Wall clock time and date at job start Sun Mar 29 2020 21:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86802 * 119.99857 * 2 1 4 4 H 1.48501 * 109.47299 * 270.00300 * 3 2 1 5 5 H 1.48502 * 109.47166 * 29.99978 * 3 2 1 6 6 H 1.48501 * 109.46990 * 149.99655 * 3 2 1 7 7 C 1.37873 * 120.00105 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00040 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99891 * 180.02562 * 7 2 1 10 10 N 1.46896 * 109.46978 * 179.97438 * 9 7 2 11 11 C 1.46851 * 110.99941 * 65.78976 * 10 9 7 12 12 C 1.53037 * 109.52083 * 185.83705 * 11 10 9 13 13 C 1.53116 * 109.28119 * 300.81688 * 12 11 10 14 14 C 1.53119 * 109.15608 * 57.65841 * 13 12 11 15 15 H 1.09000 * 109.53904 * 62.30878 * 14 13 12 16 16 N 1.46506 * 109.50182 * 182.40100 * 14 13 12 17 17 C 1.34947 * 126.03702 * 34.80594 * 16 14 13 18 18 C 1.35307 * 107.74824 * 179.97438 * 17 16 14 19 19 C 1.39874 * 107.91884 * 359.97438 * 18 17 16 20 20 N 1.30836 * 108.20052 * 359.73989 * 19 18 17 21 21 C 1.46849 * 110.99995 * 189.99702 * 10 9 7 22 22 H 0.96997 * 119.99997 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.47215 * 59.99844 * 9 7 2 24 24 H 1.08998 * 109.46770 * 299.99897 * 9 7 2 25 25 H 1.09000 * 109.46264 * 305.85402 * 11 10 9 26 26 H 1.09000 * 109.46171 * 65.83561 * 11 10 9 27 27 H 1.09003 * 109.50471 * 60.76490 * 12 11 10 28 28 H 1.09006 * 109.50196 * 180.87673 * 12 11 10 29 29 H 1.08998 * 109.52648 * 297.75141 * 13 12 11 30 30 H 1.09004 * 109.52367 * 177.55814 * 13 12 11 31 31 H 1.08007 * 126.12499 * 359.97438 * 17 16 14 32 32 H 1.07999 * 126.04459 * 180.02562 * 18 17 16 33 33 H 1.08001 * 125.89534 * 180.02562 * 19 18 17 34 34 H 1.09000 * 109.45769 * 54.14631 * 21 10 9 35 35 H 1.09001 * 109.45379 * 294.17424 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5116 -1.1939 0.0000 10 7 4.0013 -2.5789 -0.0001 11 6 3.6471 -3.2622 -1.2508 12 6 4.0428 -4.7375 -1.1572 13 6 5.5496 -4.8419 -0.9058 14 6 5.8989 -4.0814 0.3764 15 1 5.3892 -4.5410 1.2232 16 7 7.3471 -4.1280 0.5935 17 6 8.2948 -4.1108 -0.3670 18 6 9.5013 -4.1675 0.2429 19 6 9.2835 -4.2206 1.6236 20 7 7.9926 -4.1910 1.8351 21 6 5.4495 -2.6250 0.2385 22 1 -0.4850 0.8400 -0.0004 23 1 3.8746 -0.6807 0.8905 24 1 3.8752 -0.6795 -0.8895 25 1 2.5725 -3.1841 -1.4155 26 1 4.1768 -2.7963 -2.0817 27 1 3.5032 -5.2076 -0.3350 28 1 3.7940 -5.2410 -2.0915 29 1 6.0902 -4.4067 -1.7463 30 1 5.8288 -5.8898 -0.7953 31 1 8.1214 -4.0607 -1.4319 32 1 10.4626 -4.1703 -0.2492 33 1 10.0488 -4.2721 2.3839 34 1 5.6839 -2.0842 1.1553 35 1 5.9704 -2.1620 -0.5996 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334228264.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:25 Heat of formation + Delta-G solvation = 81.818726 kcal Electronic energy + Delta-G solvation = -16611.064368 eV Core-core repulsion = 14031.732655 eV Total energy + Delta-G solvation = -2579.331713 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.17800 -38.48083 -34.32235 -32.46331 -31.79130 -30.06878 -28.82001 -27.57946 -24.02372 -23.17982 -21.70377 -20.95800 -20.25629 -19.16695 -17.23649 -16.85568 -15.38795 -14.89912 -14.62555 -14.42951 -14.21535 -13.74860 -13.50519 -13.17815 -12.93721 -12.69145 -12.41951 -12.27554 -11.69162 -11.31324 -10.91946 -10.83318 -10.73030 -10.55522 -10.40787 -10.12727 -9.89466 -9.37212 -9.29267 -8.63053 -8.53338 -7.55437 -6.10648 -4.08716 1.97643 2.54308 2.89346 3.24326 3.32768 3.34903 4.37295 4.50787 4.59579 4.79513 4.92759 5.01391 5.08240 5.22090 5.34324 5.42045 5.57261 5.62564 5.74234 5.86845 5.92647 5.96859 6.01555 6.05787 6.13215 6.47614 6.55415 6.70250 6.76834 6.88293 7.10674 7.50824 7.75859 7.79612 7.92687 8.57191 8.96851 9.50610 11.02199 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.035005 B = 0.006098 C = 0.005498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.696480 B = 4590.811176 C = 5091.290784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.070 3.930 3 Si 0.874 3.126 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.268 1.268 7 C -0.511 4.511 8 H 0.082 0.918 9 C 0.164 3.836 10 N -0.522 5.522 11 C 0.057 3.943 12 C -0.113 4.113 13 C -0.125 4.125 14 C 0.163 3.837 15 H 0.111 0.889 16 N -0.358 5.358 17 C 0.055 3.945 18 C -0.283 4.283 19 C 0.036 3.964 20 N -0.295 5.295 21 C 0.048 3.952 22 H 0.264 0.736 23 H 0.030 0.970 24 H -0.015 1.015 25 H 0.096 0.904 26 H 0.023 0.977 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.168 0.832 32 H 0.143 0.857 33 H 0.179 0.821 34 H 0.076 0.924 35 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.533 -8.746 -2.922 18.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.132 4.132 3 Si 0.701 3.299 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.192 1.192 7 C -0.550 4.550 8 H 0.100 0.900 9 C 0.038 3.962 10 N -0.247 5.247 11 C -0.071 4.071 12 C -0.151 4.151 13 C -0.164 4.164 14 C 0.061 3.939 15 H 0.129 0.871 16 N -0.140 5.140 17 C -0.092 4.092 18 C -0.313 4.313 19 C -0.150 4.150 20 N -0.116 5.116 21 C -0.082 4.082 22 H 0.074 0.926 23 H 0.048 0.952 24 H 0.003 0.997 25 H 0.115 0.885 26 H 0.041 0.959 27 H 0.094 0.906 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.186 0.814 32 H 0.161 0.839 33 H 0.196 0.804 34 H 0.095 0.905 35 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 14.053 -8.862 -1.663 16.697 hybrid contribution 1.562 1.499 -1.318 2.534 sum 15.615 -7.363 -2.981 17.519 Atomic orbital electron populations 1.69885 1.06088 1.26934 1.50777 1.24877 0.94731 0.98811 0.94736 0.86884 0.80402 0.84110 0.78490 1.20315 1.21012 1.19235 1.20990 0.88443 0.94829 1.50688 0.89954 1.20182 0.97257 0.83448 0.95264 1.61836 1.08818 1.19485 1.34564 1.22091 1.02907 0.92067 0.90013 1.21601 0.93311 0.97887 1.02328 1.21963 0.98580 0.99997 0.95846 1.21414 0.74232 0.97981 1.00287 0.87119 1.48995 1.06471 1.54936 1.03576 1.22491 0.89044 1.01545 0.96135 1.21452 0.98006 1.17940 0.93876 1.23843 0.93770 1.00723 0.96620 1.77395 1.07237 1.23689 1.03289 1.22373 0.90941 0.93748 1.01120 0.92569 0.95221 0.99712 0.88547 0.95923 0.90602 0.91013 0.91581 0.91245 0.81434 0.83906 0.80357 0.90548 0.95456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.13 13.96 55.43 0.77 -26.35 16 2 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 3 Si 0.87 21.37 27.47 -169.99 -4.67 16.70 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 7 C -0.51 -14.22 8.98 -34.44 -0.31 -14.53 16 8 H 0.08 2.47 7.36 -52.49 -0.39 2.08 16 9 C 0.16 3.94 3.79 -4.98 -0.02 3.92 16 10 N -0.52 -10.58 4.65 -236.11 -1.10 -11.68 16 11 C 0.06 1.02 5.30 -3.83 -0.02 1.00 16 12 C -0.11 -1.53 6.09 -26.65 -0.16 -1.69 16 13 C -0.13 -1.54 4.97 -26.61 -0.13 -1.67 16 14 C 0.16 2.40 3.37 -67.85 -0.23 2.18 16 15 H 0.11 1.75 8.14 -51.93 -0.42 1.33 16 16 N -0.36 -5.22 3.53 -54.78 -0.19 -5.41 16 17 C 0.06 0.67 10.59 -17.23 -0.18 0.49 16 18 C -0.28 -3.26 10.80 -40.01 -0.43 -3.69 16 19 C 0.04 0.45 12.03 -17.36 -0.21 0.25 16 20 N -0.30 -4.61 12.58 30.63 0.39 -4.23 16 21 C 0.05 0.84 5.07 -3.83 -0.02 0.82 16 22 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 23 H 0.03 0.73 7.05 -51.93 -0.37 0.37 16 24 H -0.01 -0.35 7.55 -51.93 -0.39 -0.75 16 25 H 0.10 1.93 6.70 -51.93 -0.35 1.59 16 26 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.07 0.74 7.04 -51.93 -0.37 0.38 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.17 1.59 7.20 -52.48 -0.38 1.21 16 32 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 33 H 0.18 1.62 8.06 -52.49 -0.42 1.20 16 34 H 0.08 1.43 8.01 -51.93 -0.42 1.01 16 35 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 283.58 15.07 4.27 4.27 Total: -1.00 -31.11 283.58 -7.54 -38.65 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: -5.20 Total: -0.93 kcal Atomic # 6 Polarization: -9.21 SS G_CDS: -1.81 Total: -11.02 kcal Atomic # 7 Polarization: -47.53 SS G_CDS: -0.13 Total: -47.67 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.67 Total: 16.70 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -31.11 -7.54 -38.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334228264.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.468 kcal (2) G-P(sol) polarization free energy of solvation -31.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds