Wall clock time and date at job start Sun Mar 29 2020 22:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46803 * 2 1 4 4 N 1.46504 * 109.47007 * 180.02562 * 3 2 1 5 5 C 1.36931 * 120.00013 * 275.10742 * 4 3 2 6 6 H 1.08004 * 120.00409 * 37.25055 * 5 4 3 7 7 C 1.38813 * 119.99951 * 217.25269 * 5 4 3 8 8 N 1.31620 * 120.00104 * 22.56835 * 7 5 4 9 9 Si 1.86800 * 120.00207 * 202.57279 * 7 5 4 10 10 H 1.48495 * 109.47406 * 89.99834 * 9 7 5 11 11 H 1.48497 * 109.47048 * 210.00185 * 9 7 5 12 12 H 1.48504 * 109.46809 * 329.99433 * 9 7 5 13 13 C 1.46496 * 119.99738 * 95.10326 * 4 3 2 14 14 C 1.50701 * 109.47376 * 270.00084 * 13 4 3 15 15 N 1.31791 * 119.12286 * 269.72974 * 14 13 4 16 16 C 1.32336 * 120.81953 * 179.75807 * 15 14 13 17 17 C 1.38599 * 119.10183 * 0.50487 * 16 15 14 18 18 C 1.50701 * 120.79987 * 179.77136 * 17 16 15 19 19 C 1.38598 * 118.40064 * 359.75410 * 17 16 15 20 20 N 1.31791 * 119.12133 * 89.99925 * 14 13 4 21 21 H 1.08998 * 109.46855 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.46529 * 299.99525 * 1 2 3 23 23 H 1.08994 * 109.47030 * 59.99481 * 1 2 3 24 24 H 1.08997 * 109.46718 * 240.00771 * 2 1 3 25 25 H 1.08994 * 109.47078 * 119.99964 * 2 1 3 26 26 H 1.09006 * 109.47116 * 60.00336 * 3 2 1 27 27 H 1.09001 * 109.47108 * 300.00219 * 3 2 1 28 28 H 0.96998 * 120.00207 * 180.02562 * 8 7 5 29 29 H 1.08999 * 109.47323 * 149.99815 * 13 4 3 30 30 H 1.09001 * 109.47518 * 30.00431 * 13 4 3 31 31 H 1.08003 * 120.44893 * 180.28121 * 16 15 14 32 32 H 1.09005 * 109.47321 * 269.97835 * 18 17 16 33 33 H 1.09003 * 109.46972 * 29.97818 * 18 17 16 34 34 H 1.09003 * 109.47177 * 149.97899 * 18 17 16 35 35 H 1.07999 * 120.44625 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1902 1.3369 1.1802 6 1 3.8158 0.6981 1.9665 7 6 5.3660 2.0508 1.3668 8 7 5.6007 3.1306 0.6518 9 14 6.6152 1.4789 2.6324 10 1 7.5760 0.5448 1.9927 11 1 7.3489 2.6531 3.1692 12 1 5.9134 0.7844 3.7417 13 6 4.2369 1.5557 -1.2646 14 6 4.4879 0.1793 -1.8247 15 7 5.5946 -0.4556 -1.4944 16 6 5.8467 -1.6673 -1.9629 17 6 4.9335 -2.2624 -2.8191 18 6 5.1845 -3.6388 -3.3791 19 6 3.7839 -1.5614 -3.1474 20 7 3.5974 -0.3552 -2.6359 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3632 0.5138 0.8901 23 1 -0.3633 0.5139 -0.8899 24 1 1.8933 -0.5137 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 1.6767 1.9564 0.8901 27 1 1.6766 1.9564 -0.8900 28 1 6.4225 3.6293 0.7818 29 1 5.1894 2.0559 -1.0895 30 1 3.6476 2.1352 -1.9752 31 1 6.7534 -2.1840 -1.6848 32 1 5.7288 -3.5547 -4.3198 33 1 5.7743 -4.2182 -2.6687 34 1 4.2320 -4.1392 -3.5540 35 1 3.0504 -1.9936 -3.8120 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336648253.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:43 Heat of formation + Delta-G solvation = 55.803813 kcal Electronic energy + Delta-G solvation = -16878.807163 eV Core-core repulsion = 14298.347359 eV Total energy + Delta-G solvation = -2580.459804 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.35048 -36.17959 -33.50379 -33.04140 -32.71188 -30.70249 -28.21605 -25.54448 -25.17225 -23.98086 -22.35612 -21.04986 -20.07905 -17.12275 -16.86123 -15.90788 -14.76933 -14.57428 -14.15491 -13.97906 -13.77198 -13.19762 -13.08860 -12.96666 -12.68482 -12.31513 -12.13558 -11.51928 -11.36816 -10.92885 -10.77228 -10.68682 -10.42876 -10.19939 -10.11305 -10.01000 -9.95867 -9.65365 -8.58336 -8.46682 -8.41902 -6.63268 -5.81475 -3.36017 1.50416 1.74929 3.42544 3.48755 3.51290 4.35525 4.56335 4.78842 4.87440 5.04403 5.14679 5.20206 5.38930 5.54431 5.61716 5.74745 5.81625 5.86904 5.90104 6.12428 6.26756 6.27865 6.34956 6.51774 6.65273 6.70103 6.78464 7.02020 7.10416 7.24015 7.53667 7.71056 7.83901 8.49314 8.95945 9.15039 9.79106 10.35656 11.20275 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.017975 B = 0.010559 C = 0.007718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.333603 B = 2651.169946 C = 3627.054568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.146 4.146 3 C 0.151 3.849 4 N -0.566 5.566 5 C -0.261 4.261 6 H 0.058 0.942 7 C 0.027 3.973 8 N -0.880 5.880 9 Si 0.898 3.102 10 H -0.282 1.282 11 H -0.291 1.291 12 H -0.279 1.279 13 C 0.202 3.798 14 C 0.318 3.682 15 N -0.494 5.494 16 C 0.141 3.859 17 C -0.230 4.230 18 C -0.094 4.094 19 C 0.137 3.863 20 N -0.517 5.517 21 H 0.040 0.960 22 H 0.048 0.952 23 H 0.048 0.952 24 H 0.058 0.942 25 H 0.049 0.951 26 H 0.047 0.953 27 H 0.039 0.961 28 H 0.257 0.743 29 H 0.117 0.883 30 H 0.053 0.947 31 H 0.153 0.847 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.921 -9.411 -6.955 12.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.186 4.186 3 C 0.025 3.975 4 N -0.285 5.285 5 C -0.391 4.391 6 H 0.076 0.924 7 C -0.175 4.175 8 N -0.521 5.521 9 Si 0.727 3.273 10 H -0.208 1.208 11 H -0.218 1.218 12 H -0.204 1.204 13 C 0.073 3.927 14 C 0.050 3.950 15 N -0.207 5.207 16 C -0.027 4.027 17 C -0.235 4.235 18 C -0.153 4.153 19 C -0.031 4.031 20 N -0.232 5.232 21 H 0.059 0.941 22 H 0.067 0.933 23 H 0.067 0.933 24 H 0.077 0.923 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.057 0.943 28 H 0.067 0.933 29 H 0.134 0.866 30 H 0.071 0.929 31 H 0.170 0.830 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -2.972 -8.260 -6.521 10.936 hybrid contribution 0.892 -1.552 0.263 1.809 sum -2.080 -9.812 -6.259 11.823 Atomic orbital electron populations 1.21689 0.97286 1.00167 1.00996 1.22131 0.93885 1.01165 1.01418 1.20939 0.84437 0.93030 0.99066 1.43683 0.99658 1.83634 1.01499 1.18930 1.05960 1.21093 0.93100 0.92402 1.25089 1.00319 0.94157 0.97934 1.69983 1.25392 1.14167 1.42521 0.86384 0.81912 0.78042 0.80944 1.20823 1.21783 1.20448 1.19975 1.01335 0.85123 0.86279 1.25440 0.83468 0.99977 0.86109 1.68493 1.21814 1.08080 1.22334 1.23132 0.97508 0.91252 0.90829 1.21485 0.98766 0.99675 1.03565 1.20513 1.02043 0.92171 1.00534 1.22990 0.94510 0.90379 0.95196 1.68422 1.32000 1.11572 1.11176 0.94091 0.93330 0.93272 0.92320 0.93173 0.93456 0.94258 0.93324 0.86566 0.92912 0.82996 0.91589 0.91689 0.91753 0.83057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 9.91 37.16 0.37 -1.91 16 2 C -0.15 -2.89 6.23 -26.73 -0.17 -3.06 16 3 C 0.15 3.33 5.72 -4.04 -0.02 3.31 16 4 N -0.57 -14.43 2.42 -174.61 -0.42 -14.85 16 5 C -0.26 -7.26 9.45 -15.06 -0.14 -7.40 16 6 H 0.06 1.64 7.93 -52.48 -0.42 1.22 16 7 C 0.03 0.74 4.93 -17.43 -0.09 0.65 16 8 N -0.88 -25.22 11.52 55.49 0.64 -24.58 16 9 Si 0.90 22.16 29.61 -169.99 -5.03 17.13 16 10 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 C 0.20 4.97 5.77 -5.20 -0.03 4.94 16 14 C 0.32 7.18 7.12 -157.20 -1.12 6.06 16 15 N -0.49 -11.07 10.33 -10.72 -0.11 -11.18 16 16 C 0.14 2.49 11.01 -17.20 -0.19 2.30 16 17 C -0.23 -3.47 5.91 -104.36 -0.62 -4.09 16 18 C -0.09 -0.98 10.06 36.01 0.36 -0.62 16 19 C 0.14 2.23 11.01 -17.20 -0.19 2.04 16 20 N -0.52 -10.39 9.09 -10.73 -0.10 -10.49 16 21 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 22 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.06 1.22 6.73 -51.93 -0.35 0.87 16 25 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 26 H 0.05 1.05 8.08 -51.93 -0.42 0.63 16 27 H 0.04 0.82 7.83 -51.93 -0.41 0.42 16 28 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 29 H 0.12 3.20 5.54 -51.93 -0.29 2.91 16 30 H 0.05 1.24 7.86 -51.93 -0.41 0.83 16 31 H 0.15 2.22 8.06 -52.48 -0.42 1.79 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 34 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16 35 H 0.15 1.91 8.06 -52.49 -0.42 1.49 16 LS Contribution 296.73 15.07 4.47 4.47 Total: -1.00 -30.55 296.73 -7.61 -38.16 By element: Atomic # 1 Polarization: 4.34 SS G_CDS: -5.22 Total: -0.89 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: -1.83 Total: 2.23 kcal Atomic # 7 Polarization: -61.12 SS G_CDS: 0.01 Total: -61.11 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.03 Total: 17.13 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -30.55 -7.61 -38.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336648253.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.965 kcal (2) G-P(sol) polarization free energy of solvation -30.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds