Wall clock time and date at job start Sun Mar 29 2020 22:05:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.47139 * 2 1 4 4 H 1.08999 * 109.46802 * 304.99860 * 3 2 1 5 5 C 1.50703 * 109.46963 * 185.00034 * 3 2 1 6 6 H 1.07995 * 120.00009 * 240.00155 * 5 3 2 7 7 C 1.37878 * 119.99689 * 59.99881 * 5 3 2 8 8 N 1.31508 * 120.00541 * 0.02562 * 7 5 3 9 9 Si 1.86807 * 119.99577 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47145 * 59.99911 * 9 7 5 11 11 H 1.48499 * 109.46916 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.46844 * 300.00058 * 9 7 5 13 13 N 1.46498 * 109.47071 * 64.99871 * 3 2 1 14 14 C 1.38405 * 120.00241 * 274.99782 * 13 3 2 15 15 N 1.32494 * 119.21430 * 359.45979 * 14 13 3 16 16 C 1.32277 * 120.73841 * 179.72095 * 15 14 13 17 17 C 1.50696 * 120.40318 * 180.25150 * 16 15 14 18 18 C 1.38608 * 119.19678 * 0.53884 * 16 15 14 19 19 C 1.38606 * 118.55898 * 359.73449 * 18 16 15 20 20 C 1.50689 * 120.40257 * 179.97438 * 19 18 16 21 21 N 1.32279 * 119.19607 * 359.97438 * 19 18 16 22 22 H 1.09000 * 109.46886 * 300.00028 * 1 2 3 23 23 H 1.09002 * 109.46841 * 60.00075 * 1 2 3 24 24 H 1.08991 * 109.47055 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46886 * 239.99972 * 2 1 3 26 26 H 1.09002 * 109.46841 * 119.99925 * 2 1 3 27 27 H 0.96996 * 120.00555 * 180.02562 * 8 7 5 28 28 H 0.97005 * 119.99891 * 94.72466 * 13 3 2 29 29 H 1.09004 * 109.47279 * 270.29720 * 17 16 15 30 30 H 1.09006 * 109.47049 * 30.29306 * 17 16 15 31 31 H 1.09001 * 109.47736 * 150.29143 * 17 16 15 32 32 H 1.07992 * 120.71909 * 179.75623 * 18 16 15 33 33 H 1.08999 * 109.47724 * 270.02244 * 20 19 18 34 34 H 1.09000 * 109.47044 * 30.02603 * 20 19 18 35 35 H 1.09002 * 109.47327 * 150.02108 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5420 1.4443 -0.1238 6 1 4.1473 1.8888 0.6523 7 6 4.1433 0.8783 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0051 0.8798 -1.3811 10 1 6.5967 0.1451 -0.2343 11 1 6.3978 0.2165 -2.6504 12 1 6.5005 2.2797 -1.3808 13 7 1.6525 2.0975 1.2518 14 6 0.4024 2.6797 1.3700 15 7 -0.4274 2.6450 0.3377 16 6 -1.6312 3.1872 0.4194 17 6 -2.5710 3.1385 -0.7576 18 6 -2.0155 3.8058 1.5987 19 6 -1.1207 3.8288 2.6570 20 6 -1.4952 4.4907 3.9580 21 7 0.0659 3.2627 2.5112 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 3.8293 -0.0611 -2.9499 28 1 2.2705 2.1196 1.9992 29 1 -2.4149 4.0169 -1.3838 30 1 -2.3772 2.2378 -1.3403 31 1 -3.6007 3.1253 -0.4002 32 1 -2.9910 4.2598 1.6910 33 1 -1.2033 5.5405 3.9288 34 1 -2.5725 4.4171 4.1062 35 1 -0.9806 3.9933 4.7801 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309163392.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:13 Heat of formation + Delta-G solvation = 25.919588 kcal Electronic energy + Delta-G solvation = -16759.884127 eV Core-core repulsion = 14178.128446 eV Total energy + Delta-G solvation = -2581.755681 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.82252 -38.11513 -35.51686 -35.01406 -33.32955 -31.85322 -30.07776 -28.81668 -28.00754 -25.10324 -23.54531 -22.76236 -21.28246 -19.20063 -18.15635 -17.58193 -16.76597 -16.45330 -16.17508 -15.52931 -14.83997 -14.67036 -14.35574 -14.18685 -13.83893 -13.59532 -13.31862 -13.21543 -13.15783 -12.86758 -12.81908 -12.67045 -12.20276 -12.06152 -11.67672 -11.51223 -11.13186 -11.01502 -10.81089 -10.45567 -9.80729 -8.68489 -8.17185 -6.33507 0.42464 0.47346 1.42426 1.44036 1.51894 2.23276 2.47037 3.07454 3.12823 3.38530 3.71024 3.99859 4.44377 4.51884 4.55627 4.57113 4.62457 4.75219 4.79754 4.82520 4.87251 5.02678 5.05526 5.11487 5.26286 5.27423 5.46248 5.54728 5.61157 5.83066 5.85537 6.08388 6.24756 6.46405 6.76927 6.94576 7.34678 7.69702 8.87703 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.033464 B = 0.006842 C = 0.006199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.510713 B = 4091.582156 C = 4515.617968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.120 4.120 3 C 0.297 3.703 4 H 0.017 0.983 5 C -0.556 4.556 6 H 0.059 0.941 7 C 0.022 3.978 8 N -0.909 5.909 9 Si 0.967 3.033 10 H -0.269 1.269 11 H -0.280 1.280 12 H -0.274 1.274 13 N -0.684 5.684 14 C 0.555 3.445 15 N -0.588 5.588 16 C 0.191 3.809 17 C -0.098 4.098 18 C -0.302 4.302 19 C 0.195 3.805 20 C -0.095 4.095 21 N -0.611 5.611 22 H 0.028 0.972 23 H 0.046 0.954 24 H 0.038 0.962 25 H 0.076 0.924 26 H 0.025 0.975 27 H 0.267 0.733 28 H 0.402 0.598 29 H 0.091 0.909 30 H 0.065 0.935 31 H 0.110 0.890 32 H 0.174 0.826 33 H 0.094 0.906 34 H 0.107 0.893 35 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.959 6.082 6.725 15.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.159 4.159 3 C 0.194 3.806 4 H 0.034 0.966 5 C -0.594 4.594 6 H 0.078 0.922 7 C -0.178 4.178 8 N -0.547 5.547 9 Si 0.792 3.208 10 H -0.194 1.194 11 H -0.205 1.205 12 H -0.199 1.199 13 N -0.317 5.317 14 C 0.198 3.802 15 N -0.314 5.314 16 C 0.043 3.957 17 C -0.155 4.155 18 C -0.328 4.328 19 C 0.047 3.953 20 C -0.152 4.152 21 N -0.338 5.338 22 H 0.047 0.953 23 H 0.065 0.935 24 H 0.057 0.943 25 H 0.094 0.906 26 H 0.044 0.956 27 H 0.076 0.924 28 H 0.238 0.762 29 H 0.109 0.891 30 H 0.084 0.916 31 H 0.129 0.871 32 H 0.192 0.808 33 H 0.112 0.888 34 H 0.126 0.874 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -10.954 5.461 6.255 13.746 hybrid contribution 0.741 0.121 0.030 0.751 sum -10.214 5.582 6.285 13.228 Atomic orbital electron populations 1.21590 0.96541 0.98531 1.00231 1.21794 0.94285 0.99239 1.00609 1.18363 0.93000 0.88894 0.80348 0.96551 1.21541 0.91868 1.39333 1.06679 0.92233 1.25655 1.03085 0.94234 0.94873 1.70002 1.36934 1.38046 1.09711 0.85482 0.79359 0.78340 0.77643 1.19388 1.20500 1.19940 1.44853 1.11166 1.57769 1.17879 1.19613 0.87754 0.87564 0.85266 1.68060 1.05937 1.26300 1.31061 1.22158 0.90026 0.87371 0.96164 1.20819 0.97307 1.03629 0.93750 1.22390 1.04605 1.10866 0.94955 1.22133 0.86916 0.88844 0.97361 1.20815 1.03611 1.00428 0.90347 1.67794 1.22111 1.19001 1.24858 0.95326 0.93492 0.94278 0.90588 0.95643 0.92420 0.76221 0.89083 0.91611 0.87142 0.80822 0.88787 0.87411 0.90876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.99 8.44 71.98 0.61 -4.39 16 2 C -0.12 -6.10 5.45 30.60 0.17 -5.93 16 3 C 0.30 15.80 2.24 44.25 0.10 15.90 16 4 H 0.02 1.00 7.50 -2.39 -0.02 0.98 16 5 C -0.56 -30.93 8.73 25.60 0.22 -30.71 16 6 H 0.06 3.23 7.74 -2.91 -0.02 3.20 16 7 C 0.02 1.22 5.29 84.66 0.45 1.67 16 8 N -0.91 -51.95 11.29 21.45 0.24 -51.71 16 9 Si 0.97 43.28 29.54 68.60 2.03 45.31 16 10 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 11 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 12 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 13 N -0.68 -32.48 5.15 -334.01 -1.72 -34.20 16 14 C 0.55 24.56 6.97 261.49 1.82 26.38 16 15 N -0.59 -24.92 6.35 -186.04 -1.18 -26.10 16 16 C 0.19 6.24 6.82 42.58 0.29 6.53 16 17 C -0.10 -2.32 10.22 71.23 0.73 -1.59 16 18 C -0.30 -8.22 9.53 22.45 0.21 -8.00 16 19 C 0.19 5.88 6.82 42.58 0.29 6.17 16 20 C -0.09 -1.83 10.21 71.23 0.73 -1.10 16 21 N -0.61 -23.93 10.40 -186.05 -1.93 -25.86 16 22 H 0.03 1.27 5.61 -2.39 -0.01 1.26 16 23 H 0.05 2.15 7.66 -2.39 -0.02 2.13 16 24 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.08 4.23 5.95 -2.39 -0.01 4.22 16 26 H 0.02 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.27 14.40 8.31 -92.71 -0.77 13.63 16 28 H 0.40 18.23 8.66 -92.70 -0.80 17.42 16 29 H 0.09 1.94 8.14 -2.38 -0.02 1.92 16 30 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 31 H 0.11 1.76 8.10 -2.39 -0.02 1.74 16 32 H 0.17 3.09 8.06 -2.91 -0.02 3.06 16 33 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.11 1.37 8.09 -2.39 -0.02 1.35 16 35 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -66.32 289.30 3.33 -62.99 By element: Atomic # 1 Polarization: 24.36 SS G_CDS: 0.28 Total: 24.65 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: 5.62 Total: 4.93 kcal Atomic # 7 Polarization: -133.28 SS G_CDS: -4.59 Total: -137.87 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -66.32 3.33 -62.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309163392.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.906 kcal (2) G-P(sol) polarization free energy of solvation -66.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds