Wall clock time and date at job start Sun Mar 29 2020 22:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46901 * 109.47254 * 2 1 4 4 C 1.46901 * 110.99615 * 298.16588 * 3 2 1 5 5 C 1.50691 * 109.47375 * 293.04332 * 4 3 2 6 6 H 1.08001 * 120.00224 * 354.96871 * 5 4 3 7 7 C 1.37880 * 120.00357 * 174.96240 * 5 4 3 8 8 N 1.31524 * 119.99633 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00660 * 180.02562 * 7 5 4 10 10 H 1.48514 * 109.46812 * 0.02562 * 9 7 5 11 11 H 1.48494 * 109.47303 * 119.99902 * 9 7 5 12 12 H 1.48494 * 109.47386 * 240.00635 * 9 7 5 13 13 C 1.46892 * 111.00165 * 62.12224 * 3 2 1 14 14 C 1.50700 * 109.47195 * 66.04616 * 13 3 2 15 15 N 1.31800 * 119.12374 * 269.72925 * 14 13 3 16 16 C 1.32334 * 120.81817 * 179.76334 * 15 14 13 17 17 C 1.38600 * 119.10287 * 0.49824 * 16 15 14 18 18 C 1.50700 * 120.79864 * 179.77647 * 17 16 15 19 19 C 1.38592 * 118.40028 * 359.75916 * 17 16 15 20 20 N 1.31789 * 119.12179 * 90.00358 * 14 13 3 21 21 H 1.09000 * 109.47271 * 179.81046 * 1 2 3 22 22 H 1.09005 * 109.47224 * 299.81104 * 1 2 3 23 23 H 1.08998 * 109.47108 * 59.81008 * 1 2 3 24 24 H 1.08997 * 109.47234 * 239.99870 * 2 1 3 25 25 H 1.09001 * 109.46823 * 119.99924 * 2 1 3 26 26 H 1.08993 * 109.46957 * 53.04934 * 4 3 2 27 27 H 1.09008 * 109.46709 * 173.04381 * 4 3 2 28 28 H 0.96994 * 119.99703 * 179.97438 * 8 7 5 29 29 H 1.09001 * 109.47166 * 306.04614 * 13 3 2 30 30 H 1.08998 * 109.47357 * 186.04737 * 13 3 2 31 31 H 1.08001 * 120.44823 * 180.28338 * 16 15 14 32 32 H 1.09000 * 109.47056 * 269.98555 * 18 17 16 33 33 H 1.09006 * 109.47172 * 29.97842 * 18 17 16 34 34 H 1.08990 * 109.47464 * 149.98239 * 18 17 16 35 35 H 1.08001 * 120.45097 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5848 2.0970 -1.2091 5 6 2.2609 1.4982 -2.4153 6 1 3.0058 0.7264 -2.2893 7 6 1.9286 1.9354 -3.6800 8 7 1.0217 2.8756 -3.8335 9 14 2.7661 1.1927 -5.1753 10 1 3.7400 0.1611 -4.7358 11 1 1.7459 0.5669 -6.0543 12 1 3.4782 2.2589 -5.9245 13 6 1.5906 2.0951 1.2122 14 6 2.2553 1.4798 2.4166 15 7 1.6524 0.4919 3.0473 16 6 2.2079 -0.0759 4.1057 17 6 3.4343 0.3887 4.5542 18 6 4.0990 -0.2265 5.7586 19 6 4.0347 1.4326 3.8681 20 7 3.4214 1.9476 2.8145 21 1 -0.3634 -1.0276 -0.0034 22 1 -0.3634 0.5109 0.8917 23 1 -0.3633 0.5168 -0.8883 24 1 1.8933 -0.5138 -0.8899 25 1 1.8932 -0.5138 0.8900 26 1 0.5039 2.0056 -1.3156 27 1 1.8539 3.1502 -1.1271 28 1 0.7882 3.1834 -4.7232 29 1 0.5082 2.0171 1.3151 30 1 1.8737 3.1450 1.1377 31 1 1.7108 -0.8881 4.6152 32 1 3.7809 0.3006 6.6581 33 1 3.8155 -1.2764 5.8334 34 1 5.1813 -0.1489 5.6556 35 1 4.9901 1.8208 4.1891 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336649897.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:14 Heat of formation + Delta-G solvation = 50.252702 kcal Electronic energy + Delta-G solvation = -16423.830502 eV Core-core repulsion = 13843.129983 eV Total energy + Delta-G solvation = -2580.700518 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.93868 -37.18960 -33.86968 -33.52900 -32.48614 -29.79932 -28.69992 -26.47871 -24.57519 -24.49472 -23.07770 -21.78547 -19.40453 -17.59558 -16.56014 -16.02562 -15.40083 -14.87248 -14.44929 -14.40349 -13.97004 -13.52701 -13.34214 -13.08163 -12.66041 -12.61125 -12.12450 -11.72506 -11.43360 -11.11354 -10.86088 -10.80112 -10.69483 -10.56092 -10.43493 -9.96636 -9.71985 -9.21924 -9.03909 -8.98930 -8.38970 -7.16648 -5.98535 -3.98871 1.00213 1.25801 3.34086 3.41376 3.46706 3.85405 4.19290 4.34459 4.48199 4.63786 4.77750 4.79444 5.19627 5.34135 5.37111 5.45730 5.50325 5.74485 5.79916 5.93929 6.02932 6.10985 6.22047 6.30258 6.54610 6.63618 6.77036 7.01534 7.16865 7.33866 7.47920 7.84780 8.11639 8.21699 8.36371 8.57509 9.08970 9.64750 11.12263 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.041831 B = 0.005477 C = 0.005328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.199130 B = 5110.930497 C = 5253.591924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.063 3.937 3 N -0.527 5.527 4 C 0.190 3.810 5 C -0.502 4.502 6 H 0.062 0.938 7 C 0.055 3.945 8 N -0.899 5.899 9 Si 0.896 3.104 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.284 1.284 13 C 0.113 3.887 14 C 0.339 3.661 15 N -0.509 5.509 16 C 0.143 3.857 17 C -0.211 4.211 18 C -0.100 4.100 19 C 0.145 3.855 20 N -0.498 5.498 21 H 0.045 0.955 22 H 0.050 0.950 23 H 0.066 0.934 24 H 0.078 0.922 25 H 0.050 0.950 26 H 0.007 0.993 27 H 0.028 0.972 28 H 0.260 0.740 29 H 0.057 0.943 30 H 0.092 0.908 31 H 0.162 0.838 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.823 -5.439 17.227 18.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.065 4.065 3 N -0.251 5.251 4 C 0.065 3.935 5 C -0.540 4.540 6 H 0.081 0.919 7 C -0.146 4.146 8 N -0.539 5.539 9 Si 0.725 3.275 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.210 1.210 13 C -0.017 4.017 14 C 0.072 3.928 15 N -0.223 5.223 16 C -0.024 4.024 17 C -0.215 4.215 18 C -0.158 4.158 19 C -0.022 4.022 20 N -0.211 5.211 21 H 0.064 0.936 22 H 0.069 0.931 23 H 0.085 0.915 24 H 0.096 0.904 25 H 0.068 0.932 26 H 0.025 0.975 27 H 0.046 0.954 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.110 0.890 31 H 0.179 0.821 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 2.797 -4.908 16.251 17.205 hybrid contribution -0.022 -0.751 -0.079 0.756 sum 2.774 -5.659 16.172 17.357 Atomic orbital electron populations 1.22310 0.98970 1.00965 1.01942 1.21944 0.92600 0.90997 1.00981 1.62350 1.59271 1.02148 1.01379 1.19821 0.94922 0.93750 0.84978 1.21158 1.21834 1.21109 0.89938 0.91935 1.24965 0.95317 0.95291 0.98995 1.69969 1.32098 1.29163 1.22663 0.86462 0.79331 0.79076 0.82680 1.19724 1.21163 1.21043 1.20842 0.96470 0.98038 0.86355 1.23363 0.87230 0.88008 0.94215 1.68349 1.36230 1.09780 1.07939 1.23103 0.91325 0.96653 0.91289 1.21641 0.98471 1.00367 1.01061 1.20587 1.00375 1.00499 0.94317 1.23164 0.98685 0.90923 0.89400 1.68324 1.09589 1.30040 1.13174 0.93618 0.93100 0.91536 0.90361 0.93175 0.97543 0.95441 0.93037 0.92535 0.88971 0.82125 0.91047 0.91250 0.91190 0.82024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.53 9.26 37.15 0.34 -3.19 16 2 C 0.06 1.33 5.64 -3.83 -0.02 1.30 16 3 N -0.53 -11.96 4.69 -237.53 -1.11 -13.08 16 4 C 0.19 4.99 4.52 -4.98 -0.02 4.97 16 5 C -0.50 -14.28 8.40 -34.44 -0.29 -14.57 16 6 H 0.06 1.79 7.37 -52.49 -0.39 1.41 16 7 C 0.06 1.58 5.46 -17.81 -0.10 1.48 16 8 N -0.90 -26.79 13.29 55.43 0.74 -26.05 16 9 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 16 10 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 12 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 13 C 0.11 2.22 5.19 -4.98 -0.03 2.20 16 14 C 0.34 6.12 6.41 -157.19 -1.01 5.11 16 15 N -0.51 -8.31 9.21 -10.72 -0.10 -8.41 16 16 C 0.14 1.80 11.01 -17.20 -0.19 1.61 16 17 C -0.21 -2.35 5.91 -104.36 -0.62 -2.96 16 18 C -0.10 -0.69 10.06 36.01 0.36 -0.33 16 19 C 0.15 1.90 11.01 -17.20 -0.19 1.71 16 20 N -0.50 -8.61 10.33 -10.72 -0.11 -8.72 16 21 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 22 H 0.05 0.93 6.33 -51.93 -0.33 0.61 16 23 H 0.07 1.44 6.29 -51.93 -0.33 1.11 16 24 H 0.08 1.77 6.98 -51.93 -0.36 1.40 16 25 H 0.05 1.00 6.44 -51.93 -0.33 0.67 16 26 H 0.01 0.19 6.01 -51.93 -0.31 -0.13 16 27 H 0.03 0.77 7.91 -51.92 -0.41 0.36 16 28 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 29 H 0.06 1.08 6.07 -51.93 -0.32 0.77 16 30 H 0.09 1.81 7.92 -51.93 -0.41 1.40 16 31 H 0.16 1.46 8.06 -52.49 -0.42 1.04 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.41 8.10 -51.93 -0.42 -0.01 16 34 H 0.07 0.42 8.10 -51.93 -0.42 0.00 16 35 H 0.16 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 289.49 15.07 4.36 4.36 Total: -1.00 -31.87 289.49 -7.85 -39.73 By element: Atomic # 1 Polarization: 2.77 SS G_CDS: -4.86 Total: -2.08 kcal Atomic # 6 Polarization: -0.92 SS G_CDS: -1.75 Total: -2.67 kcal Atomic # 7 Polarization: -55.67 SS G_CDS: -0.59 Total: -56.26 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -31.87 -7.85 -39.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336649897.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.981 kcal (2) G-P(sol) polarization free energy of solvation -31.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds