Wall clock time and date at job start Sun Mar 29 2020 22:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46803 * 2 1 4 4 N 1.46504 * 109.47007 * 180.02562 * 3 2 1 5 5 C 1.36931 * 120.00013 * 275.10742 * 4 3 2 6 6 H 1.08004 * 120.00409 * 37.25055 * 5 4 3 7 7 C 1.38813 * 119.99951 * 217.25269 * 5 4 3 8 8 N 1.31620 * 120.00104 * 22.56835 * 7 5 4 9 9 Si 1.86800 * 120.00207 * 202.57279 * 7 5 4 10 10 H 1.48495 * 109.47406 * 89.99834 * 9 7 5 11 11 H 1.48497 * 109.47048 * 210.00185 * 9 7 5 12 12 H 1.48504 * 109.46809 * 329.99433 * 9 7 5 13 13 C 1.46496 * 119.99738 * 95.10326 * 4 3 2 14 14 C 1.50701 * 109.47376 * 270.00084 * 13 4 3 15 15 N 1.31791 * 119.12286 * 269.72974 * 14 13 4 16 16 C 1.32336 * 120.81953 * 179.75807 * 15 14 13 17 17 C 1.38599 * 119.10183 * 0.50487 * 16 15 14 18 18 C 1.50701 * 120.79987 * 179.77136 * 17 16 15 19 19 C 1.38598 * 118.40064 * 359.75410 * 17 16 15 20 20 N 1.31791 * 119.12133 * 89.99925 * 14 13 4 21 21 H 1.08998 * 109.46855 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.46529 * 299.99525 * 1 2 3 23 23 H 1.08994 * 109.47030 * 59.99481 * 1 2 3 24 24 H 1.08997 * 109.46718 * 240.00771 * 2 1 3 25 25 H 1.08994 * 109.47078 * 119.99964 * 2 1 3 26 26 H 1.09006 * 109.47116 * 60.00336 * 3 2 1 27 27 H 1.09001 * 109.47108 * 300.00219 * 3 2 1 28 28 H 0.96998 * 120.00207 * 180.02562 * 8 7 5 29 29 H 1.08999 * 109.47323 * 149.99815 * 13 4 3 30 30 H 1.09001 * 109.47518 * 30.00431 * 13 4 3 31 31 H 1.08003 * 120.44893 * 180.28121 * 16 15 14 32 32 H 1.09005 * 109.47321 * 269.97835 * 18 17 16 33 33 H 1.09003 * 109.46972 * 29.97818 * 18 17 16 34 34 H 1.09003 * 109.47177 * 149.97899 * 18 17 16 35 35 H 1.07999 * 120.44625 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1902 1.3369 1.1802 6 1 3.8158 0.6981 1.9665 7 6 5.3660 2.0508 1.3668 8 7 5.6007 3.1306 0.6518 9 14 6.6152 1.4789 2.6324 10 1 7.5760 0.5448 1.9927 11 1 7.3489 2.6531 3.1692 12 1 5.9134 0.7844 3.7417 13 6 4.2369 1.5557 -1.2646 14 6 4.4879 0.1793 -1.8247 15 7 5.5946 -0.4556 -1.4944 16 6 5.8467 -1.6673 -1.9629 17 6 4.9335 -2.2624 -2.8191 18 6 5.1845 -3.6388 -3.3791 19 6 3.7839 -1.5614 -3.1474 20 7 3.5974 -0.3552 -2.6359 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3632 0.5138 0.8901 23 1 -0.3633 0.5139 -0.8899 24 1 1.8933 -0.5137 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 1.6767 1.9564 0.8901 27 1 1.6766 1.9564 -0.8900 28 1 6.4225 3.6293 0.7818 29 1 5.1894 2.0559 -1.0895 30 1 3.6476 2.1352 -1.9752 31 1 6.7534 -2.1840 -1.6848 32 1 5.7288 -3.5547 -4.3198 33 1 5.7743 -4.2182 -2.6687 34 1 4.2320 -4.1392 -3.5540 35 1 3.0504 -1.9936 -3.8120 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336648253.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:42 Heat of formation + Delta-G solvation = 37.656672 kcal Electronic energy + Delta-G solvation = -16879.594082 eV Core-core repulsion = 14298.347359 eV Total energy + Delta-G solvation = -2581.246723 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.81189 -37.99605 -34.90489 -34.57650 -34.36791 -32.53205 -29.70518 -27.36592 -26.63463 -25.37708 -23.98398 -22.56624 -21.84440 -18.90627 -18.47494 -17.46062 -16.73267 -16.22840 -15.72782 -15.45463 -15.20882 -14.81979 -14.64179 -14.36290 -13.87284 -13.58345 -13.28232 -13.17288 -13.09547 -12.69728 -12.59196 -12.43179 -12.19776 -11.98544 -11.88673 -11.69544 -11.51395 -11.32283 -10.52117 -9.93587 -9.91279 -8.64823 -7.88175 -5.48583 0.09768 0.36816 1.42486 1.48712 1.52952 2.48449 2.89858 3.19785 3.41825 3.49433 3.78154 3.81828 4.07258 4.09579 4.23679 4.38152 4.60594 4.68090 4.70682 4.81307 4.87510 4.91581 4.94665 5.14790 5.17376 5.21054 5.22406 5.40315 5.50232 5.59925 5.65558 5.71210 6.28773 6.43015 7.10628 7.44733 7.78377 8.32430 9.10106 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.017975 B = 0.010559 C = 0.007718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.333603 B = 2651.169946 C = 3627.054568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.132 4.132 3 C 0.149 3.851 4 N -0.583 5.583 5 C -0.269 4.269 6 H 0.045 0.955 7 C -0.016 4.016 8 N -0.908 5.908 9 Si 0.952 3.048 10 H -0.287 1.287 11 H -0.287 1.287 12 H -0.273 1.273 13 C 0.210 3.790 14 C 0.298 3.702 15 N -0.537 5.537 16 C 0.119 3.881 17 C -0.201 4.201 18 C -0.092 4.092 19 C 0.127 3.873 20 N -0.529 5.529 21 H 0.059 0.941 22 H 0.055 0.945 23 H 0.060 0.940 24 H 0.049 0.951 25 H 0.027 0.973 26 H 0.037 0.963 27 H 0.047 0.953 28 H 0.255 0.745 29 H 0.083 0.917 30 H 0.050 0.950 31 H 0.180 0.820 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.563 -12.146 -8.134 15.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.172 4.172 3 C 0.024 3.976 4 N -0.302 5.302 5 C -0.399 4.399 6 H 0.063 0.937 7 C -0.214 4.214 8 N -0.550 5.550 9 Si 0.780 3.220 10 H -0.214 1.214 11 H -0.213 1.213 12 H -0.197 1.197 13 C 0.081 3.919 14 C 0.029 3.971 15 N -0.252 5.252 16 C -0.047 4.047 17 C -0.206 4.206 18 C -0.149 4.149 19 C -0.039 4.039 20 N -0.243 5.243 21 H 0.078 0.922 22 H 0.074 0.926 23 H 0.079 0.921 24 H 0.068 0.932 25 H 0.046 0.954 26 H 0.056 0.944 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.100 0.900 30 H 0.069 0.931 31 H 0.197 0.803 32 H 0.105 0.895 33 H 0.097 0.903 34 H 0.105 0.895 35 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -3.624 -11.034 -7.717 13.944 hybrid contribution 1.078 -0.843 0.470 1.447 sum -2.546 -11.877 -7.247 14.144 Atomic orbital electron populations 1.21614 0.93904 1.01744 1.01963 1.21935 0.96682 0.98790 0.99794 1.21032 0.82982 0.94685 0.98871 1.43805 1.00841 1.84392 1.01212 1.18973 1.06550 1.20510 0.93864 0.93700 1.25681 1.01669 0.94274 0.99807 1.70083 1.25632 1.15170 1.44148 0.85538 0.79801 0.77490 0.79191 1.21355 1.21345 1.19745 1.19576 0.99454 0.86791 0.86077 1.24617 0.84848 0.99293 0.88359 1.68338 1.22368 1.10487 1.23969 1.23692 0.99293 0.90240 0.91459 1.22005 0.96756 1.01176 1.00644 1.20653 1.03873 0.88974 1.01423 1.23762 0.95895 0.89186 0.95074 1.68319 1.31474 1.13506 1.11040 0.92181 0.92634 0.92067 0.93205 0.95408 0.94430 0.93493 0.93623 0.89952 0.93124 0.80345 0.89480 0.90323 0.89526 0.78819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.98 9.91 71.98 0.71 -3.27 16 2 C -0.13 -5.19 6.23 30.60 0.19 -5.00 16 3 C 0.15 6.71 5.72 86.38 0.49 7.21 16 4 N -0.58 -30.72 2.42 -706.33 -1.71 -32.42 16 5 C -0.27 -15.46 9.45 84.03 0.79 -14.66 16 6 H 0.05 2.64 7.93 -2.91 -0.02 2.62 16 7 C -0.02 -0.89 4.93 84.86 0.42 -0.47 16 8 N -0.91 -54.07 11.52 21.65 0.25 -53.82 16 9 Si 0.95 46.67 29.61 68.60 2.03 48.70 16 10 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 11 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 12 H -0.27 -12.92 7.11 99.48 0.71 -12.21 16 13 C 0.21 10.77 5.77 85.63 0.49 11.26 16 14 C 0.30 13.65 7.12 138.75 0.99 14.63 16 15 N -0.54 -24.31 10.33 -187.84 -1.94 -26.25 16 16 C 0.12 4.02 11.01 84.70 0.93 4.96 16 17 C -0.20 -5.40 5.91 -19.69 -0.12 -5.52 16 18 C -0.09 -1.42 10.06 71.24 0.72 -0.70 16 19 C 0.13 3.76 11.01 84.70 0.93 4.69 16 20 N -0.53 -20.76 9.09 -187.84 -1.71 -22.46 16 21 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 22 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 23 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 24 H 0.05 2.03 6.73 -2.39 -0.02 2.02 16 25 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.04 1.72 8.08 -2.38 -0.02 1.70 16 27 H 0.05 1.99 7.83 -2.39 -0.02 1.97 16 28 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 29 H 0.08 4.79 5.54 -2.39 -0.01 4.78 16 30 H 0.05 2.49 7.86 -2.39 -0.02 2.48 16 31 H 0.18 4.82 8.06 -2.91 -0.02 4.79 16 32 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 33 H 0.08 1.08 8.10 -2.39 -0.02 1.06 16 34 H 0.09 1.05 8.10 -2.39 -0.02 1.03 16 35 H 0.20 3.96 8.06 -2.91 -0.02 3.93 16 Total: -1.00 -69.21 296.73 4.54 -64.67 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: 1.06 Total: 8.47 kcal Atomic # 6 Polarization: 6.57 SS G_CDS: 6.56 Total: 13.12 kcal Atomic # 7 Polarization: -129.85 SS G_CDS: -5.11 Total: -134.96 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 2.03 Total: 48.70 kcal Total: -69.21 4.54 -64.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336648253.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.325 kcal (2) G-P(sol) polarization free energy of solvation -69.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds