Wall clock time and date at job start Sun Mar 29 2020 22:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86791 * 120.00220 * 2 1 4 4 H 1.48500 * 109.47374 * 269.99805 * 3 2 1 5 5 H 1.48498 * 109.47251 * 29.99772 * 3 2 1 6 6 H 1.48504 * 109.47301 * 149.99534 * 3 2 1 7 7 C 1.37884 * 119.99500 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99446 * 159.45575 * 7 2 1 9 9 C 1.50696 * 120.00258 * 339.45244 * 7 2 1 10 10 C 1.53001 * 115.55004 * 324.15345 * 9 7 2 11 11 N 1.46905 * 109.47133 * 281.03088 * 10 9 7 12 12 C 1.46903 * 110.99819 * 181.63130 * 11 10 9 13 13 H 1.08999 * 112.88566 * 29.95237 * 12 11 10 14 14 C 1.53953 * 113.74503 * 258.52435 * 12 11 10 15 15 C 1.53954 * 87.29074 * 220.78456 * 14 12 11 16 16 C 1.52903 * 86.78603 * 24.73807 * 15 14 12 17 17 C 1.52906 * 121.14140 * 209.37719 * 16 15 14 18 18 C 1.53946 * 86.78383 * 209.37669 * 17 16 15 19 19 C 1.52911 * 121.13798 * 100.81356 * 16 15 14 20 20 C 1.52992 * 117.51872 * 109.85258 * 9 7 2 21 21 C 1.52992 * 117.50069 * 178.48491 * 9 7 2 22 22 H 0.97005 * 119.99361 * 5.06841 * 1 2 3 23 23 H 1.08999 * 109.47257 * 161.03080 * 10 9 7 24 24 H 1.09004 * 109.47333 * 41.03211 * 10 9 7 25 25 H 1.00895 * 110.99858 * 305.58654 * 11 10 9 26 26 H 1.08999 * 113.58172 * 335.38643 * 14 12 11 27 27 H 1.08999 * 113.57848 * 106.10725 * 14 12 11 28 28 H 1.09004 * 113.66226 * 270.26220 * 15 14 12 29 29 H 1.09001 * 113.65890 * 139.21062 * 15 14 12 30 30 H 1.09007 * 113.65979 * 94.90486 * 17 16 15 31 31 H 1.09001 * 113.66364 * 323.85190 * 17 16 15 32 32 H 1.09007 * 113.58023 * 139.33975 * 18 17 16 33 33 H 1.08999 * 113.58022 * 270.13387 * 18 17 16 34 34 H 1.08994 * 113.66123 * 36.15281 * 19 16 15 35 35 H 1.08999 * 113.65857 * 265.09483 * 19 16 15 36 36 H 1.09001 * 117.49902 * 214.96938 * 20 9 7 37 37 H 1.09002 * 117.50092 * 359.97438 * 20 9 7 38 38 H 1.09005 * 117.49771 * 359.97238 * 21 9 7 39 39 H 1.09003 * 117.50394 * 144.97203 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1942 0.0005 8 1 3.0329 -1.2240 -0.3277 9 6 1.3228 -2.4575 0.4591 10 6 0.3319 -2.2911 1.6130 11 7 1.0681 -2.1949 2.8806 12 6 0.1454 -2.0728 4.0172 13 1 -0.8089 -2.5702 3.8438 14 6 0.0051 -0.6353 4.5502 15 6 0.0207 -1.2372 5.9672 16 6 0.7818 -2.4182 5.3641 17 6 0.6625 -3.8221 5.9580 18 6 2.0947 -4.0653 5.4485 19 6 2.2986 -2.5408 5.5136 20 6 1.0015 -3.5123 -0.6014 21 6 2.1298 -3.7561 0.4028 22 1 -0.4849 0.8369 -0.0742 23 1 -0.3361 -3.1518 1.6452 24 1 -0.2523 -1.3833 1.4622 25 1 1.6868 -2.9828 3.0002 26 1 0.8675 -0.0044 4.3350 27 1 -0.9410 -0.1628 4.2863 28 1 -0.9687 -1.4997 6.3419 29 1 0.6060 -0.6585 6.6818 30 1 -0.0876 -4.4425 5.4674 31 1 0.5772 -3.8316 7.0447 32 1 2.7189 -4.6191 6.1499 33 1 2.1350 -4.4678 4.4363 34 1 2.6731 -2.1901 6.4752 35 1 2.8555 -2.1374 4.6679 36 1 0.0842 -4.0878 -0.4771 37 1 1.2827 -3.2925 -1.6313 38 1 3.1537 -3.6967 0.0335 39 1 1.9551 -4.4918 1.1879 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336657080.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:09 Heat of formation + Delta-G solvation = 66.161419 kcal Electronic energy + Delta-G solvation = -17418.060830 eV Core-core repulsion = 14941.590508 eV Total energy + Delta-G solvation = -2476.470321 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 235.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.23179 -36.80890 -34.63060 -32.18734 -32.07278 -25.89698 -25.56181 -24.92176 -24.25814 -22.48490 -21.03471 -20.38189 -18.93142 -17.66101 -16.23000 -15.44079 -15.13418 -14.93710 -14.55330 -13.95806 -13.18250 -13.00874 -12.76827 -12.59040 -12.10850 -11.78213 -11.61749 -11.28447 -11.18508 -10.88499 -10.77912 -10.58321 -10.46720 -10.38744 -10.15531 -9.98415 -9.79716 -9.43269 -9.08968 -9.03130 -8.63372 -7.90595 -7.34492 -5.98290 -3.91784 3.34380 3.42759 3.49933 4.47376 4.61028 4.71205 4.88569 4.99105 5.06402 5.11283 5.33424 5.38797 5.62623 5.69528 5.83537 5.85585 5.87886 5.98639 6.05406 6.07766 6.17481 6.27281 6.39962 6.45672 6.49608 6.59569 6.63929 6.71977 6.79006 6.82756 6.87928 7.02325 7.18844 7.39072 7.72960 8.10501 8.19512 8.37537 8.61994 8.99211 9.63649 11.05633 Molecular weight = 235.16amu Principal moments of inertia in cm(-1) A = 0.022905 B = 0.008842 C = 0.007420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.148379 B = 3165.773802 C = 3772.829695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.081 3.919 3 Si 0.887 3.113 4 H -0.285 1.285 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.480 4.480 8 H 0.057 0.943 9 C 0.067 3.933 10 C 0.087 3.913 11 N -0.657 5.657 12 C 0.090 3.910 13 H 0.058 0.942 14 C -0.120 4.120 15 C -0.131 4.131 16 C -0.102 4.102 17 C -0.133 4.133 18 C -0.140 4.140 19 C -0.115 4.115 20 C -0.207 4.207 21 C -0.214 4.214 22 H 0.260 0.740 23 H -0.014 1.014 24 H 0.123 0.877 25 H 0.325 0.675 26 H 0.088 0.912 27 H 0.059 0.941 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.077 0.923 32 H 0.061 0.939 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.060 0.940 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.175 -4.602 11.038 11.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.122 4.122 3 Si 0.715 3.285 4 H -0.211 1.211 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.517 4.517 8 H 0.075 0.925 9 C 0.066 3.934 10 C -0.041 4.041 11 N -0.287 5.287 12 C -0.021 4.021 13 H 0.076 0.924 14 C -0.158 4.158 15 C -0.169 4.169 16 C -0.103 4.103 17 C -0.170 4.170 18 C -0.178 4.178 19 C -0.152 4.152 20 C -0.245 4.245 21 C -0.252 4.252 22 H 0.070 0.930 23 H 0.005 0.995 24 H 0.141 0.859 25 H 0.144 0.856 26 H 0.106 0.894 27 H 0.077 0.923 28 H 0.093 0.907 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.096 0.904 32 H 0.080 0.920 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.103 0.897 36 H 0.079 0.921 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.113 -3.785 11.038 11.669 hybrid contribution 0.022 -0.218 -0.064 0.228 sum 0.135 -4.003 10.974 11.682 Atomic orbital electron populations 1.69843 1.06234 1.26669 1.48353 1.24832 0.94496 0.98830 0.94031 0.86687 0.80534 0.83553 0.77761 1.21144 1.21158 1.19684 1.20354 0.97613 0.90458 1.43244 0.92476 1.18914 0.94358 0.87662 0.92459 1.21881 0.94508 1.01189 0.86546 1.60580 1.19702 1.47550 1.00892 1.22604 0.94499 0.96418 0.88568 0.92404 1.22918 1.02061 0.96930 0.93928 1.22656 0.99685 0.97325 0.97218 1.22697 0.96504 0.93907 0.97192 1.22805 0.97268 0.96893 1.00059 1.22830 0.96743 0.96961 1.01219 1.22554 0.94794 0.95607 1.02237 1.22991 0.97142 1.07997 0.96384 1.22808 0.95927 1.03848 1.02567 0.92971 0.99546 0.85914 0.85620 0.89384 0.92268 0.90736 0.91720 0.92027 0.90443 0.91976 0.90325 0.90595 0.89662 0.92131 0.90478 0.90764 0.92098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.38 11.05 55.43 0.61 -23.77 16 2 C 0.08 2.22 5.07 -17.82 -0.09 2.12 16 3 Si 0.89 21.38 29.59 -169.99 -5.03 16.35 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.48 -13.23 8.99 -34.44 -0.31 -13.54 16 8 H 0.06 1.59 7.90 -52.49 -0.41 1.18 16 9 C 0.07 1.67 1.92 -155.67 -0.30 1.37 16 10 C 0.09 2.05 5.25 -3.82 -0.02 2.03 16 11 N -0.66 -13.49 5.95 -106.24 -0.63 -14.13 16 12 C 0.09 1.58 3.95 -67.26 -0.27 1.32 16 13 H 0.06 1.05 7.91 -51.93 -0.41 0.64 16 14 C -0.12 -2.04 7.89 -25.75 -0.20 -2.24 16 15 C -0.13 -1.80 7.84 -26.28 -0.21 -2.01 16 16 C -0.10 -1.48 1.04 -154.71 -0.16 -1.64 16 17 C -0.13 -1.68 7.84 -26.29 -0.21 -1.88 16 18 C -0.14 -1.78 7.80 -25.75 -0.20 -1.98 16 19 C -0.11 -1.59 7.26 -26.28 -0.19 -1.78 16 20 C -0.21 -4.84 9.88 -26.74 -0.26 -5.11 16 21 C -0.21 -4.72 9.51 -26.74 -0.25 -4.97 16 22 H 0.26 6.95 8.32 -40.82 -0.34 6.61 16 23 H -0.01 -0.31 7.91 -51.93 -0.41 -0.72 16 24 H 0.12 3.27 5.39 -51.93 -0.28 2.99 16 25 H 0.32 6.35 6.14 -39.29 -0.24 6.11 16 26 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 27 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.08 1.07 7.25 -51.93 -0.38 0.69 16 34 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.08 1.35 7.35 -51.93 -0.38 0.97 16 36 H 0.06 1.34 8.09 -51.93 -0.42 0.92 16 37 H 0.08 1.83 8.14 -51.93 -0.42 1.41 16 38 H 0.07 1.62 8.14 -51.93 -0.42 1.19 16 39 H 0.06 1.22 8.08 -51.93 -0.42 0.80 16 LS Contribution 307.91 15.07 4.64 4.64 Total: -1.00 -27.35 307.91 -9.80 -37.15 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -6.72 Total: 8.06 kcal Atomic # 6 Polarization: -25.63 SS G_CDS: -2.67 Total: -28.30 kcal Atomic # 7 Polarization: -37.88 SS G_CDS: -0.02 Total: -37.89 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.03 Total: 16.35 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -27.35 -9.80 -37.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336657080.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.310 kcal (2) G-P(sol) polarization free energy of solvation -27.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds