Wall clock time and date at job start Sun Mar 29 2020 22:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.46952 * 2 1 4 4 H 1.08998 * 109.46889 * 55.00346 * 3 2 1 5 5 C 1.50706 * 109.46708 * 174.99814 * 3 2 1 6 6 H 1.08000 * 119.99302 * 120.00101 * 5 3 2 7 7 C 1.37871 * 120.00436 * 299.72635 * 5 3 2 8 8 N 1.31515 * 119.99684 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00405 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47050 * 59.99579 * 9 7 5 11 11 H 1.48496 * 109.47289 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46492 * 299.99554 * 9 7 5 13 13 N 1.46493 * 109.47438 * 294.99761 * 3 2 1 14 14 C 1.38406 * 119.99957 * 84.99773 * 13 3 2 15 15 N 1.32494 * 119.21519 * 359.73773 * 14 13 3 16 16 C 1.32281 * 120.73633 * 179.71429 * 15 14 13 17 17 C 1.50705 * 120.39904 * 180.29964 * 16 15 14 18 18 C 1.38603 * 119.20184 * 0.54111 * 16 15 14 19 19 C 1.38610 * 118.55204 * 359.73533 * 18 16 15 20 20 C 1.50702 * 120.39619 * 179.97438 * 19 18 16 21 21 N 1.32268 * 119.20075 * 359.97438 * 19 18 16 22 22 H 1.08993 * 109.47051 * 59.99738 * 1 2 3 23 23 H 1.09001 * 109.46837 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.46997 * 300.00077 * 1 2 3 25 25 H 1.08996 * 109.46997 * 239.99923 * 2 1 3 26 26 H 1.09002 * 109.46847 * 120.00241 * 2 1 3 27 27 H 0.97004 * 120.00247 * 180.02562 * 8 7 5 28 28 H 0.97001 * 120.00269 * 265.01038 * 13 3 2 29 29 H 1.09001 * 109.46760 * 270.25020 * 17 16 15 30 30 H 1.09006 * 109.47004 * 30.24468 * 17 16 15 31 31 H 1.08995 * 109.46839 * 150.24845 * 17 16 15 32 32 H 1.07997 * 120.72509 * 179.75354 * 18 16 15 33 33 H 1.09005 * 109.47060 * 270.02105 * 20 19 18 34 34 H 1.08999 * 109.47575 * 30.01423 * 20 19 18 35 35 H 1.08993 * 109.47146 * 150.02288 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5420 1.4442 0.1239 6 1 4.1472 1.8888 -0.6523 7 6 4.1431 0.8834 1.2306 8 7 3.4058 0.3473 2.1786 9 14 6.0048 0.8862 1.3845 10 1 6.4999 2.2862 1.3781 11 1 6.3973 0.2286 2.6568 12 1 6.5970 0.1464 0.2411 13 7 1.6525 2.0975 -1.2517 14 6 0.4024 2.6796 -1.3700 15 7 -0.4334 2.6308 -0.3432 16 6 -1.6333 3.1821 -0.4214 17 6 -2.5755 3.1280 0.7535 18 6 -2.0155 3.8058 -1.5988 19 6 -1.1186 3.8336 -2.6551 20 6 -1.4911 4.5001 -3.9544 21 7 0.0682 3.2682 -2.5091 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 3.8286 -0.0470 2.9575 28 1 2.2720 2.1231 -1.9978 29 1 -3.1842 2.2260 0.6898 30 1 -2.0009 3.1138 1.6797 31 1 -3.2228 4.0048 0.7408 32 1 -2.9908 4.2604 -1.6909 33 1 -1.9623 3.7717 -4.6144 34 1 -2.1870 5.3157 -3.7580 35 1 -0.5937 4.8948 -4.4307 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309163391.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:10 Heat of formation + Delta-G solvation = 26.287277 kcal Electronic energy + Delta-G solvation = -16759.975194 eV Core-core repulsion = 14178.235457 eV Total energy + Delta-G solvation = -2581.739737 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.82308 -38.11564 -35.51608 -35.01172 -33.32736 -31.85976 -30.07482 -28.81287 -28.00820 -25.10252 -23.54731 -22.75936 -21.28439 -19.20113 -18.15533 -17.58118 -16.76331 -16.45077 -16.18628 -15.53331 -14.82935 -14.65653 -14.37119 -14.17688 -13.84178 -13.59836 -13.28235 -13.23921 -13.16342 -12.87349 -12.81605 -12.67180 -12.20587 -12.06399 -11.66870 -11.51652 -11.12804 -11.00858 -10.81175 -10.45533 -9.80676 -8.68535 -8.17327 -6.33592 0.42512 0.47359 1.42396 1.44030 1.51874 2.23255 2.47028 3.07461 3.12806 3.38533 3.71005 3.99909 4.44423 4.52245 4.55706 4.57451 4.62320 4.75218 4.80056 4.82647 4.87222 5.02899 5.05844 5.11619 5.26566 5.27407 5.46508 5.54404 5.60933 5.83238 5.85569 6.08151 6.24642 6.46344 6.76891 6.94589 7.34624 7.69691 8.87668 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.033438 B = 0.006845 C = 0.006199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.164310 B = 4089.757198 C = 4515.736406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.119 4.119 3 C 0.298 3.702 4 H 0.016 0.984 5 C -0.556 4.556 6 H 0.060 0.940 7 C 0.022 3.978 8 N -0.909 5.909 9 Si 0.967 3.033 10 H -0.274 1.274 11 H -0.280 1.280 12 H -0.269 1.269 13 N -0.684 5.684 14 C 0.555 3.445 15 N -0.587 5.587 16 C 0.190 3.810 17 C -0.098 4.098 18 C -0.302 4.302 19 C 0.194 3.806 20 C -0.095 4.095 21 N -0.611 5.611 22 H 0.028 0.972 23 H 0.038 0.962 24 H 0.046 0.954 25 H 0.025 0.975 26 H 0.075 0.925 27 H 0.266 0.734 28 H 0.402 0.598 29 H 0.093 0.907 30 H 0.063 0.937 31 H 0.109 0.891 32 H 0.174 0.826 33 H 0.094 0.906 34 H 0.107 0.893 35 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.990 6.022 -6.765 15.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.159 4.159 3 C 0.194 3.806 4 H 0.034 0.966 5 C -0.594 4.594 6 H 0.078 0.922 7 C -0.179 4.179 8 N -0.547 5.547 9 Si 0.792 3.208 10 H -0.199 1.199 11 H -0.205 1.205 12 H -0.194 1.194 13 N -0.317 5.317 14 C 0.198 3.802 15 N -0.313 5.313 16 C 0.042 3.958 17 C -0.155 4.155 18 C -0.328 4.328 19 C 0.047 3.953 20 C -0.152 4.152 21 N -0.338 5.338 22 H 0.047 0.953 23 H 0.057 0.943 24 H 0.065 0.935 25 H 0.044 0.956 26 H 0.093 0.907 27 H 0.076 0.924 28 H 0.238 0.762 29 H 0.111 0.889 30 H 0.082 0.918 31 H 0.128 0.872 32 H 0.192 0.808 33 H 0.113 0.887 34 H 0.126 0.874 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -10.989 5.394 -6.298 13.766 hybrid contribution 0.727 0.089 -0.037 0.733 sum -10.262 5.482 -6.335 13.247 Atomic orbital electron populations 1.21591 0.96507 0.98487 1.00278 1.21786 0.94316 0.99209 1.00560 1.18358 0.92994 0.88906 0.80328 0.96598 1.21543 0.91875 1.39455 1.06554 0.92228 1.25657 1.03093 0.94251 0.94860 1.70012 1.36932 1.38288 1.09471 0.85480 0.79350 0.78348 0.77638 1.19940 1.20503 1.19378 1.44850 1.11122 1.57725 1.17968 1.19618 0.87750 0.87544 0.85319 1.68075 1.05944 1.25985 1.31306 1.22163 0.90143 0.87277 0.96170 1.20814 0.96618 1.04810 0.93225 1.22390 1.04312 1.11127 0.94969 1.22134 0.86950 0.88877 0.97301 1.20817 1.02924 1.00754 0.90702 1.67788 1.22340 1.18965 1.24659 0.95274 0.94320 0.93480 0.95636 0.90667 0.92426 0.76215 0.88879 0.91788 0.87203 0.80820 0.88708 0.87449 0.90921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.98 8.43 71.98 0.61 -4.37 16 2 C -0.12 -6.07 5.45 30.60 0.17 -5.90 16 3 C 0.30 15.81 2.24 44.25 0.10 15.91 16 4 H 0.02 0.97 7.51 -2.39 -0.02 0.95 16 5 C -0.56 -30.94 8.72 25.60 0.22 -30.72 16 6 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 7 C 0.02 1.21 5.29 84.65 0.45 1.66 16 8 N -0.91 -52.00 11.32 21.45 0.24 -51.75 16 9 Si 0.97 43.30 29.54 68.60 2.03 45.32 16 10 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 11 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 12 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 13 N -0.68 -32.47 5.15 -334.02 -1.72 -34.19 16 14 C 0.55 24.54 7.00 261.49 1.83 26.37 16 15 N -0.59 -24.88 6.28 -186.03 -1.17 -26.05 16 16 C 0.19 6.23 6.82 42.58 0.29 6.52 16 17 C -0.10 -2.31 10.22 71.24 0.73 -1.58 16 18 C -0.30 -8.21 9.53 22.45 0.21 -7.99 16 19 C 0.19 5.88 6.82 42.58 0.29 6.17 16 20 C -0.09 -1.82 10.22 71.24 0.73 -1.10 16 21 N -0.61 -23.92 10.40 -186.04 -1.93 -25.85 16 22 H 0.03 1.29 5.59 -2.39 -0.01 1.28 16 23 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 24 H 0.05 2.15 7.64 -2.39 -0.02 2.14 16 25 H 0.02 1.26 8.14 -2.39 -0.02 1.25 16 26 H 0.08 4.19 5.98 -2.39 -0.01 4.17 16 27 H 0.27 14.41 8.31 -92.71 -0.77 13.64 16 28 H 0.40 18.23 8.65 -92.71 -0.80 17.42 16 29 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 31 H 0.11 1.76 8.09 -2.39 -0.02 1.74 16 32 H 0.17 3.08 8.06 -2.91 -0.02 3.06 16 33 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16 34 H 0.11 1.37 8.09 -2.39 -0.02 1.35 16 35 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -66.35 289.26 3.35 -62.99 By element: Atomic # 1 Polarization: 24.28 SS G_CDS: 0.28 Total: 24.56 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: 5.63 Total: 4.96 kcal Atomic # 7 Polarization: -133.27 SS G_CDS: -4.58 Total: -137.85 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.32 kcal Total: -66.35 3.35 -62.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309163391.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.282 kcal (2) G-P(sol) polarization free energy of solvation -66.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds