Wall clock time and date at job start Sun Mar 29 2020 21:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38624 * 120.44754 * 2 1 4 4 C 1.38574 * 118.39689 * 180.02562 * 3 2 1 5 5 N 1.32344 * 119.10789 * 0.02562 * 4 3 2 6 6 C 1.31783 * 120.82203 * 0.02562 * 5 4 3 7 7 C 1.50698 * 119.12478 * 179.97438 * 6 5 4 8 8 N 1.46906 * 109.46791 * 90.00080 * 7 6 5 9 9 C 1.46903 * 111.00093 * 66.04658 * 8 7 6 10 10 C 1.46906 * 110.99440 * 189.99797 * 8 7 6 11 11 H 1.08996 * 109.46825 * 55.00566 * 10 8 7 12 12 C 1.52997 * 109.47302 * 294.99743 * 10 8 7 13 13 C 1.50708 * 109.46619 * 174.99918 * 10 8 7 14 14 H 1.07995 * 119.99755 * 0.02562 * 13 10 8 15 15 C 1.37873 * 119.99729 * 179.97438 * 13 10 8 16 16 N 1.31516 * 119.99909 * 0.02562 * 15 13 10 17 17 Si 1.86803 * 119.99980 * 179.97438 * 15 13 10 18 18 H 1.48500 * 109.46755 * 90.00221 * 17 15 13 19 19 H 1.48498 * 109.46866 * 210.00208 * 17 15 13 20 20 H 1.48496 * 109.47178 * 330.00271 * 17 15 13 21 21 N 1.31820 * 121.75002 * 0.27225 * 6 5 4 22 22 H 1.09000 * 109.47353 * 90.00206 * 1 2 3 23 23 H 1.08997 * 109.47407 * 210.00122 * 1 2 3 24 24 H 1.08996 * 109.47155 * 330.00175 * 1 2 3 25 25 H 1.07991 * 120.79840 * 0.02562 * 3 2 1 26 26 H 1.08001 * 120.44328 * 180.02562 * 4 3 2 27 27 H 1.08996 * 109.47110 * 329.99931 * 7 6 5 28 28 H 1.08997 * 109.47112 * 209.99533 * 7 6 5 29 29 H 1.09004 * 109.46799 * 183.95154 * 9 8 7 30 30 H 1.08995 * 109.46967 * 303.95395 * 9 8 7 31 31 H 1.09002 * 109.46933 * 63.95401 * 9 8 7 32 32 H 1.09002 * 109.47153 * 180.02562 * 12 10 8 33 33 H 1.09001 * 109.46832 * 60.00356 * 12 10 8 34 34 H 1.09004 * 109.47261 * 300.00337 * 12 10 8 35 35 H 0.97002 * 119.99804 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2095 1.1951 0.0000 4 6 3.5943 1.1455 -0.0005 5 7 4.1963 -0.0331 -0.0016 6 6 3.4956 -1.1492 -0.0026 7 6 4.2206 -2.4704 -0.0043 8 7 4.4566 -2.9012 1.3802 9 6 3.1899 -3.1984 2.0623 10 6 5.3623 -4.0569 1.4247 11 1 6.2849 -3.8159 0.8967 12 6 4.6903 -5.2576 0.7557 13 6 5.6778 -4.3928 2.8596 14 1 5.2481 -3.8067 3.6584 15 6 6.5142 -5.4490 3.1524 16 7 7.0370 -6.1631 2.1796 17 14 6.9059 -5.8650 4.9309 18 1 5.9069 -6.8370 5.4434 19 1 8.2635 -6.4610 5.0124 20 1 6.8584 -4.6278 5.7507 21 7 2.1774 -1.1407 -0.0079 22 1 -0.3634 0.0000 -1.0276 23 1 -0.3634 -0.8899 0.5138 24 1 -0.3633 0.8900 0.5138 25 1 1.6900 2.1418 0.0004 26 1 4.1745 2.0564 -0.0001 27 1 5.1754 -2.3602 -0.5183 28 1 3.6149 -3.2165 -0.5187 29 1 3.3883 -3.4470 3.1049 30 1 2.5380 -2.3262 2.0144 31 1 2.7036 -4.0427 1.5736 32 1 5.3622 -6.1152 0.7891 33 1 4.4622 -5.0146 -0.2821 34 1 3.7677 -5.4985 1.2838 35 1 7.6252 -6.9064 2.3856 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330363793.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:51 Heat of formation + Delta-G solvation = 34.498792 kcal Electronic energy + Delta-G solvation = -16546.708305 eV Core-core repulsion = 13965.324646 eV Total energy + Delta-G solvation = -2581.383659 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.03444 -38.94723 -35.40385 -34.96340 -33.56490 -30.73174 -29.59484 -28.67767 -27.22873 -25.93672 -24.24906 -22.90117 -21.07355 -18.59568 -18.27968 -17.37452 -16.96003 -16.44773 -16.14217 -15.55563 -15.34480 -15.06396 -14.45218 -14.19704 -13.92638 -13.75926 -13.38787 -13.11954 -12.91156 -12.86603 -12.63721 -12.57509 -12.30848 -12.05394 -11.97163 -11.54509 -11.45967 -10.94090 -10.49611 -10.32021 -10.14932 -8.95719 -8.10563 -6.21539 -0.04927 0.21906 1.42985 1.43855 1.54798 2.42550 2.68775 2.94896 3.18571 3.23941 3.55974 3.67316 4.09713 4.24154 4.35775 4.41474 4.54417 4.61700 4.67224 4.73415 4.76453 4.79014 4.89441 4.97287 5.10977 5.11767 5.13327 5.50460 5.56113 5.69090 5.76275 6.13849 6.18050 6.42066 6.63338 6.89384 7.23152 7.46989 8.95932 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.041775 B = 0.005613 C = 0.005599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.102873 B = 4986.794017 C = 4999.296891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.152 3.848 3 C -0.222 4.222 4 C 0.135 3.865 5 N -0.541 5.541 6 C 0.325 3.675 7 C 0.123 3.877 8 N -0.537 5.537 9 C 0.051 3.949 10 C 0.217 3.783 11 H 0.011 0.989 12 C -0.158 4.158 13 C -0.516 4.516 14 H 0.054 0.946 15 C 0.013 3.987 16 N -0.919 5.919 17 Si 0.961 3.039 18 H -0.274 1.274 19 H -0.282 1.282 20 H -0.272 1.272 21 N -0.539 5.539 22 H 0.098 0.902 23 H 0.071 0.929 24 H 0.109 0.891 25 H 0.189 0.811 26 H 0.200 0.800 27 H 0.082 0.918 28 H 0.052 0.948 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.021 0.979 32 H 0.065 0.935 33 H 0.026 0.974 34 H 0.033 0.967 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.485 13.996 -4.813 19.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.007 3.993 3 C -0.243 4.243 4 C -0.029 4.029 5 N -0.257 5.257 6 C 0.057 3.943 7 C -0.007 4.007 8 N -0.261 5.261 9 C -0.098 4.098 10 C 0.110 3.890 11 H 0.028 0.972 12 C -0.217 4.217 13 C -0.554 4.554 14 H 0.072 0.928 15 C -0.186 4.186 16 N -0.559 5.559 17 Si 0.787 3.213 18 H -0.200 1.200 19 H -0.207 1.207 20 H -0.197 1.197 21 N -0.256 5.256 22 H 0.116 0.884 23 H 0.090 0.910 24 H 0.127 0.873 25 H 0.207 0.793 26 H 0.217 0.783 27 H 0.100 0.900 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.040 0.960 32 H 0.084 0.916 33 H 0.045 0.955 34 H 0.052 0.948 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.657 13.378 -4.603 18.331 hybrid contribution -0.152 -0.476 0.330 0.599 sum -11.809 12.901 -4.273 18.004 Atomic orbital electron populations 1.20872 0.85256 1.04924 1.04655 1.22523 0.99385 0.88171 0.89258 1.23146 0.96045 1.01465 1.03669 1.23929 0.93545 0.96073 0.89367 1.68230 1.42908 0.99761 1.14790 1.22833 0.86708 0.94276 0.90494 1.20638 0.98453 0.89580 0.92022 1.62215 1.13641 1.37638 1.12626 1.22088 0.90185 0.98581 0.98901 1.19109 0.89751 0.84313 0.95781 0.97158 1.22203 1.00005 1.02858 0.96653 1.21310 1.28332 1.13593 0.92208 0.92789 1.25677 0.95593 0.95963 1.01327 1.70009 1.32754 1.20204 1.32906 0.85506 0.77459 0.78228 0.80114 1.20007 1.20745 1.19694 1.68143 1.09433 1.32369 1.15619 0.88375 0.90979 0.87269 0.79340 0.78338 0.90000 0.92998 0.92543 0.92707 0.96004 0.91596 0.95489 0.94840 0.92858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.47 10.22 71.24 0.73 -0.75 16 2 C 0.15 3.64 6.82 42.58 0.29 3.93 16 3 C -0.22 -4.23 9.86 22.44 0.22 -4.01 16 4 C 0.14 3.22 11.30 84.70 0.96 4.18 16 5 N -0.54 -18.74 10.33 -187.85 -1.94 -20.68 16 6 C 0.32 12.03 6.41 138.75 0.89 12.92 16 7 C 0.12 5.08 4.84 85.56 0.41 5.50 16 8 N -0.54 -25.23 4.73 -906.01 -4.29 -29.52 16 9 C 0.05 2.20 8.67 127.69 1.11 3.31 16 10 C 0.22 11.57 2.34 44.17 0.10 11.67 16 11 H 0.01 0.62 8.03 -2.39 -0.02 0.60 16 12 C -0.16 -7.94 8.28 71.98 0.60 -7.34 16 13 C -0.52 -29.38 7.94 25.60 0.20 -29.18 16 14 H 0.05 3.10 6.75 -2.91 -0.02 3.08 16 15 C 0.01 0.73 5.30 84.65 0.45 1.18 16 16 N -0.92 -53.59 11.32 21.45 0.24 -53.35 16 17 Si 0.96 44.63 29.54 68.60 2.03 46.66 16 18 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 19 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 20 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 21 N -0.54 -17.76 9.10 -176.01 -1.60 -19.37 16 22 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 23 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 24 H 0.11 0.92 8.10 -2.39 -0.02 0.90 16 25 H 0.19 1.72 8.06 -2.92 -0.02 1.70 16 26 H 0.20 3.06 8.06 -2.91 -0.02 3.04 16 27 H 0.08 3.45 8.00 -2.39 -0.02 3.43 16 28 H 0.05 2.11 6.94 -2.39 -0.02 2.10 16 29 H 0.06 2.57 6.53 -2.38 -0.02 2.56 16 30 H 0.05 2.21 6.34 -2.39 -0.02 2.19 16 31 H 0.02 0.93 6.28 -2.39 -0.01 0.91 16 32 H 0.07 3.64 6.07 -2.39 -0.01 3.62 16 33 H 0.03 1.21 6.75 -2.39 -0.02 1.19 16 34 H 0.03 1.62 6.39 -2.38 -0.02 1.61 16 35 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 Total: -1.00 -68.76 285.21 1.48 -67.28 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: 1.08 Total: 7.56 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: 5.96 Total: 1.41 kcal Atomic # 7 Polarization: -115.32 SS G_CDS: -7.59 Total: -122.91 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -68.76 1.48 -67.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330363793.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.781 kcal (2) G-P(sol) polarization free energy of solvation -68.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds