Wall clock time and date at job start Sun Mar 29 2020 21:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86802 * 119.99857 * 2 1 4 4 H 1.48501 * 109.47299 * 270.00300 * 3 2 1 5 5 H 1.48502 * 109.47166 * 29.99978 * 3 2 1 6 6 H 1.48501 * 109.46990 * 149.99655 * 3 2 1 7 7 C 1.37873 * 120.00105 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00040 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99891 * 180.02562 * 7 2 1 10 10 N 1.46896 * 109.46978 * 179.97438 * 9 7 2 11 11 C 1.46851 * 110.99941 * 65.78976 * 10 9 7 12 12 C 1.53037 * 109.52083 * 185.83705 * 11 10 9 13 13 C 1.53116 * 109.28119 * 300.81688 * 12 11 10 14 14 C 1.53119 * 109.15608 * 57.65841 * 13 12 11 15 15 H 1.09000 * 109.53904 * 62.30878 * 14 13 12 16 16 N 1.46506 * 109.50182 * 182.40100 * 14 13 12 17 17 C 1.34947 * 126.03702 * 34.80594 * 16 14 13 18 18 C 1.35307 * 107.74824 * 179.97438 * 17 16 14 19 19 C 1.39874 * 107.91884 * 359.97438 * 18 17 16 20 20 N 1.30836 * 108.20052 * 359.73989 * 19 18 17 21 21 C 1.46849 * 110.99995 * 189.99702 * 10 9 7 22 22 H 0.96997 * 119.99997 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.47215 * 59.99844 * 9 7 2 24 24 H 1.08998 * 109.46770 * 299.99897 * 9 7 2 25 25 H 1.09000 * 109.46264 * 305.85402 * 11 10 9 26 26 H 1.09000 * 109.46171 * 65.83561 * 11 10 9 27 27 H 1.09003 * 109.50471 * 60.76490 * 12 11 10 28 28 H 1.09006 * 109.50196 * 180.87673 * 12 11 10 29 29 H 1.08998 * 109.52648 * 297.75141 * 13 12 11 30 30 H 1.09004 * 109.52367 * 177.55814 * 13 12 11 31 31 H 1.08007 * 126.12499 * 359.97438 * 17 16 14 32 32 H 1.07999 * 126.04459 * 180.02562 * 18 17 16 33 33 H 1.08001 * 125.89534 * 180.02562 * 19 18 17 34 34 H 1.09000 * 109.45769 * 54.14631 * 21 10 9 35 35 H 1.09001 * 109.45379 * 294.17424 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5116 -1.1939 0.0000 10 7 4.0013 -2.5789 -0.0001 11 6 3.6471 -3.2622 -1.2508 12 6 4.0428 -4.7375 -1.1572 13 6 5.5496 -4.8419 -0.9058 14 6 5.8989 -4.0814 0.3764 15 1 5.3892 -4.5410 1.2232 16 7 7.3471 -4.1280 0.5935 17 6 8.2948 -4.1108 -0.3670 18 6 9.5013 -4.1675 0.2429 19 6 9.2835 -4.2206 1.6236 20 7 7.9926 -4.1910 1.8351 21 6 5.4495 -2.6250 0.2385 22 1 -0.4850 0.8400 -0.0004 23 1 3.8746 -0.6807 0.8905 24 1 3.8752 -0.6795 -0.8895 25 1 2.5725 -3.1841 -1.4155 26 1 4.1768 -2.7963 -2.0817 27 1 3.5032 -5.2076 -0.3350 28 1 3.7940 -5.2410 -2.0915 29 1 6.0902 -4.4067 -1.7463 30 1 5.8288 -5.8898 -0.7953 31 1 8.1214 -4.0607 -1.4319 32 1 10.4626 -4.1703 -0.2492 33 1 10.0488 -4.2721 2.3839 34 1 5.6839 -2.0842 1.1553 35 1 5.9704 -2.1620 -0.5996 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334228264.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:25 Heat of formation + Delta-G solvation = 60.390858 kcal Electronic energy + Delta-G solvation = -16611.993550 eV Core-core repulsion = 14031.732655 eV Total energy + Delta-G solvation = -2580.260895 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.16512 -39.83528 -35.86217 -34.32716 -33.11249 -31.06044 -30.19298 -29.22126 -25.54379 -24.43720 -23.18135 -22.04196 -21.55624 -20.31719 -18.99173 -18.26936 -16.79986 -16.25431 -16.22889 -15.77016 -15.47701 -15.07104 -14.81863 -14.60940 -14.19669 -14.06496 -13.83806 -13.44177 -13.29984 -12.76084 -12.60409 -12.51312 -11.97098 -11.90463 -11.77598 -11.59093 -11.44699 -11.35045 -10.82123 -10.37416 -9.50204 -9.15839 -8.31563 -6.35073 1.01873 1.30520 1.33377 1.43268 1.52368 2.00617 2.30699 3.00451 3.14626 3.45047 3.69636 3.92537 3.96319 4.10746 4.15710 4.18762 4.47250 4.53763 4.56725 4.64757 4.74938 4.82860 4.86086 4.94621 4.99046 5.04170 5.18997 5.20495 5.34868 5.48743 5.79985 5.89992 6.14977 6.30802 6.54325 6.70923 6.84076 7.28488 8.84670 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.035005 B = 0.006098 C = 0.005498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.696480 B = 4590.811176 C = 5091.290784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.013 3.987 3 Si 0.942 3.058 4 H -0.264 1.264 5 H -0.280 1.280 6 H -0.257 1.257 7 C -0.516 4.516 8 H 0.044 0.956 9 C 0.174 3.826 10 N -0.539 5.539 11 C 0.057 3.943 12 C -0.103 4.103 13 C -0.113 4.113 14 C 0.172 3.828 15 H 0.092 0.908 16 N -0.373 5.373 17 C 0.051 3.949 18 C -0.282 4.282 19 C 0.036 3.964 20 N -0.347 5.347 21 C 0.055 3.945 22 H 0.268 0.732 23 H 0.022 0.978 24 H -0.011 1.011 25 H 0.062 0.938 26 H 0.032 0.968 27 H 0.065 0.935 28 H 0.102 0.898 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.197 0.803 32 H 0.172 0.828 33 H 0.207 0.793 34 H 0.055 0.945 35 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.429 -9.008 -4.149 20.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.185 4.185 3 Si 0.766 3.234 4 H -0.189 1.189 5 H -0.205 1.205 6 H -0.181 1.181 7 C -0.554 4.554 8 H 0.062 0.938 9 C 0.047 3.953 10 N -0.264 5.264 11 C -0.071 4.071 12 C -0.142 4.142 13 C -0.152 4.152 14 C 0.069 3.931 15 H 0.110 0.890 16 N -0.155 5.155 17 C -0.095 4.095 18 C -0.311 4.311 19 C -0.149 4.149 20 N -0.168 5.168 21 C -0.074 4.074 22 H 0.077 0.923 23 H 0.040 0.960 24 H 0.007 0.993 25 H 0.080 0.920 26 H 0.050 0.950 27 H 0.084 0.916 28 H 0.120 0.880 29 H 0.104 0.896 30 H 0.109 0.891 31 H 0.214 0.786 32 H 0.190 0.810 33 H 0.223 0.777 34 H 0.074 0.926 35 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 16.977 -9.149 -2.896 19.501 hybrid contribution 0.687 1.505 -0.915 1.890 sum 17.664 -7.644 -3.811 19.621 Atomic orbital electron populations 1.70030 1.07948 1.28149 1.52317 1.25765 0.95556 1.02850 0.94347 0.85788 0.79276 0.79106 0.79212 1.18944 1.20515 1.18064 1.21195 0.90616 0.93502 1.50079 0.93781 1.19911 0.94636 0.85928 0.94843 1.61705 1.11030 1.17346 1.36345 1.22101 1.00983 0.94843 0.89153 1.21539 0.94421 0.94620 1.03577 1.21908 0.97306 1.00990 0.94959 1.21175 0.74942 0.95938 1.01038 0.89023 1.48924 1.06303 1.56339 1.03955 1.23094 0.88758 1.00535 0.97151 1.21868 0.99084 1.16792 0.93403 1.24451 0.93370 0.98915 0.98166 1.77363 1.08871 1.25996 1.04568 1.22302 0.88938 0.95931 1.00273 0.92318 0.95996 0.99314 0.91969 0.94984 0.91590 0.88007 0.89551 0.89125 0.78578 0.81019 0.77660 0.92636 0.94602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.64 13.96 21.45 0.30 -58.34 16 2 C 0.01 0.74 5.47 84.65 0.46 1.20 16 3 Si 0.94 44.21 27.47 68.60 1.88 46.10 16 4 H -0.26 -11.81 7.11 99.48 0.71 -11.11 16 5 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 6 H -0.26 -11.48 6.54 99.48 0.65 -10.83 16 7 C -0.52 -29.68 8.98 25.60 0.23 -29.45 16 8 H 0.04 2.80 7.36 -2.91 -0.02 2.78 16 9 C 0.17 8.42 3.79 85.56 0.32 8.74 16 10 N -0.54 -22.07 4.65 -900.92 -4.19 -26.25 16 11 C 0.06 2.01 5.30 86.33 0.46 2.46 16 12 C -0.10 -2.61 6.09 30.65 0.19 -2.43 16 13 C -0.11 -2.44 4.97 30.67 0.15 -2.29 16 14 C 0.17 4.86 3.37 45.04 0.15 5.01 16 15 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 16 N -0.37 -10.18 3.53 -327.23 -1.16 -11.34 16 17 C 0.05 1.07 10.59 83.54 0.88 1.95 16 18 C -0.28 -5.51 10.80 21.99 0.24 -5.27 16 19 C 0.04 0.83 12.03 85.24 1.03 1.85 16 20 N -0.35 -10.45 12.58 -57.02 -0.72 -11.16 16 21 C 0.06 1.89 5.07 86.33 0.44 2.32 16 22 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 23 H 0.02 1.09 7.05 -2.39 -0.02 1.07 16 24 H -0.01 -0.51 7.55 -2.39 -0.02 -0.53 16 25 H 0.06 2.60 6.70 -2.39 -0.02 2.58 16 26 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.10 2.01 8.14 -2.38 -0.02 1.99 16 29 H 0.09 1.56 7.04 -2.39 -0.02 1.54 16 30 H 0.09 1.66 8.14 -2.38 -0.02 1.64 16 31 H 0.20 2.81 7.20 -2.91 -0.02 2.79 16 32 H 0.17 2.26 8.06 -2.91 -0.02 2.23 16 33 H 0.21 3.18 8.06 -2.91 -0.02 3.16 16 34 H 0.06 2.10 8.01 -2.39 -0.02 2.08 16 35 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -69.69 283.58 1.68 -68.02 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: 1.00 Total: 8.87 kcal Atomic # 6 Polarization: -20.44 SS G_CDS: 4.55 Total: -15.89 kcal Atomic # 7 Polarization: -101.34 SS G_CDS: -5.76 Total: -107.10 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 1.88 Total: 46.10 kcal Total: -69.69 1.68 -68.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334228264.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.410 kcal (2) G-P(sol) polarization free energy of solvation -69.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds