Wall clock time and date at job start Sun Mar 29 2020 21:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38624 * 120.44754 * 2 1 4 4 C 1.38574 * 118.39689 * 180.02562 * 3 2 1 5 5 N 1.32344 * 119.10789 * 0.02562 * 4 3 2 6 6 C 1.31783 * 120.82203 * 0.02562 * 5 4 3 7 7 C 1.50698 * 119.12478 * 179.97438 * 6 5 4 8 8 N 1.46906 * 109.46791 * 90.00080 * 7 6 5 9 9 C 1.46903 * 111.00093 * 66.04658 * 8 7 6 10 10 C 1.46906 * 110.99440 * 189.99797 * 8 7 6 11 11 H 1.08996 * 109.46825 * 55.00566 * 10 8 7 12 12 C 1.52997 * 109.47302 * 294.99743 * 10 8 7 13 13 C 1.50708 * 109.46619 * 174.99918 * 10 8 7 14 14 H 1.07995 * 119.99755 * 0.02562 * 13 10 8 15 15 C 1.37873 * 119.99729 * 179.97438 * 13 10 8 16 16 N 1.31516 * 119.99909 * 0.02562 * 15 13 10 17 17 Si 1.86803 * 119.99980 * 179.97438 * 15 13 10 18 18 H 1.48500 * 109.46755 * 90.00221 * 17 15 13 19 19 H 1.48498 * 109.46866 * 210.00208 * 17 15 13 20 20 H 1.48496 * 109.47178 * 330.00271 * 17 15 13 21 21 N 1.31820 * 121.75002 * 0.27225 * 6 5 4 22 22 H 1.09000 * 109.47353 * 90.00206 * 1 2 3 23 23 H 1.08997 * 109.47407 * 210.00122 * 1 2 3 24 24 H 1.08996 * 109.47155 * 330.00175 * 1 2 3 25 25 H 1.07991 * 120.79840 * 0.02562 * 3 2 1 26 26 H 1.08001 * 120.44328 * 180.02562 * 4 3 2 27 27 H 1.08996 * 109.47110 * 329.99931 * 7 6 5 28 28 H 1.08997 * 109.47112 * 209.99533 * 7 6 5 29 29 H 1.09004 * 109.46799 * 183.95154 * 9 8 7 30 30 H 1.08995 * 109.46967 * 303.95395 * 9 8 7 31 31 H 1.09002 * 109.46933 * 63.95401 * 9 8 7 32 32 H 1.09002 * 109.47153 * 180.02562 * 12 10 8 33 33 H 1.09001 * 109.46832 * 60.00356 * 12 10 8 34 34 H 1.09004 * 109.47261 * 300.00337 * 12 10 8 35 35 H 0.97002 * 119.99804 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2095 1.1951 0.0000 4 6 3.5943 1.1455 -0.0005 5 7 4.1963 -0.0331 -0.0016 6 6 3.4956 -1.1492 -0.0026 7 6 4.2206 -2.4704 -0.0043 8 7 4.4566 -2.9012 1.3802 9 6 3.1899 -3.1984 2.0623 10 6 5.3623 -4.0569 1.4247 11 1 6.2849 -3.8159 0.8967 12 6 4.6903 -5.2576 0.7557 13 6 5.6778 -4.3928 2.8596 14 1 5.2481 -3.8067 3.6584 15 6 6.5142 -5.4490 3.1524 16 7 7.0370 -6.1631 2.1796 17 14 6.9059 -5.8650 4.9309 18 1 5.9069 -6.8370 5.4434 19 1 8.2635 -6.4610 5.0124 20 1 6.8584 -4.6278 5.7507 21 7 2.1774 -1.1407 -0.0079 22 1 -0.3634 0.0000 -1.0276 23 1 -0.3634 -0.8899 0.5138 24 1 -0.3633 0.8900 0.5138 25 1 1.6900 2.1418 0.0004 26 1 4.1745 2.0564 -0.0001 27 1 5.1754 -2.3602 -0.5183 28 1 3.6149 -3.2165 -0.5187 29 1 3.3883 -3.4470 3.1049 30 1 2.5380 -2.3262 2.0144 31 1 2.7036 -4.0427 1.5736 32 1 5.3622 -6.1152 0.7891 33 1 4.4622 -5.0146 -0.2821 34 1 3.7677 -5.4985 1.2838 35 1 7.6252 -6.9064 2.3856 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330363793.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:51 Heat of formation + Delta-G solvation = 55.764078 kcal Electronic energy + Delta-G solvation = -16545.786173 eV Core-core repulsion = 13965.324646 eV Total energy + Delta-G solvation = -2580.461527 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.89959 -37.15048 -34.29514 -33.23135 -32.06890 -29.01076 -28.44226 -27.18081 -25.13478 -24.27859 -23.15788 -21.52620 -19.20640 -17.44921 -16.34424 -15.93713 -15.53152 -15.07730 -14.67292 -14.04993 -13.74679 -13.48204 -13.15487 -12.94006 -12.52473 -12.45607 -12.25204 -11.49259 -11.06067 -11.01704 -10.86308 -10.68774 -10.53537 -10.44170 -10.31703 -9.97297 -9.82180 -9.28877 -9.00605 -8.83071 -8.35431 -7.14448 -5.97434 -4.00734 1.05527 1.25384 3.33913 3.40266 3.44884 3.86166 4.09347 4.31657 4.46384 4.54450 5.02100 5.15844 5.24639 5.33622 5.35727 5.40336 5.56026 5.73172 5.83041 6.11574 6.16980 6.31534 6.51298 6.58645 6.74024 6.87396 6.96001 7.14247 7.23849 7.49471 7.75157 7.85874 8.12970 8.37448 8.41646 8.60278 9.04392 9.63753 11.09830 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.041775 B = 0.005613 C = 0.005599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.102873 B = 4986.794017 C = 4999.296891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.169 3.831 3 C -0.245 4.245 4 C 0.148 3.852 5 N -0.507 5.507 6 C 0.349 3.651 7 C 0.116 3.884 8 N -0.526 5.526 9 C 0.037 3.963 10 C 0.212 3.788 11 H 0.043 0.957 12 C -0.173 4.173 13 C -0.498 4.498 14 H 0.062 0.938 15 C 0.058 3.942 16 N -0.894 5.894 17 Si 0.897 3.103 18 H -0.282 1.282 19 H -0.287 1.287 20 H -0.274 1.274 21 N -0.516 5.516 22 H 0.081 0.919 23 H 0.081 0.919 24 H 0.077 0.923 25 H 0.141 0.859 26 H 0.164 0.836 27 H 0.092 0.908 28 H 0.055 0.945 29 H 0.071 0.929 30 H 0.041 0.959 31 H 0.022 0.978 32 H 0.089 0.911 33 H 0.008 0.992 34 H 0.032 0.968 35 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.819 12.034 -5.218 17.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.022 3.978 3 C -0.268 4.268 4 C -0.018 4.018 5 N -0.221 5.221 6 C 0.082 3.918 7 C -0.013 4.013 8 N -0.250 5.250 9 C -0.112 4.112 10 C 0.107 3.893 11 H 0.061 0.939 12 C -0.233 4.233 13 C -0.536 4.536 14 H 0.080 0.920 15 C -0.142 4.142 16 N -0.534 5.534 17 Si 0.725 3.275 18 H -0.208 1.208 19 H -0.213 1.213 20 H -0.199 1.199 21 N -0.232 5.232 22 H 0.100 0.900 23 H 0.100 0.900 24 H 0.096 0.904 25 H 0.159 0.841 26 H 0.181 0.819 27 H 0.111 0.889 28 H 0.072 0.928 29 H 0.089 0.911 30 H 0.060 0.940 31 H 0.041 0.959 32 H 0.108 0.892 33 H 0.027 0.973 34 H 0.051 0.949 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.969 11.389 -5.000 15.940 hybrid contribution -0.599 -0.016 0.524 0.796 sum -10.567 11.374 -4.476 16.157 Atomic orbital electron populations 1.20747 0.88266 1.03844 1.03310 1.21723 0.97437 0.88492 0.90104 1.22647 0.96753 1.00135 1.07235 1.23238 0.92020 0.96429 0.90141 1.68327 1.41665 0.98593 1.13513 1.23419 0.85939 0.94871 0.87557 1.20805 0.98582 0.87975 0.93985 1.62370 1.13224 1.39034 1.10406 1.22240 0.90722 0.98122 1.00102 1.19354 0.90087 0.82927 0.96968 0.93948 1.22420 1.00868 1.04357 0.95618 1.21089 1.27829 1.13283 0.91427 0.91990 1.24911 0.95868 0.96174 0.97295 1.69887 1.32496 1.19944 1.31051 0.86512 0.77493 0.78473 0.85017 1.20849 1.21283 1.19900 1.68213 1.10128 1.30118 1.14711 0.90021 0.89981 0.90436 0.84136 0.81864 0.88934 0.92753 0.91063 0.94018 0.95904 0.89217 0.97266 0.94929 0.93019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.95 10.22 36.00 0.37 -0.59 16 2 C 0.17 2.25 6.82 -82.24 -0.56 1.69 16 3 C -0.25 -2.82 9.86 -39.31 -0.39 -3.21 16 4 C 0.15 1.95 11.30 -17.21 -0.19 1.76 16 5 N -0.51 -8.90 10.33 -10.73 -0.11 -9.01 16 6 C 0.35 6.46 6.41 -157.18 -1.01 5.45 16 7 C 0.12 2.34 4.84 -4.97 -0.02 2.31 16 8 N -0.53 -12.03 4.73 -237.72 -1.13 -13.16 16 9 C 0.04 0.79 8.67 60.07 0.52 1.31 16 10 C 0.21 5.47 2.34 -68.86 -0.16 5.31 16 11 H 0.04 1.19 8.03 -51.93 -0.42 0.77 16 12 C -0.17 -4.25 8.28 37.16 0.31 -3.94 16 13 C -0.50 -13.86 7.94 -34.44 -0.27 -14.13 16 14 H 0.06 1.74 6.75 -52.49 -0.35 1.39 16 15 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 16 N -0.89 -25.62 11.32 55.43 0.63 -25.00 16 17 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 21 N -0.52 -8.74 9.10 -6.98 -0.06 -8.80 16 22 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.08 0.52 8.10 -51.93 -0.42 0.10 16 25 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 26 H 0.16 1.54 8.06 -52.49 -0.42 1.12 16 27 H 0.09 1.84 8.00 -51.93 -0.42 1.43 16 28 H 0.05 1.08 6.94 -51.93 -0.36 0.72 16 29 H 0.07 1.60 6.53 -51.93 -0.34 1.26 16 30 H 0.04 0.84 6.34 -51.93 -0.33 0.51 16 31 H 0.02 0.48 6.28 -51.93 -0.33 0.16 16 32 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 33 H 0.01 0.19 6.75 -51.93 -0.35 -0.16 16 34 H 0.03 0.78 6.39 -51.93 -0.33 0.45 16 35 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 285.21 15.07 4.30 4.30 Total: -1.00 -31.01 285.21 -7.69 -38.70 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: -4.79 Total: -1.13 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: -1.51 Total: -2.51 kcal Atomic # 7 Polarization: -55.29 SS G_CDS: -0.67 Total: -55.96 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -31.01 -7.69 -38.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330363793.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.465 kcal (2) G-P(sol) polarization free energy of solvation -31.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds