Wall clock time and date at job start Sun Mar 29 2020 21:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38389 * 120.00114 * 2 1 4 4 N 1.32128 * 119.99601 * 179.97438 * 3 2 1 5 5 C 1.32158 * 120.00142 * 359.97438 * 4 3 2 6 6 C 1.50698 * 120.00031 * 179.97438 * 5 4 3 7 7 N 1.46906 * 109.46791 * 274.99967 * 6 5 4 8 8 C 1.46903 * 111.00093 * 66.04658 * 7 6 5 9 9 C 1.46906 * 110.99440 * 189.99797 * 7 6 5 10 10 H 1.08996 * 109.46825 * 55.00566 * 9 7 6 11 11 C 1.52997 * 109.47302 * 294.99743 * 9 7 6 12 12 C 1.50708 * 109.46619 * 174.99918 * 9 7 6 13 13 H 1.07995 * 119.99755 * 0.02562 * 12 9 7 14 14 C 1.37873 * 119.99729 * 179.97438 * 12 9 7 15 15 N 1.31516 * 119.99909 * 0.02562 * 14 12 9 16 16 Si 1.86803 * 119.99980 * 179.97438 * 14 12 9 17 17 H 1.48500 * 109.46921 * 60.00420 * 16 14 12 18 18 H 1.48496 * 109.46933 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.46946 * 300.00103 * 16 14 12 20 20 C 1.38345 * 119.99907 * 0.25471 * 5 4 3 21 21 N 1.32128 * 120.00122 * 179.97438 * 2 1 3 22 22 H 1.08997 * 109.46659 * 90.00551 * 1 2 3 23 23 H 1.08998 * 109.47537 * 210.00306 * 1 2 3 24 24 H 1.09000 * 109.47027 * 330.00886 * 1 2 3 25 25 H 1.08000 * 120.00459 * 359.97438 * 3 2 1 26 26 H 1.08996 * 109.47110 * 154.99819 * 6 5 4 27 27 H 1.08997 * 109.47112 * 34.99420 * 6 5 4 28 28 H 1.09004 * 109.46799 * 183.95154 * 8 7 6 29 29 H 1.08995 * 109.46967 * 303.95395 * 8 7 6 30 30 H 1.09002 * 109.46933 * 63.95401 * 8 7 6 31 31 H 1.09002 * 109.47153 * 180.02562 * 11 9 7 32 32 H 1.09001 * 109.46832 * 60.00356 * 11 9 7 33 33 H 1.09004 * 109.47261 * 300.00337 * 11 9 7 34 34 H 0.97002 * 119.99804 * 180.02562 * 15 14 12 35 35 H 1.07999 * 119.99724 * 179.72979 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1990 1.1985 0.0000 4 7 3.5202 1.1984 0.0005 5 6 4.1810 0.0538 0.0015 6 6 5.6879 0.0537 0.0015 7 7 6.1776 0.1731 -1.3784 8 6 5.8281 1.4806 -1.9497 9 6 7.6264 -0.0602 -1.4448 10 1 7.8595 -1.0270 -0.9986 11 6 8.3567 1.0447 -0.6788 12 6 8.0711 -0.0514 -2.8848 13 1 7.3496 0.1118 -3.6717 14 6 9.3990 -0.2504 -3.1974 15 7 10.2776 -0.4486 -2.2390 16 14 9.9501 -0.2402 -4.9823 17 1 9.6318 1.0764 -5.5910 18 1 11.4147 -0.4759 -5.0494 19 1 9.2419 -1.3133 -5.7251 20 6 3.4891 -1.1443 -0.0033 21 7 2.1677 -1.1442 0.0005 22 1 -0.3632 -0.0001 -1.0277 23 1 -0.3634 -0.8899 0.5139 24 1 -0.3633 0.8901 0.5137 25 1 1.6591 2.1338 -0.0004 26 1 6.0512 -0.8773 0.4367 27 1 6.0513 0.8960 0.5901 28 1 6.1404 1.5162 -2.9934 29 1 4.7500 1.6278 -1.8876 30 1 6.3350 2.2680 -1.3918 31 1 9.4317 0.8717 -0.7285 32 1 8.0350 1.0382 0.3627 33 1 8.1235 2.0114 -1.1251 34 1 11.2120 -0.5882 -2.4590 35 1 4.0291 -2.0796 -0.0068 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330363730.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:36 Heat of formation + Delta-G solvation = 32.228339 kcal Electronic energy + Delta-G solvation = -16461.012804 eV Core-core repulsion = 13879.530691 eV Total energy + Delta-G solvation = -2581.482113 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.10976 -38.98769 -35.71817 -34.68598 -33.78031 -31.12183 -29.69439 -27.54099 -27.10319 -25.56464 -25.10904 -22.90022 -21.07244 -18.69410 -18.27114 -17.36847 -16.94063 -16.57807 -16.36945 -15.63195 -15.25992 -15.14457 -14.43234 -14.06913 -13.63285 -13.60890 -13.26328 -13.13024 -12.92530 -12.82907 -12.62672 -12.56497 -12.47828 -12.26892 -12.05420 -11.94162 -11.78413 -10.94758 -10.48458 -10.00572 -9.97447 -8.93082 -8.10171 -6.20739 -0.16575 0.18307 1.43911 1.44973 1.52616 2.43025 2.66304 3.09621 3.19251 3.27212 3.55425 3.58720 3.82978 4.14160 4.24038 4.53602 4.55580 4.63384 4.63778 4.78262 4.81447 4.83950 4.90613 4.92787 5.11804 5.14416 5.18498 5.51675 5.52547 5.70260 5.78037 6.14817 6.34560 6.44865 6.66429 6.87032 6.90755 7.47979 8.95736 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.046035 B = 0.005387 C = 0.005242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.083894 B = 5196.815611 C = 5340.000098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.066 3.934 3 C 0.048 3.952 4 N -0.454 5.454 5 C 0.076 3.924 6 C 0.107 3.893 7 N -0.537 5.537 8 C 0.049 3.951 9 C 0.216 3.784 10 H 0.017 0.983 11 C -0.159 4.159 12 C -0.517 4.517 13 H 0.054 0.946 14 C 0.015 3.985 15 N -0.918 5.918 16 Si 0.957 3.043 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.274 1.274 20 C 0.064 3.936 21 N -0.460 5.460 22 H 0.091 0.909 23 H 0.078 0.922 24 H 0.106 0.894 25 H 0.201 0.799 26 H 0.093 0.907 27 H 0.043 0.957 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.017 0.983 31 H 0.064 0.936 32 H 0.027 0.973 33 H 0.029 0.971 34 H 0.262 0.738 35 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.423 2.508 5.220 17.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.075 4.075 3 C -0.113 4.113 4 N -0.169 5.169 5 C -0.062 4.062 6 C -0.022 4.022 7 N -0.261 5.261 8 C -0.100 4.100 9 C 0.109 3.891 10 H 0.035 0.965 11 C -0.218 4.218 12 C -0.555 4.555 13 H 0.072 0.928 14 C -0.184 4.184 15 N -0.558 5.558 16 Si 0.783 3.217 17 H -0.199 1.199 18 H -0.209 1.209 19 H -0.199 1.199 20 C -0.095 4.095 21 N -0.176 5.176 22 H 0.110 0.890 23 H 0.097 0.903 24 H 0.125 0.875 25 H 0.217 0.783 26 H 0.111 0.889 27 H 0.061 0.939 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.036 0.964 31 H 0.083 0.917 32 H 0.046 0.954 33 H 0.048 0.952 34 H 0.071 0.929 35 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -16.427 2.088 4.968 17.288 hybrid contribution 1.293 0.535 -0.381 1.450 sum -15.134 2.623 4.587 16.030 Atomic orbital electron populations 1.20780 0.84863 1.05099 1.04423 1.22990 1.00275 0.89258 0.94981 1.24194 0.89890 1.00679 0.96521 1.68266 1.10039 1.29849 1.08756 1.22056 0.97437 0.90070 0.96674 1.20851 0.87813 1.02113 0.91429 1.62302 1.16393 1.30908 1.16508 1.22101 0.99247 0.89317 0.99293 1.19113 0.81289 0.93407 0.95258 0.96514 1.22210 1.03748 0.99169 0.96674 1.21309 0.93076 1.48635 0.92504 0.92814 1.25634 0.96692 0.94956 1.01131 1.69991 1.02704 1.49889 1.33220 0.85625 0.76957 0.78615 0.80492 1.19873 1.20869 1.19909 1.23678 0.90527 0.99612 0.95697 1.68368 1.08607 1.30505 1.10152 0.89008 0.90316 0.87522 0.78267 0.88855 0.93940 0.92885 0.92156 0.96446 0.91741 0.95398 0.95245 0.92904 0.80515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.23 10.19 71.24 0.73 -0.50 16 2 C 0.07 1.51 6.79 42.55 0.29 1.80 16 3 C 0.05 1.13 10.88 84.68 0.92 2.05 16 4 N -0.45 -14.05 8.93 -183.29 -1.64 -15.69 16 5 C 0.08 2.51 5.69 42.53 0.24 2.75 16 6 C 0.11 3.92 4.74 85.56 0.41 4.32 16 7 N -0.54 -23.42 4.73 -906.01 -4.29 -27.71 16 8 C 0.05 2.04 8.65 127.69 1.10 3.14 16 9 C 0.22 10.92 2.34 44.17 0.10 11.03 16 10 H 0.02 0.93 8.03 -2.39 -0.02 0.91 16 11 C -0.16 -7.72 8.28 71.98 0.60 -7.13 16 12 C -0.52 -28.50 7.94 25.60 0.20 -28.29 16 13 H 0.05 2.99 6.75 -2.91 -0.02 2.97 16 14 C 0.01 0.81 5.30 84.65 0.45 1.26 16 15 N -0.92 -52.38 11.32 21.45 0.24 -52.14 16 16 Si 0.96 43.80 29.54 68.60 2.03 45.83 16 17 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 18 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 19 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 20 C 0.06 1.92 10.86 84.67 0.92 2.84 16 21 N -0.46 -12.99 10.42 -183.29 -1.91 -14.90 16 22 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 23 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 24 H 0.11 0.78 8.09 -2.39 -0.02 0.76 16 25 H 0.20 2.96 8.06 -2.91 -0.02 2.94 16 26 H 0.09 3.20 7.91 -2.39 -0.02 3.19 16 27 H 0.04 1.60 6.94 -2.39 -0.02 1.58 16 28 H 0.05 2.35 6.53 -2.38 -0.02 2.34 16 29 H 0.06 2.32 6.13 -2.39 -0.01 2.31 16 30 H 0.02 0.72 6.28 -2.39 -0.01 0.71 16 31 H 0.06 3.47 6.07 -2.39 -0.01 3.46 16 32 H 0.03 1.20 6.75 -2.39 -0.02 1.18 16 33 H 0.03 1.40 6.39 -2.38 -0.02 1.38 16 34 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 35 H 0.18 4.79 8.06 -2.91 -0.02 4.76 16 Total: -1.00 -63.88 284.49 1.47 -62.41 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: 1.08 Total: 8.94 kcal Atomic # 6 Polarization: -12.70 SS G_CDS: 5.96 Total: -6.74 kcal Atomic # 7 Polarization: -102.84 SS G_CDS: -7.59 Total: -110.43 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -63.88 1.47 -62.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330363730.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.635 kcal (2) G-P(sol) polarization free energy of solvation -63.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds