Wall clock time and date at job start Sun Mar 29 2020 22:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 109.47166 * 2 1 4 4 N 1.46504 * 109.47249 * 180.02562 * 3 2 1 5 5 C 1.36939 * 119.99715 * 92.42075 * 4 3 2 6 6 H 1.08003 * 120.00146 * 33.88486 * 5 4 3 7 7 C 1.38813 * 119.99650 * 213.60730 * 5 4 3 8 8 N 1.31611 * 120.00139 * 23.43394 * 7 5 4 9 9 Si 1.86803 * 119.99800 * 203.42990 * 7 5 4 10 10 H 1.48501 * 109.46811 * 90.00019 * 9 7 5 11 11 H 1.48497 * 109.47270 * 210.00089 * 9 7 5 12 12 H 1.48502 * 109.47338 * 330.00461 * 9 7 5 13 13 C 1.46497 * 119.99935 * 272.42010 * 4 3 2 14 14 C 1.50697 * 109.47196 * 269.99929 * 13 4 3 15 15 N 1.31809 * 119.12448 * 90.00164 * 14 13 4 16 16 C 1.32313 * 120.82168 * 179.97438 * 15 14 13 17 17 C 1.38617 * 119.10188 * 0.02562 * 16 15 14 18 18 C 1.38576 * 118.40016 * 359.97438 * 17 16 15 19 19 C 1.50707 * 120.44815 * 180.02562 * 18 17 16 20 20 N 1.31781 * 119.12426 * 269.73451 * 14 13 4 21 21 H 1.08999 * 109.47156 * 299.99708 * 1 2 3 22 22 H 1.09001 * 109.47282 * 59.99625 * 1 2 3 23 23 H 1.09002 * 109.47458 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47156 * 240.00292 * 2 1 3 25 25 H 1.08994 * 109.47606 * 120.00377 * 2 1 3 26 26 H 1.08999 * 109.46845 * 60.00101 * 3 2 1 27 27 H 1.09001 * 109.47327 * 300.00348 * 3 2 1 28 28 H 0.96996 * 119.99904 * 180.02562 * 8 7 5 29 29 H 1.09002 * 109.47056 * 30.00156 * 13 4 3 30 30 H 1.09000 * 109.46529 * 149.99960 * 13 4 3 31 31 H 1.07998 * 120.45348 * 179.97438 * 16 15 14 32 32 H 1.08005 * 120.80295 * 179.97438 * 17 16 15 33 33 H 1.08999 * 109.47329 * 89.99989 * 19 18 17 34 34 H 1.08998 * 109.47159 * 209.99868 * 19 18 17 35 35 H 1.09004 * 109.46712 * 329.99610 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1891 1.4928 -1.1858 6 1 3.7863 2.0501 -2.0187 7 6 5.4032 0.8323 -1.3149 8 7 5.6861 -0.1843 -0.5284 9 14 6.6353 1.3863 -2.6050 10 1 7.5376 2.4104 -2.0201 11 1 7.4366 0.2206 -3.0570 12 1 5.9111 1.9683 -3.7635 13 6 4.2380 1.3888 1.2666 14 6 4.4894 2.7898 1.7614 15 7 3.5994 3.3619 2.5476 16 6 3.7864 4.5905 3.0018 17 6 4.9356 5.2756 2.6396 18 6 5.8479 4.6411 1.8116 19 6 7.1130 5.3429 1.3895 20 7 5.5956 3.4086 1.4007 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 1.6766 1.9563 0.8900 27 1 1.6766 1.9564 -0.8900 28 1 6.5346 -0.6456 -0.6183 29 1 3.6492 0.8432 2.0041 30 1 5.1903 0.8809 1.1141 31 1 3.0531 5.0536 3.6454 32 1 5.1159 6.2797 2.9941 33 1 7.9026 5.1339 2.1113 34 1 7.4162 4.9849 0.4056 35 1 6.9353 6.4175 1.3462 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336643886.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:40 Heat of formation + Delta-G solvation = 56.076180 kcal Electronic energy + Delta-G solvation = -16787.616651 eV Core-core repulsion = 14207.168658 eV Total energy + Delta-G solvation = -2580.447993 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.30320 -36.15643 -33.77684 -32.99014 -32.04307 -30.45020 -28.18856 -26.67617 -25.49171 -23.01761 -22.30180 -21.15069 -19.81563 -16.93926 -16.84055 -15.58621 -14.84778 -14.65807 -14.48943 -14.12772 -13.73294 -13.14815 -13.09112 -12.73626 -12.42069 -12.29986 -12.00651 -11.43736 -11.32073 -10.92528 -10.72076 -10.59949 -10.32346 -10.14989 -10.01890 -9.92200 -9.83135 -9.61065 -8.77926 -8.50004 -8.43402 -6.68275 -5.80305 -3.30733 1.55504 1.75095 3.42856 3.48995 3.51193 4.36158 4.57324 4.68493 4.81928 4.98358 5.40344 5.45302 5.56205 5.60638 5.71495 5.77681 5.81729 5.89235 6.10027 6.18303 6.22995 6.34013 6.38234 6.57268 6.69435 6.74664 6.81800 7.10807 7.12484 7.31935 7.61330 7.77102 7.83409 8.47796 8.99371 9.14783 9.80582 10.34719 11.21847 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.015956 B = 0.011872 C = 0.007416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.354467 B = 2357.848183 C = 3774.461652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.138 4.138 3 C 0.148 3.852 4 N -0.567 5.567 5 C -0.258 4.258 6 H 0.060 0.940 7 C 0.024 3.976 8 N -0.880 5.880 9 Si 0.897 3.103 10 H -0.282 1.282 11 H -0.292 1.292 12 H -0.280 1.280 13 C 0.197 3.803 14 C 0.327 3.673 15 N -0.529 5.529 16 C 0.138 3.862 17 C -0.261 4.261 18 C 0.165 3.835 19 C -0.103 4.103 20 N -0.496 5.496 21 H 0.045 0.955 22 H 0.046 0.954 23 H 0.042 0.958 24 H 0.063 0.937 25 H 0.052 0.948 26 H 0.040 0.960 27 H 0.041 0.959 28 H 0.256 0.744 29 H 0.052 0.948 30 H 0.125 0.875 31 H 0.154 0.846 32 H 0.132 0.868 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.103 7.821 5.594 9.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.178 4.178 3 C 0.022 3.978 4 N -0.286 5.286 5 C -0.387 4.387 6 H 0.078 0.922 7 C -0.177 4.177 8 N -0.522 5.522 9 Si 0.727 3.273 10 H -0.209 1.209 11 H -0.218 1.218 12 H -0.205 1.205 13 C 0.069 3.931 14 C 0.059 3.941 15 N -0.245 5.245 16 C -0.029 4.029 17 C -0.284 4.284 18 C 0.017 3.983 19 C -0.161 4.161 20 N -0.211 5.211 21 H 0.064 0.936 22 H 0.065 0.935 23 H 0.062 0.938 24 H 0.082 0.918 25 H 0.071 0.929 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.142 0.858 31 H 0.171 0.829 32 H 0.150 0.850 33 H 0.096 0.904 34 H 0.099 0.901 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.142 6.732 5.223 8.786 hybrid contribution 0.789 1.407 -0.266 1.635 sum -1.353 8.139 4.956 9.625 Atomic orbital electron populations 1.21744 0.97712 1.00299 1.00703 1.22038 0.93106 1.00515 1.02141 1.20988 0.84475 0.93746 0.98623 1.43733 0.99697 1.83671 1.01451 1.19016 1.03225 1.25569 0.90931 0.92197 1.24972 1.00077 0.94637 0.98043 1.69919 1.23355 1.18227 1.40670 0.86385 0.81781 0.78074 0.81078 1.20898 1.21835 1.20548 1.20037 1.01827 0.84728 0.86558 1.25467 0.83234 1.00092 0.85341 1.68437 1.32354 1.10901 1.12768 1.23076 0.94687 0.90531 0.94573 1.22471 0.98390 1.02715 1.04866 1.21767 0.95250 0.90839 0.90442 1.20713 0.93397 0.98895 1.03065 1.68373 1.21929 1.08339 1.22429 0.93586 0.93509 0.93837 0.91836 0.92889 0.94151 0.94077 0.93357 0.93010 0.85805 0.82880 0.85035 0.90398 0.90120 0.90941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 9.91 37.15 0.37 -1.97 16 2 C -0.14 -2.78 6.26 -26.73 -0.17 -2.95 16 3 C 0.15 3.25 5.67 -4.04 -0.02 3.23 16 4 N -0.57 -14.44 2.44 -174.61 -0.43 -14.86 16 5 C -0.26 -7.14 9.47 -15.06 -0.14 -7.28 16 6 H 0.06 1.68 7.93 -52.48 -0.42 1.27 16 7 C 0.02 0.65 4.94 -17.43 -0.09 0.57 16 8 N -0.88 -25.06 11.32 55.49 0.63 -24.43 16 9 Si 0.90 22.09 29.61 -169.99 -5.03 17.06 16 10 H -0.28 -7.02 7.11 56.52 0.40 -6.61 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 13 C 0.20 4.89 5.74 -5.20 -0.03 4.86 16 14 C 0.33 7.53 7.23 -157.20 -1.14 6.40 16 15 N -0.53 -10.90 10.33 -10.73 -0.11 -11.01 16 16 C 0.14 2.29 11.31 -17.20 -0.19 2.10 16 17 C -0.26 -4.07 9.86 -39.32 -0.39 -4.45 16 18 C 0.16 3.01 6.82 -82.24 -0.56 2.45 16 19 C -0.10 -1.46 10.22 36.01 0.37 -1.09 16 20 N -0.50 -11.28 10.27 -6.99 -0.07 -11.35 16 21 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 22 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 25 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 26 H 0.04 0.86 8.09 -51.93 -0.42 0.44 16 27 H 0.04 0.90 8.02 -51.93 -0.42 0.48 16 28 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 29 H 0.05 1.23 8.07 -51.93 -0.42 0.81 16 30 H 0.12 3.42 5.31 -51.93 -0.28 3.15 16 31 H 0.15 1.90 8.06 -52.49 -0.42 1.48 16 32 H 0.13 1.52 8.06 -52.48 -0.42 1.10 16 33 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 LS Contribution 299.65 15.07 4.52 4.52 Total: -1.00 -30.58 299.65 -7.80 -38.37 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: -5.31 Total: -0.14 kcal Atomic # 6 Polarization: 3.85 SS G_CDS: -1.99 Total: 1.85 kcal Atomic # 7 Polarization: -61.68 SS G_CDS: 0.02 Total: -61.66 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.03 Total: 17.06 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -30.58 -7.80 -38.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336643886.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.449 kcal (2) G-P(sol) polarization free energy of solvation -30.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds