Wall clock time and date at job start Sun Mar 29 2020 21:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38617 * 120.45339 * 2 1 4 4 C 1.38573 * 118.40385 * 180.02562 * 3 2 1 5 5 N 1.32346 * 119.10244 * 359.97438 * 4 3 2 6 6 C 1.31780 * 120.82340 * 0.02562 * 5 4 3 7 7 C 1.50700 * 119.12559 * 179.97438 * 6 5 4 8 8 N 1.46901 * 109.47327 * 89.99530 * 7 6 5 9 9 C 1.46894 * 111.00123 * 293.95332 * 8 7 6 10 10 C 1.46902 * 110.99644 * 169.99950 * 8 7 6 11 11 H 1.08996 * 109.47149 * 309.99327 * 10 8 7 12 12 C 1.52997 * 109.47094 * 70.00221 * 10 8 7 13 13 C 1.50706 * 109.46577 * 190.00011 * 10 8 7 14 14 H 1.07999 * 120.00196 * 359.97438 * 13 10 8 15 15 C 1.37879 * 119.99394 * 180.02562 * 13 10 8 16 16 N 1.31514 * 120.00338 * 0.02562 * 15 13 10 17 17 Si 1.86800 * 119.99424 * 180.02562 * 15 13 10 18 18 H 1.48501 * 109.47474 * 90.00322 * 17 15 13 19 19 H 1.48510 * 109.47116 * 210.00055 * 17 15 13 20 20 H 1.48498 * 109.47278 * 329.99887 * 17 15 13 21 21 N 1.31821 * 121.75131 * 0.26534 * 6 5 4 22 22 H 1.09000 * 109.47475 * 89.99459 * 1 2 3 23 23 H 1.09001 * 109.47536 * 209.99823 * 1 2 3 24 24 H 1.09006 * 109.47023 * 329.99789 * 1 2 3 25 25 H 1.08005 * 120.79893 * 0.02829 * 3 2 1 26 26 H 1.07993 * 120.44982 * 180.02562 * 4 3 2 27 27 H 1.08997 * 109.46811 * 329.99525 * 7 6 5 28 28 H 1.09000 * 109.46771 * 209.99667 * 7 6 5 29 29 H 1.09007 * 109.47149 * 296.05065 * 9 8 7 30 30 H 1.09002 * 109.47016 * 56.04488 * 9 8 7 31 31 H 1.08993 * 109.47669 * 176.04501 * 9 8 7 32 32 H 1.09002 * 109.47153 * 299.99508 * 12 10 8 33 33 H 1.09001 * 109.46832 * 179.97438 * 12 10 8 34 34 H 1.09004 * 109.47261 * 59.99681 * 12 10 8 35 35 H 0.96996 * 119.99730 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2096 1.1949 0.0000 4 6 3.5944 1.1454 -0.0005 5 7 4.1963 -0.0333 -0.0005 6 6 3.4956 -1.1493 -0.0005 7 6 4.2205 -2.4705 -0.0011 8 7 4.4566 -2.9001 1.3837 9 6 5.3876 -1.9911 2.0654 10 6 4.9448 -4.2849 1.4292 11 1 4.2942 -4.9194 0.8274 12 6 6.3692 -4.3421 0.8738 13 6 4.9417 -4.7719 2.8555 14 1 4.6107 -4.1179 3.6487 15 6 5.3625 -6.0520 3.1476 16 7 5.7670 -6.8478 2.1819 17 14 5.3580 -6.6558 4.9154 18 1 4.0474 -7.2836 5.2208 19 1 6.4406 -7.6556 5.0997 20 1 5.5827 -5.5085 5.8310 21 7 2.1774 -1.1408 -0.0057 22 1 -0.3634 0.0001 -1.0276 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5139 25 1 1.6901 2.1419 0.0005 26 1 4.1746 2.0562 -0.0001 27 1 5.1752 -2.3609 -0.5153 28 1 3.6147 -3.2170 -0.5148 29 1 6.3612 -2.0347 1.5770 30 1 5.0021 -0.9727 2.0168 31 1 5.4905 -2.2912 3.1082 32 1 6.3714 -3.9899 -0.1577 33 1 6.7315 -5.3696 0.9081 34 1 7.0197 -3.7076 1.4759 35 1 6.0633 -7.7482 2.3876 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330363792.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:48 Heat of formation + Delta-G solvation = 55.769758 kcal Electronic energy + Delta-G solvation = -16520.448010 eV Core-core repulsion = 13939.986730 eV Total energy + Delta-G solvation = -2580.461281 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.89630 -37.15151 -34.28379 -33.18933 -32.12110 -29.07074 -28.30214 -27.17977 -25.17601 -24.37625 -23.00108 -21.57783 -19.19784 -17.44851 -16.35101 -15.92801 -15.51862 -15.07128 -14.65349 -14.07406 -13.72643 -13.54481 -13.13074 -12.87963 -12.50914 -12.40564 -12.25762 -11.51170 -11.03180 -11.00434 -10.87007 -10.67006 -10.54151 -10.45689 -10.30569 -9.98803 -9.80042 -9.28614 -9.00727 -8.85739 -8.34053 -7.14588 -5.96848 -3.99952 1.05296 1.25805 3.34829 3.40697 3.44532 3.86057 4.12488 4.28669 4.46820 4.55194 5.03366 5.16000 5.24680 5.35068 5.37555 5.45583 5.54344 5.75627 5.87822 6.12220 6.16201 6.30834 6.50285 6.58759 6.74059 6.87594 6.95108 7.14442 7.23743 7.47456 7.74922 7.87229 8.14397 8.37473 8.41753 8.60395 9.05327 9.64465 11.10406 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.037298 B = 0.005826 C = 0.005545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.522036 B = 4805.214931 C = 5048.438769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.172 3.828 3 C -0.245 4.245 4 C 0.146 3.854 5 N -0.520 5.520 6 C 0.350 3.650 7 C 0.116 3.884 8 N -0.526 5.526 9 C 0.036 3.964 10 C 0.212 3.788 11 H 0.042 0.958 12 C -0.173 4.173 13 C -0.496 4.496 14 H 0.062 0.938 15 C 0.058 3.942 16 N -0.895 5.895 17 Si 0.897 3.103 18 H -0.281 1.281 19 H -0.288 1.288 20 H -0.275 1.275 21 N -0.503 5.503 22 H 0.082 0.918 23 H 0.084 0.916 24 H 0.077 0.923 25 H 0.141 0.859 26 H 0.163 0.837 27 H 0.054 0.946 28 H 0.092 0.908 29 H 0.024 0.976 30 H 0.042 0.958 31 H 0.069 0.931 32 H 0.008 0.992 33 H 0.089 0.911 34 H 0.033 0.967 35 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.336 14.477 -5.208 16.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.025 3.975 3 C -0.268 4.268 4 C -0.020 4.020 5 N -0.235 5.235 6 C 0.082 3.918 7 C -0.013 4.013 8 N -0.250 5.250 9 C -0.113 4.113 10 C 0.107 3.893 11 H 0.059 0.941 12 C -0.232 4.232 13 C -0.534 4.534 14 H 0.080 0.920 15 C -0.143 4.143 16 N -0.535 5.535 17 Si 0.726 3.274 18 H -0.207 1.207 19 H -0.214 1.214 20 H -0.200 1.200 21 N -0.218 5.218 22 H 0.100 0.900 23 H 0.103 0.897 24 H 0.095 0.905 25 H 0.159 0.841 26 H 0.180 0.820 27 H 0.072 0.928 28 H 0.111 0.889 29 H 0.042 0.958 30 H 0.061 0.939 31 H 0.088 0.912 32 H 0.027 0.973 33 H 0.108 0.892 34 H 0.052 0.948 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.240 13.417 -4.988 15.615 hybrid contribution 0.408 0.561 0.521 0.868 sum -5.832 13.978 -4.467 15.791 Atomic orbital electron populations 1.20761 0.88197 1.03975 1.03324 1.21779 0.97572 0.88429 0.89759 1.22645 0.96687 1.00201 1.07247 1.23171 0.92103 0.96268 0.90474 1.68345 1.41877 0.98805 1.14502 1.23409 0.86340 0.94459 0.87564 1.20807 0.97528 0.89056 0.93957 1.62360 1.47191 1.05084 1.10371 1.22248 0.94094 0.94937 0.99982 1.19353 0.90744 0.81860 0.97372 0.94061 1.22418 1.01176 1.04010 0.95622 1.21076 1.42230 0.97885 0.92240 0.92027 1.24913 0.95434 0.96665 0.97285 1.69884 1.44548 1.07659 1.31366 0.86508 0.77558 0.78466 0.84904 1.20708 1.21380 1.20016 1.68197 1.09958 1.29863 1.13753 0.89994 0.89748 0.90462 0.84135 0.81975 0.92803 0.88942 0.95793 0.93921 0.91190 0.97348 0.89217 0.94801 0.93028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.02 10.22 36.01 0.37 -0.65 16 2 C 0.17 2.35 6.82 -82.24 -0.56 1.79 16 3 C -0.25 -2.83 9.86 -39.32 -0.39 -3.22 16 4 C 0.15 1.87 11.30 -17.21 -0.19 1.68 16 5 N -0.52 -8.75 9.14 -10.73 -0.10 -8.85 16 6 C 0.35 6.46 6.42 -157.18 -1.01 5.46 16 7 C 0.12 2.34 4.97 -4.98 -0.02 2.31 16 8 N -0.53 -12.02 4.69 -237.73 -1.12 -13.14 16 9 C 0.04 0.77 8.59 60.06 0.52 1.28 16 10 C 0.21 5.47 2.31 -68.86 -0.16 5.31 16 11 H 0.04 1.15 7.93 -51.93 -0.41 0.74 16 12 C -0.17 -4.25 8.22 37.16 0.31 -3.94 16 13 C -0.50 -13.84 7.97 -34.44 -0.27 -14.11 16 14 H 0.06 1.74 7.10 -52.49 -0.37 1.37 16 15 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 16 N -0.89 -25.67 11.32 55.43 0.63 -25.04 16 17 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 N -0.50 -8.89 10.27 -6.98 -0.07 -8.96 16 22 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 23 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 24 H 0.08 0.55 8.10 -51.93 -0.42 0.13 16 25 H 0.14 1.08 8.06 -52.48 -0.42 0.66 16 26 H 0.16 1.46 8.06 -52.49 -0.42 1.03 16 27 H 0.05 1.06 7.06 -51.93 -0.37 0.70 16 28 H 0.09 1.85 7.93 -51.93 -0.41 1.43 16 29 H 0.02 0.50 6.21 -51.92 -0.32 0.18 16 30 H 0.04 0.86 6.33 -51.93 -0.33 0.53 16 31 H 0.07 1.57 6.86 -51.93 -0.36 1.22 16 32 H 0.01 0.17 6.91 -51.93 -0.36 -0.19 16 33 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 34 H 0.03 0.81 6.33 -51.93 -0.33 0.48 16 35 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 285.80 15.07 4.31 4.31 Total: -1.00 -31.04 285.80 -7.71 -38.75 By element: Atomic # 1 Polarization: 3.67 SS G_CDS: -4.82 Total: -1.15 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: -1.52 Total: -2.57 kcal Atomic # 7 Polarization: -55.33 SS G_CDS: -0.66 Total: -55.99 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -31.04 -7.71 -38.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330363792.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.520 kcal (2) G-P(sol) polarization free energy of solvation -31.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds