Wall clock time and date at job start Sun Mar 29 2020 21:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38617 * 120.45339 * 2 1 4 4 C 1.38573 * 118.40385 * 180.02562 * 3 2 1 5 5 N 1.32346 * 119.10244 * 359.97438 * 4 3 2 6 6 C 1.31780 * 120.82340 * 0.02562 * 5 4 3 7 7 C 1.50700 * 119.12559 * 179.97438 * 6 5 4 8 8 N 1.46901 * 109.47327 * 89.99530 * 7 6 5 9 9 C 1.46894 * 111.00123 * 293.95332 * 8 7 6 10 10 C 1.46902 * 110.99644 * 169.99950 * 8 7 6 11 11 H 1.08996 * 109.47149 * 309.99327 * 10 8 7 12 12 C 1.52997 * 109.47094 * 70.00221 * 10 8 7 13 13 C 1.50706 * 109.46577 * 190.00011 * 10 8 7 14 14 H 1.07999 * 120.00196 * 359.97438 * 13 10 8 15 15 C 1.37879 * 119.99394 * 180.02562 * 13 10 8 16 16 N 1.31514 * 120.00338 * 0.02562 * 15 13 10 17 17 Si 1.86800 * 119.99424 * 180.02562 * 15 13 10 18 18 H 1.48501 * 109.47474 * 90.00322 * 17 15 13 19 19 H 1.48510 * 109.47116 * 210.00055 * 17 15 13 20 20 H 1.48498 * 109.47278 * 329.99887 * 17 15 13 21 21 N 1.31821 * 121.75131 * 0.26534 * 6 5 4 22 22 H 1.09000 * 109.47475 * 89.99459 * 1 2 3 23 23 H 1.09001 * 109.47536 * 209.99823 * 1 2 3 24 24 H 1.09006 * 109.47023 * 329.99789 * 1 2 3 25 25 H 1.08005 * 120.79893 * 0.02829 * 3 2 1 26 26 H 1.07993 * 120.44982 * 180.02562 * 4 3 2 27 27 H 1.08997 * 109.46811 * 329.99525 * 7 6 5 28 28 H 1.09000 * 109.46771 * 209.99667 * 7 6 5 29 29 H 1.09007 * 109.47149 * 296.05065 * 9 8 7 30 30 H 1.09002 * 109.47016 * 56.04488 * 9 8 7 31 31 H 1.08993 * 109.47669 * 176.04501 * 9 8 7 32 32 H 1.09002 * 109.47153 * 299.99508 * 12 10 8 33 33 H 1.09001 * 109.46832 * 179.97438 * 12 10 8 34 34 H 1.09004 * 109.47261 * 59.99681 * 12 10 8 35 35 H 0.96996 * 119.99730 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2096 1.1949 0.0000 4 6 3.5944 1.1454 -0.0005 5 7 4.1963 -0.0333 -0.0005 6 6 3.4956 -1.1493 -0.0005 7 6 4.2205 -2.4705 -0.0011 8 7 4.4566 -2.9001 1.3837 9 6 5.3876 -1.9911 2.0654 10 6 4.9448 -4.2849 1.4292 11 1 4.2942 -4.9194 0.8274 12 6 6.3692 -4.3421 0.8738 13 6 4.9417 -4.7719 2.8555 14 1 4.6107 -4.1179 3.6487 15 6 5.3625 -6.0520 3.1476 16 7 5.7670 -6.8478 2.1819 17 14 5.3580 -6.6558 4.9154 18 1 4.0474 -7.2836 5.2208 19 1 6.4406 -7.6556 5.0997 20 1 5.5827 -5.5085 5.8310 21 7 2.1774 -1.1408 -0.0057 22 1 -0.3634 0.0001 -1.0276 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5139 25 1 1.6901 2.1419 0.0005 26 1 4.1746 2.0562 -0.0001 27 1 5.1752 -2.3609 -0.5153 28 1 3.6147 -3.2170 -0.5148 29 1 6.3612 -2.0347 1.5770 30 1 5.0021 -0.9727 2.0168 31 1 5.4905 -2.2912 3.1082 32 1 6.3714 -3.9899 -0.1577 33 1 6.7315 -5.3696 0.9081 34 1 7.0197 -3.7076 1.4759 35 1 6.0633 -7.7482 2.3876 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330363792.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:48 Heat of formation + Delta-G solvation = 34.516589 kcal Electronic energy + Delta-G solvation = -16521.369617 eV Core-core repulsion = 13939.986730 eV Total energy + Delta-G solvation = -2581.382887 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.03080 -38.94360 -35.44321 -34.88420 -33.61252 -30.80211 -29.39701 -28.74757 -27.28364 -25.98523 -24.13240 -22.95203 -21.07432 -18.59923 -18.27828 -17.35756 -16.96222 -16.44252 -16.13613 -15.56392 -15.27293 -15.16506 -14.45011 -14.21480 -13.89730 -13.72942 -13.42362 -13.11816 -12.88033 -12.86899 -12.60386 -12.55547 -12.32778 -12.06853 -11.97309 -11.56364 -11.45306 -10.95509 -10.48945 -10.32014 -10.14822 -8.95387 -8.10374 -6.21284 -0.05109 0.22592 1.43137 1.43786 1.54289 2.42520 2.68900 2.95936 3.18508 3.22222 3.57954 3.67278 4.08299 4.23769 4.36699 4.40669 4.54529 4.61134 4.68384 4.72212 4.76743 4.81505 4.88483 4.97737 5.10081 5.10376 5.15465 5.48633 5.56472 5.69010 5.76623 6.15986 6.18066 6.42762 6.63027 6.89420 7.23358 7.47195 8.95991 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.037298 B = 0.005826 C = 0.005545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.522036 B = 4805.214931 C = 5048.438769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.151 3.849 3 C -0.222 4.222 4 C 0.137 3.863 5 N -0.543 5.543 6 C 0.325 3.675 7 C 0.123 3.877 8 N -0.537 5.537 9 C 0.049 3.951 10 C 0.217 3.783 11 H 0.010 0.990 12 C -0.158 4.158 13 C -0.514 4.514 14 H 0.052 0.948 15 C 0.013 3.987 16 N -0.919 5.919 17 Si 0.961 3.039 18 H -0.277 1.277 19 H -0.281 1.281 20 H -0.270 1.270 21 N -0.538 5.538 22 H 0.098 0.902 23 H 0.068 0.932 24 H 0.110 0.890 25 H 0.190 0.810 26 H 0.203 0.797 27 H 0.053 0.947 28 H 0.080 0.920 29 H 0.024 0.976 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.025 0.975 33 H 0.065 0.935 34 H 0.035 0.965 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.170 16.939 -4.813 19.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.006 3.994 3 C -0.243 4.243 4 C -0.028 4.028 5 N -0.258 5.258 6 C 0.057 3.943 7 C -0.007 4.007 8 N -0.261 5.261 9 C -0.099 4.099 10 C 0.111 3.889 11 H 0.028 0.972 12 C -0.217 4.217 13 C -0.553 4.553 14 H 0.071 0.929 15 C -0.186 4.186 16 N -0.559 5.559 17 Si 0.787 3.213 18 H -0.203 1.203 19 H -0.206 1.206 20 H -0.195 1.195 21 N -0.255 5.255 22 H 0.117 0.883 23 H 0.087 0.913 24 H 0.128 0.872 25 H 0.207 0.793 26 H 0.220 0.780 27 H 0.071 0.929 28 H 0.098 0.902 29 H 0.043 0.957 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.044 0.956 33 H 0.084 0.916 34 H 0.054 0.946 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.089 15.909 -4.601 18.014 hybrid contribution 0.577 -0.070 0.329 0.668 sum -6.512 15.839 -4.271 17.650 Atomic orbital electron populations 1.20879 0.85526 1.04815 1.04629 1.22532 0.99399 0.88233 0.89261 1.23144 0.96228 1.01281 1.03679 1.23929 0.93423 0.96101 0.89329 1.68264 1.42577 0.99622 1.15376 1.22822 0.86860 0.94107 0.90502 1.20637 0.97612 0.90446 0.91999 1.62204 1.47375 1.03972 1.12595 1.22106 0.93875 0.95166 0.98753 1.19109 0.90649 0.83245 0.95936 0.97246 1.22202 1.00352 1.02465 0.96670 1.21292 1.42659 0.98317 0.93015 0.92946 1.25676 0.94935 0.96715 1.01265 1.70004 1.44812 1.07901 1.33194 0.85510 0.77692 0.77990 0.80121 1.20300 1.20649 1.19508 1.68111 1.09843 1.32458 1.15044 0.88322 0.91323 0.87167 0.79322 0.77985 0.92934 0.90151 0.95740 0.92526 0.92743 0.95597 0.91612 0.94632 0.92855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.68 10.22 71.24 0.73 -0.95 16 2 C 0.15 3.81 6.82 42.58 0.29 4.10 16 3 C -0.22 -4.22 9.86 22.44 0.22 -3.99 16 4 C 0.14 3.06 11.30 84.70 0.96 4.02 16 5 N -0.54 -17.55 9.14 -187.85 -1.72 -19.27 16 6 C 0.33 12.03 6.42 138.75 0.89 12.92 16 7 C 0.12 5.08 4.97 85.56 0.43 5.51 16 8 N -0.54 -25.23 4.69 -906.05 -4.25 -29.49 16 9 C 0.05 2.13 8.59 127.69 1.10 3.22 16 10 C 0.22 11.58 2.31 44.17 0.10 11.68 16 11 H 0.01 0.56 7.93 -2.39 -0.02 0.55 16 12 C -0.16 -7.92 8.22 71.98 0.59 -7.33 16 13 C -0.51 -29.40 7.97 25.60 0.20 -29.20 16 14 H 0.05 3.03 7.10 -2.91 -0.02 3.01 16 15 C 0.01 0.71 5.30 84.66 0.45 1.16 16 16 N -0.92 -53.68 11.32 21.45 0.24 -53.44 16 17 Si 0.96 44.75 29.54 68.60 2.03 46.77 16 18 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 19 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 20 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 21 N -0.54 -18.92 10.27 -176.01 -1.81 -20.73 16 22 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 23 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.11 1.08 8.10 -2.38 -0.02 1.07 16 25 H 0.19 1.71 8.06 -2.91 -0.02 1.68 16 26 H 0.20 2.71 8.06 -2.91 -0.02 2.68 16 27 H 0.05 2.13 7.06 -2.39 -0.02 2.11 16 28 H 0.08 3.41 7.93 -2.39 -0.02 3.39 16 29 H 0.02 1.03 6.21 -2.38 -0.01 1.02 16 30 H 0.06 2.26 6.33 -2.39 -0.02 2.24 16 31 H 0.05 2.48 6.86 -2.39 -0.02 2.46 16 32 H 0.03 1.16 6.91 -2.39 -0.02 1.14 16 33 H 0.07 3.63 6.07 -2.39 -0.01 3.61 16 34 H 0.03 1.72 6.33 -2.38 -0.02 1.71 16 35 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 Total: -1.00 -69.00 285.80 1.52 -67.48 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: 1.08 Total: 7.52 kcal Atomic # 6 Polarization: -4.81 SS G_CDS: 5.96 Total: 1.15 kcal Atomic # 7 Polarization: -115.38 SS G_CDS: -7.54 Total: -122.92 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.77 kcal Total: -69.00 1.52 -67.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330363792.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.996 kcal (2) G-P(sol) polarization free energy of solvation -69.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds