Wall clock time and date at job start Sun Mar 29 2020 22:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 109.47166 * 2 1 4 4 N 1.46504 * 109.47249 * 180.02562 * 3 2 1 5 5 C 1.36939 * 119.99715 * 92.42075 * 4 3 2 6 6 H 1.08003 * 120.00146 * 33.88486 * 5 4 3 7 7 C 1.38813 * 119.99650 * 213.60730 * 5 4 3 8 8 N 1.31611 * 120.00139 * 23.43394 * 7 5 4 9 9 Si 1.86803 * 119.99800 * 203.42990 * 7 5 4 10 10 H 1.48501 * 109.46811 * 90.00019 * 9 7 5 11 11 H 1.48497 * 109.47270 * 210.00089 * 9 7 5 12 12 H 1.48502 * 109.47338 * 330.00461 * 9 7 5 13 13 C 1.46497 * 119.99935 * 272.42010 * 4 3 2 14 14 C 1.50697 * 109.47196 * 269.99929 * 13 4 3 15 15 N 1.31809 * 119.12448 * 90.00164 * 14 13 4 16 16 C 1.32313 * 120.82168 * 179.97438 * 15 14 13 17 17 C 1.38617 * 119.10188 * 0.02562 * 16 15 14 18 18 C 1.38576 * 118.40016 * 359.97438 * 17 16 15 19 19 C 1.50707 * 120.44815 * 180.02562 * 18 17 16 20 20 N 1.31781 * 119.12426 * 269.73451 * 14 13 4 21 21 H 1.08999 * 109.47156 * 299.99708 * 1 2 3 22 22 H 1.09001 * 109.47282 * 59.99625 * 1 2 3 23 23 H 1.09002 * 109.47458 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47156 * 240.00292 * 2 1 3 25 25 H 1.08994 * 109.47606 * 120.00377 * 2 1 3 26 26 H 1.08999 * 109.46845 * 60.00101 * 3 2 1 27 27 H 1.09001 * 109.47327 * 300.00348 * 3 2 1 28 28 H 0.96996 * 119.99904 * 180.02562 * 8 7 5 29 29 H 1.09002 * 109.47056 * 30.00156 * 13 4 3 30 30 H 1.09000 * 109.46529 * 149.99960 * 13 4 3 31 31 H 1.07998 * 120.45348 * 179.97438 * 16 15 14 32 32 H 1.08005 * 120.80295 * 179.97438 * 17 16 15 33 33 H 1.08999 * 109.47329 * 89.99989 * 19 18 17 34 34 H 1.08998 * 109.47159 * 209.99868 * 19 18 17 35 35 H 1.09004 * 109.46712 * 329.99610 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1891 1.4928 -1.1858 6 1 3.7863 2.0501 -2.0187 7 6 5.4032 0.8323 -1.3149 8 7 5.6861 -0.1843 -0.5284 9 14 6.6353 1.3863 -2.6050 10 1 7.5376 2.4104 -2.0201 11 1 7.4366 0.2206 -3.0570 12 1 5.9111 1.9683 -3.7635 13 6 4.2380 1.3888 1.2666 14 6 4.4894 2.7898 1.7614 15 7 3.5994 3.3619 2.5476 16 6 3.7864 4.5905 3.0018 17 6 4.9356 5.2756 2.6396 18 6 5.8479 4.6411 1.8116 19 6 7.1130 5.3429 1.3895 20 7 5.5956 3.4086 1.4007 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 1.6766 1.9563 0.8900 27 1 1.6766 1.9564 -0.8900 28 1 6.5346 -0.6456 -0.6183 29 1 3.6492 0.8432 2.0041 30 1 5.1903 0.8809 1.1141 31 1 3.0531 5.0536 3.6454 32 1 5.1159 6.2797 2.9941 33 1 7.9026 5.1339 2.1113 34 1 7.4162 4.9849 0.4056 35 1 6.9353 6.4175 1.3462 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336643886.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:39 Heat of formation + Delta-G solvation = 37.601540 kcal Electronic energy + Delta-G solvation = -16788.417771 eV Core-core repulsion = 14207.168658 eV Total energy + Delta-G solvation = -2581.249114 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.77964 -37.99722 -35.19090 -34.69358 -33.71182 -32.23780 -29.51795 -28.35683 -27.33447 -24.59437 -23.82780 -22.74530 -21.58236 -18.84154 -18.41437 -17.01103 -16.70023 -16.26508 -16.03921 -15.76995 -15.45053 -14.80256 -14.62169 -14.09564 -13.82591 -13.72556 -13.27843 -13.18683 -13.02918 -12.73471 -12.55167 -12.27049 -12.20437 -11.96087 -11.80497 -11.51920 -11.39810 -11.31097 -10.54646 -10.16765 -9.96551 -8.69663 -7.87346 -5.42485 0.12249 0.37364 1.42800 1.48964 1.52877 2.49655 2.90165 3.18503 3.35321 3.47134 3.74606 3.80351 4.24690 4.26911 4.35532 4.43017 4.62328 4.63798 4.69733 4.71859 4.82217 4.84021 4.93413 5.06177 5.10838 5.19489 5.26743 5.45199 5.52765 5.58920 5.70996 5.76217 6.34808 6.43157 7.10065 7.47268 7.79756 8.31530 9.12080 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.015956 B = 0.011872 C = 0.007416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.354467 B = 2357.848183 C = 3774.461652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.129 4.129 3 C 0.149 3.851 4 N -0.582 5.582 5 C -0.267 4.267 6 H 0.049 0.951 7 C -0.016 4.016 8 N -0.906 5.906 9 Si 0.949 3.051 10 H -0.287 1.287 11 H -0.289 1.289 12 H -0.273 1.273 13 C 0.206 3.794 14 C 0.306 3.694 15 N -0.547 5.547 16 C 0.132 3.868 17 C -0.235 4.235 18 C 0.141 3.859 19 C -0.099 4.099 20 N -0.541 5.541 21 H 0.060 0.940 22 H 0.055 0.945 23 H 0.059 0.941 24 H 0.035 0.965 25 H 0.039 0.961 26 H 0.048 0.952 27 H 0.038 0.962 28 H 0.253 0.747 29 H 0.048 0.952 30 H 0.092 0.908 31 H 0.201 0.799 32 H 0.185 0.815 33 H 0.095 0.905 34 H 0.057 0.943 35 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.698 10.437 6.603 12.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.169 4.169 3 C 0.024 3.976 4 N -0.302 5.302 5 C -0.397 4.397 6 H 0.067 0.933 7 C -0.215 4.215 8 N -0.550 5.550 9 Si 0.778 3.222 10 H -0.214 1.214 11 H -0.215 1.215 12 H -0.198 1.198 13 C 0.077 3.923 14 C 0.037 3.963 15 N -0.263 5.263 16 C -0.034 4.034 17 C -0.257 4.257 18 C -0.005 4.005 19 C -0.156 4.156 20 N -0.257 5.257 21 H 0.079 0.921 22 H 0.074 0.926 23 H 0.078 0.922 24 H 0.054 0.946 25 H 0.058 0.942 26 H 0.066 0.934 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.109 0.891 31 H 0.218 0.782 32 H 0.202 0.798 33 H 0.114 0.886 34 H 0.076 0.924 35 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -2.747 9.382 6.246 11.601 hybrid contribution 0.962 0.744 -0.441 1.294 sum -1.784 10.127 5.805 11.808 Atomic orbital electron populations 1.21646 0.93992 1.01838 1.01887 1.21887 0.96290 0.98658 1.00060 1.21047 0.82981 0.94876 0.98710 1.43862 1.00875 1.84396 1.01076 1.19078 1.03846 1.25133 0.91619 0.93330 1.25538 1.01306 0.94753 0.99889 1.70032 1.23434 1.19258 1.42250 0.85567 0.79833 0.77469 0.79364 1.21357 1.21527 1.19796 1.19633 0.99969 0.86393 0.86301 1.24721 0.84632 0.99457 0.87468 1.68348 1.31989 1.13086 1.12874 1.23914 0.96100 0.89156 0.94207 1.22995 0.96400 1.04264 1.02011 1.22532 0.97328 0.89825 0.90853 1.20823 0.92081 1.00605 1.02089 1.68256 1.22412 1.10936 1.24116 0.92107 0.92568 0.92155 0.94632 0.94215 0.93408 0.94321 0.93733 0.93412 0.89074 0.78225 0.79815 0.88634 0.92418 0.87051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.13 9.91 71.98 0.71 -3.42 16 2 C -0.13 -5.28 6.26 30.59 0.19 -5.09 16 3 C 0.15 6.68 5.67 86.38 0.49 7.17 16 4 N -0.58 -30.69 2.44 -706.34 -1.72 -32.41 16 5 C -0.27 -15.27 9.47 84.03 0.80 -14.48 16 6 H 0.05 2.83 7.93 -2.91 -0.02 2.81 16 7 C -0.02 -0.94 4.94 84.86 0.42 -0.52 16 8 N -0.91 -53.82 11.32 21.65 0.25 -53.58 16 9 Si 0.95 46.55 29.61 68.60 2.03 48.58 16 10 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 11 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 12 H -0.27 -12.92 7.11 99.48 0.71 -12.22 16 13 C 0.21 10.64 5.74 85.63 0.49 11.13 16 14 C 0.31 14.30 7.23 138.75 1.00 15.30 16 15 N -0.55 -21.94 10.33 -187.85 -1.94 -23.88 16 16 C 0.13 3.89 11.31 84.71 0.96 4.85 16 17 C -0.23 -6.29 9.86 22.44 0.22 -6.07 16 18 C 0.14 4.84 6.82 42.56 0.29 5.13 16 19 C -0.10 -2.52 10.22 71.24 0.73 -1.79 16 20 N -0.54 -24.76 10.27 -176.03 -1.81 -26.57 16 21 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 22 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 23 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 24 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.05 2.04 8.09 -2.39 -0.02 2.02 16 27 H 0.04 1.72 8.02 -2.39 -0.02 1.70 16 28 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 29 H 0.05 2.38 8.07 -2.39 -0.02 2.37 16 30 H 0.09 5.33 5.31 -2.39 -0.01 5.32 16 31 H 0.20 3.89 8.06 -2.91 -0.02 3.87 16 32 H 0.18 2.98 8.06 -2.91 -0.02 2.95 16 33 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.11 1.94 8.10 -2.38 -0.02 1.92 16 Total: -1.00 -70.00 299.65 4.16 -65.84 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: 1.05 Total: 9.80 kcal Atomic # 6 Polarization: 5.91 SS G_CDS: 6.30 Total: 12.21 kcal Atomic # 7 Polarization: -131.21 SS G_CDS: -5.23 Total: -136.44 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.58 kcal Total: -70.00 4.16 -65.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336643886.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.442 kcal (2) G-P(sol) polarization free energy of solvation -70.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds