Wall clock time and date at job start Sun Mar 29 2020 22:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.46952 * 2 1 4 4 H 1.08998 * 109.46889 * 55.00346 * 3 2 1 5 5 C 1.50706 * 109.46708 * 174.99814 * 3 2 1 6 6 H 1.08000 * 119.99302 * 120.00101 * 5 3 2 7 7 C 1.37871 * 120.00436 * 299.72635 * 5 3 2 8 8 N 1.31515 * 119.99684 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00405 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47050 * 59.99579 * 9 7 5 11 11 H 1.48496 * 109.47289 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46492 * 299.99554 * 9 7 5 13 13 N 1.46493 * 109.47438 * 294.99761 * 3 2 1 14 14 C 1.38406 * 119.99957 * 84.99773 * 13 3 2 15 15 N 1.32494 * 119.21519 * 359.73773 * 14 13 3 16 16 C 1.32281 * 120.73633 * 179.71429 * 15 14 13 17 17 C 1.50705 * 120.39904 * 180.29964 * 16 15 14 18 18 C 1.38603 * 119.20184 * 0.54111 * 16 15 14 19 19 C 1.38610 * 118.55204 * 359.73533 * 18 16 15 20 20 C 1.50702 * 120.39619 * 179.97438 * 19 18 16 21 21 N 1.32268 * 119.20075 * 359.97438 * 19 18 16 22 22 H 1.08993 * 109.47051 * 59.99738 * 1 2 3 23 23 H 1.09001 * 109.46837 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.46997 * 300.00077 * 1 2 3 25 25 H 1.08996 * 109.46997 * 239.99923 * 2 1 3 26 26 H 1.09002 * 109.46847 * 120.00241 * 2 1 3 27 27 H 0.97004 * 120.00247 * 180.02562 * 8 7 5 28 28 H 0.97001 * 120.00269 * 265.01038 * 13 3 2 29 29 H 1.09001 * 109.46760 * 270.25020 * 17 16 15 30 30 H 1.09006 * 109.47004 * 30.24468 * 17 16 15 31 31 H 1.08995 * 109.46839 * 150.24845 * 17 16 15 32 32 H 1.07997 * 120.72509 * 179.75354 * 18 16 15 33 33 H 1.09005 * 109.47060 * 270.02105 * 20 19 18 34 34 H 1.08999 * 109.47575 * 30.01423 * 20 19 18 35 35 H 1.08993 * 109.47146 * 150.02288 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5420 1.4442 0.1239 6 1 4.1472 1.8888 -0.6523 7 6 4.1431 0.8834 1.2306 8 7 3.4058 0.3473 2.1786 9 14 6.0048 0.8862 1.3845 10 1 6.4999 2.2862 1.3781 11 1 6.3973 0.2286 2.6568 12 1 6.5970 0.1464 0.2411 13 7 1.6525 2.0975 -1.2517 14 6 0.4024 2.6796 -1.3700 15 7 -0.4334 2.6308 -0.3432 16 6 -1.6333 3.1821 -0.4214 17 6 -2.5755 3.1280 0.7535 18 6 -2.0155 3.8058 -1.5988 19 6 -1.1186 3.8336 -2.6551 20 6 -1.4911 4.5001 -3.9544 21 7 0.0682 3.2682 -2.5091 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 3.8286 -0.0470 2.9575 28 1 2.2720 2.1231 -1.9978 29 1 -3.1842 2.2260 0.6898 30 1 -2.0009 3.1138 1.6797 31 1 -3.2228 4.0048 0.7408 32 1 -2.9908 4.2604 -1.6909 33 1 -1.9623 3.7717 -4.6144 34 1 -2.1870 5.3157 -3.7580 35 1 -0.5937 4.8948 -4.4307 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309163391.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:11 Heat of formation + Delta-G solvation = 43.081057 kcal Electronic energy + Delta-G solvation = -16759.246961 eV Core-core repulsion = 14178.235457 eV Total energy + Delta-G solvation = -2581.011504 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.41503 -36.36153 -34.21456 -33.26365 -31.53436 -30.22337 -28.86382 -27.22593 -26.57397 -23.19787 -21.98044 -21.38641 -19.49873 -17.51498 -16.57064 -15.82567 -15.01904 -14.94354 -14.79261 -13.73920 -13.44604 -13.27866 -13.02680 -12.74520 -12.58050 -12.31968 -12.05458 -11.79649 -11.54528 -11.24652 -10.96697 -10.84190 -10.45213 -10.23632 -10.11294 -9.75656 -9.52788 -9.40270 -8.97941 -8.48827 -8.32944 -7.08008 -6.11918 -4.20401 1.74915 1.84111 3.27108 3.31689 3.33639 3.82852 4.36043 4.48812 4.63784 4.85510 5.19693 5.32939 5.55825 5.61373 5.67746 5.69032 5.80718 5.90263 6.02021 6.25110 6.30313 6.39020 6.45564 6.63485 6.91648 7.05584 7.19771 7.38395 7.52258 7.66652 7.78325 7.86120 8.00882 8.22834 8.62051 8.78845 9.20136 9.46520 10.93552 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.033438 B = 0.006845 C = 0.006199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.164310 B = 4089.757198 C = 4515.736406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.127 4.127 3 C 0.282 3.718 4 H 0.055 0.945 5 C -0.535 4.535 6 H 0.060 0.940 7 C 0.068 3.932 8 N -0.883 5.883 9 Si 0.902 3.098 10 H -0.277 1.277 11 H -0.285 1.285 12 H -0.276 1.276 13 N -0.671 5.671 14 C 0.575 3.425 15 N -0.553 5.553 16 C 0.213 3.787 17 C -0.102 4.102 18 C -0.320 4.320 19 C 0.212 3.788 20 C -0.100 4.100 21 N -0.593 5.593 22 H 0.030 0.970 23 H 0.020 0.980 24 H 0.055 0.945 25 H 0.029 0.971 26 H 0.100 0.900 27 H 0.265 0.735 28 H 0.402 0.598 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.129 0.871 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.442 5.040 -5.786 12.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.166 4.166 3 C 0.180 3.820 4 H 0.073 0.927 5 C -0.574 4.574 6 H 0.078 0.922 7 C -0.135 4.135 8 N -0.520 5.520 9 Si 0.729 3.271 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.300 5.300 14 C 0.218 3.782 15 N -0.278 5.278 16 C 0.063 3.937 17 C -0.160 4.160 18 C -0.348 4.348 19 C 0.063 3.937 20 C -0.158 4.158 21 N -0.319 5.319 22 H 0.049 0.951 23 H 0.039 0.961 24 H 0.074 0.926 25 H 0.048 0.952 26 H 0.118 0.882 27 H 0.075 0.925 28 H 0.237 0.763 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.147 0.853 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.368 4.375 -5.297 11.617 hybrid contribution 0.415 0.292 -0.297 0.588 sum -8.952 4.667 -5.594 11.542 Atomic orbital electron populations 1.21809 0.98507 0.97621 1.00863 1.21944 0.92601 0.99899 1.02153 1.18839 0.93976 0.88986 0.80236 0.92708 1.21214 0.90765 1.39174 1.06201 0.92160 1.24845 0.98599 0.94764 0.95296 1.69884 1.35178 1.37867 1.09097 0.86506 0.84846 0.78331 0.77424 1.20209 1.21098 1.20146 1.45205 1.09934 1.56006 1.18889 1.19518 0.87918 0.86553 0.84175 1.68083 1.04325 1.24406 1.30960 1.21355 0.90774 0.87664 0.93943 1.20706 0.97152 1.02428 0.95689 1.21888 1.03003 1.13380 0.96508 1.21195 0.87949 0.89608 0.94967 1.20685 1.02234 0.99813 0.93064 1.67752 1.20363 1.18428 1.25376 0.95095 0.96122 0.92593 0.95226 0.88221 0.92528 0.76259 0.90297 0.90158 0.90844 0.85302 0.90412 0.90740 0.90557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.88 8.43 37.16 0.31 -2.56 16 2 C -0.13 -3.11 5.45 -26.73 -0.15 -3.26 16 3 C 0.28 7.17 2.24 -69.08 -0.15 7.01 16 4 H 0.06 1.56 7.51 -51.93 -0.39 1.17 16 5 C -0.54 -14.43 8.72 -34.44 -0.30 -14.73 16 6 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 7 C 0.07 1.84 5.29 -17.82 -0.09 1.74 16 8 N -0.88 -24.59 11.32 55.43 0.63 -23.96 16 9 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 10 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 13 N -0.67 -15.29 5.15 -56.93 -0.29 -15.59 16 14 C 0.58 12.49 7.00 -322.80 -2.26 10.23 16 15 N -0.55 -11.57 6.28 -10.15 -0.06 -11.63 16 16 C 0.21 3.64 6.82 -82.26 -0.56 3.08 16 17 C -0.10 -1.32 10.22 36.01 0.37 -0.95 16 18 C -0.32 -4.88 9.53 -39.31 -0.37 -5.25 16 19 C 0.21 3.44 6.82 -82.27 -0.56 2.88 16 20 C -0.10 -1.15 10.22 36.01 0.37 -0.78 16 21 N -0.59 -11.71 10.40 -10.15 -0.11 -11.81 16 22 H 0.03 0.68 5.59 -51.93 -0.29 0.39 16 23 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 24 H 0.06 1.25 7.64 -51.93 -0.40 0.85 16 25 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.10 2.67 5.98 -51.93 -0.31 2.36 16 27 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 28 H 0.40 8.70 8.65 -40.82 -0.35 8.35 16 29 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.07 0.74 8.09 -51.93 -0.42 0.32 16 32 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 33 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.66 8.09 -51.93 -0.42 0.24 16 35 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 289.26 15.07 4.36 4.36 Total: -1.00 -29.52 289.26 -8.98 -38.50 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -5.08 Total: 6.87 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: -3.40 Total: -2.58 kcal Atomic # 7 Polarization: -63.16 SS G_CDS: 0.16 Total: -63.00 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -29.52 -8.98 -38.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309163391.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.582 kcal (2) G-P(sol) polarization free energy of solvation -29.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds