 12.87 21.45 0.28 -51.14 16 13 Si 1.11 47.46 29.92 68.60 2.05 49.51 16 14 H -0.28 -11.34 7.11 99.48 0.71 -10.63 16 15 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 16 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 17 C -0.12 -5.43 5.35 30.59 0.16 -5.27 16 18 C -0.13 -4.89 8.98 71.98 0.65 -4.25 16 19 N -0.61 -22.57 10.47 -197.62 -2.07 -24.64 16 20 C 0.33 10.28 12.28 180.90 2.22 12.50 16 21 N -0.58 -18.46 10.03 -188.34 -1.89 -20.35 16 22 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 23 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 24 H 0.06 1.41 7.98 -2.39 -0.02 1.39 16 25 H 0.10 2.15 8.14 -2.38 -0.02 2.13 16 26 H 0.08 2.00 7.93 -2.39 -0.02 1.98 16 27 H 0.13 5.14 5.68 -2.91 -0.02 5.12 16 28 H 0.40 16.47 8.89 -92.70 -0.82 15.65 16 29 H 0.26 14.68 6.36 -92.71 -0.59 14.09 16 30 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.05 2.62 6.52 -2.39 -0.02 2.60 16 32 H 0.04 1.42 7.33 -2.39 -0.02 1.40 16 33 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.05 1.71 7.73 -2.38 -0.02 1.69 16 35 H 0.22 4.91 8.06 -2.91 -0.02 4.88 16 Total: -1.00 -59.33 288.97 3.29 -56.04 By element: Atomic # 1 Polarization: 28.53 SS G_CDS: 0.45 Total: 28.98 kcal Atomic # 6 Polarization: -13.88 SS G_CDS: 6.03 Total: -7.85 kcal Atomic # 7 Polarization: -121.44 SS G_CDS: -5.23 Total: -126.67 kcal Atomic # 14 Polarization: 47.46 SS G_CDS: 2.05 Total: 49.51 kcal Total: -59.33 3.29 -56.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309096294.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.809 kcal (2) G-P(sol) polarization free energy of solvation -59.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds