Wall clock time and date at job start Sun Mar 29 2020 22:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86791 * 120.00220 * 2 1 4 4 H 1.48500 * 109.47374 * 269.99805 * 3 2 1 5 5 H 1.48498 * 109.47251 * 29.99772 * 3 2 1 6 6 H 1.48504 * 109.47301 * 149.99534 * 3 2 1 7 7 C 1.37884 * 119.99500 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99446 * 159.45575 * 7 2 1 9 9 C 1.50696 * 120.00258 * 339.45244 * 7 2 1 10 10 C 1.53001 * 115.55004 * 324.15345 * 9 7 2 11 11 N 1.46905 * 109.47133 * 281.03088 * 10 9 7 12 12 C 1.46903 * 110.99819 * 181.63130 * 11 10 9 13 13 H 1.08999 * 112.88566 * 29.95237 * 12 11 10 14 14 C 1.53953 * 113.74503 * 258.52435 * 12 11 10 15 15 C 1.53954 * 87.29074 * 220.78456 * 14 12 11 16 16 C 1.52903 * 86.78603 * 24.73807 * 15 14 12 17 17 C 1.52906 * 121.14140 * 209.37719 * 16 15 14 18 18 C 1.53946 * 86.78383 * 209.37669 * 17 16 15 19 19 C 1.52911 * 121.13798 * 100.81356 * 16 15 14 20 20 C 1.52992 * 117.51872 * 109.85258 * 9 7 2 21 21 C 1.52992 * 117.50069 * 178.48491 * 9 7 2 22 22 H 0.97005 * 119.99361 * 5.06841 * 1 2 3 23 23 H 1.08999 * 109.47257 * 161.03080 * 10 9 7 24 24 H 1.09004 * 109.47333 * 41.03211 * 10 9 7 25 25 H 1.00895 * 110.99858 * 305.58654 * 11 10 9 26 26 H 1.08999 * 113.58172 * 335.38643 * 14 12 11 27 27 H 1.08999 * 113.57848 * 106.10725 * 14 12 11 28 28 H 1.09004 * 113.66226 * 270.26220 * 15 14 12 29 29 H 1.09001 * 113.65890 * 139.21062 * 15 14 12 30 30 H 1.09007 * 113.65979 * 94.90486 * 17 16 15 31 31 H 1.09001 * 113.66364 * 323.85190 * 17 16 15 32 32 H 1.09007 * 113.58023 * 139.33975 * 18 17 16 33 33 H 1.08999 * 113.58022 * 270.13387 * 18 17 16 34 34 H 1.08994 * 113.66123 * 36.15281 * 19 16 15 35 35 H 1.08999 * 113.65857 * 265.09483 * 19 16 15 36 36 H 1.09001 * 117.49902 * 214.96938 * 20 9 7 37 37 H 1.09002 * 117.50092 * 359.97438 * 20 9 7 38 38 H 1.09005 * 117.49771 * 359.97238 * 21 9 7 39 39 H 1.09003 * 117.50394 * 144.97203 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1942 0.0005 8 1 3.0329 -1.2240 -0.3277 9 6 1.3228 -2.4575 0.4591 10 6 0.3319 -2.2911 1.6130 11 7 1.0681 -2.1949 2.8806 12 6 0.1454 -2.0728 4.0172 13 1 -0.8089 -2.5702 3.8438 14 6 0.0051 -0.6353 4.5502 15 6 0.0207 -1.2372 5.9672 16 6 0.7818 -2.4182 5.3641 17 6 0.6625 -3.8221 5.9580 18 6 2.0947 -4.0653 5.4485 19 6 2.2986 -2.5408 5.5136 20 6 1.0015 -3.5123 -0.6014 21 6 2.1298 -3.7561 0.4028 22 1 -0.4849 0.8369 -0.0742 23 1 -0.3361 -3.1518 1.6452 24 1 -0.2523 -1.3833 1.4622 25 1 1.6868 -2.9828 3.0002 26 1 0.8675 -0.0044 4.3350 27 1 -0.9410 -0.1628 4.2863 28 1 -0.9687 -1.4997 6.3419 29 1 0.6060 -0.6585 6.6818 30 1 -0.0876 -4.4425 5.4674 31 1 0.5772 -3.8316 7.0447 32 1 2.7189 -4.6191 6.1499 33 1 2.1350 -4.4678 4.4363 34 1 2.6731 -2.1901 6.4752 35 1 2.8555 -2.1374 4.6679 36 1 0.0842 -4.0878 -0.4771 37 1 1.2827 -3.2925 -1.6313 38 1 3.1537 -3.6967 0.0335 39 1 1.9551 -4.4918 1.1879 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336657080.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:09 Heat of formation + Delta-G solvation = 52.270037 kcal Electronic energy + Delta-G solvation = -17418.663205 eV Core-core repulsion = 14941.590508 eV Total energy + Delta-G solvation = -2477.072697 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 235.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.43381 -38.64761 -35.87716 -34.15735 -33.74875 -27.81806 -26.76665 -26.54695 -25.43924 -23.96678 -22.84092 -21.57132 -20.86563 -19.02060 -17.99474 -16.91618 -16.57606 -16.36716 -16.16707 -15.68384 -14.92438 -14.68291 -14.17328 -13.82625 -13.55695 -13.18089 -13.05534 -12.95463 -12.81807 -12.48077 -12.37546 -12.30644 -12.11386 -11.99649 -11.73625 -11.33823 -11.11832 -10.94680 -10.75023 -10.56674 -10.54859 -9.89915 -8.98415 -8.06260 -6.05514 1.40042 1.45442 1.55445 2.45551 3.02143 3.35295 3.54449 3.68415 3.76815 3.89990 3.95994 4.02963 4.08789 4.36365 4.52282 4.58059 4.61028 4.70208 4.75579 4.85376 4.90654 4.92112 4.92283 4.98984 5.09941 5.11895 5.13353 5.18868 5.27832 5.31571 5.52106 5.56029 5.59781 5.64732 5.69928 6.11616 6.44287 6.54326 6.85769 6.89899 7.51611 8.96275 Molecular weight = 235.16amu Principal moments of inertia in cm(-1) A = 0.022905 B = 0.008842 C = 0.007420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.148379 B = 3165.773802 C = 3772.829695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.042 3.958 3 Si 0.941 3.059 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.501 4.501 8 H 0.045 0.955 9 C 0.036 3.964 10 C 0.100 3.900 11 N -0.662 5.662 12 C 0.077 3.923 13 H 0.051 0.949 14 C -0.129 4.129 15 C -0.112 4.112 16 C -0.101 4.101 17 C -0.122 4.122 18 C -0.137 4.137 19 C -0.115 4.115 20 C -0.210 4.210 21 C -0.188 4.188 22 H 0.260 0.740 23 H -0.014 1.014 24 H 0.092 0.908 25 H 0.330 0.670 26 H 0.065 0.935 27 H 0.050 0.950 28 H 0.091 0.909 29 H 0.080 0.920 30 H 0.058 0.942 31 H 0.101 0.899 32 H 0.083 0.917 33 H 0.064 0.936 34 H 0.097 0.903 35 H 0.058 0.942 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.076 0.924 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.661 -5.338 12.998 14.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.159 4.159 3 Si 0.768 3.232 4 H -0.205 1.205 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.538 4.538 8 H 0.064 0.936 9 C 0.035 3.965 10 C -0.029 4.029 11 N -0.293 5.293 12 C -0.033 4.033 13 H 0.069 0.931 14 C -0.168 4.168 15 C -0.150 4.150 16 C -0.102 4.102 17 C -0.160 4.160 18 C -0.174 4.174 19 C -0.153 4.153 20 C -0.248 4.248 21 C -0.225 4.225 22 H 0.070 0.930 23 H 0.004 0.996 24 H 0.110 0.890 25 H 0.149 0.851 26 H 0.084 0.916 27 H 0.069 0.931 28 H 0.110 0.890 29 H 0.099 0.901 30 H 0.077 0.923 31 H 0.120 0.880 32 H 0.102 0.898 33 H 0.083 0.917 34 H 0.115 0.885 35 H 0.077 0.923 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.604 -4.529 12.998 13.777 hybrid contribution -0.132 0.003 -0.711 0.723 sum 0.472 -4.525 12.287 13.102 Atomic orbital electron populations 1.69952 1.07173 1.27161 1.48964 1.25416 0.95167 1.01378 0.93920 0.85833 0.79258 0.80302 0.77851 1.20495 1.20929 1.19766 1.20579 0.97271 0.92153 1.43792 0.93641 1.19018 0.95971 0.87880 0.93590 1.21536 0.94106 0.99463 0.87766 1.60491 1.20272 1.47861 1.00696 1.22748 0.94202 0.97176 0.89219 0.93091 1.22912 1.00624 0.96333 0.96904 1.22597 1.00779 0.96319 0.95292 1.22639 0.97023 0.95680 0.94822 1.22801 0.96956 0.94874 1.01328 1.22802 0.97316 0.96182 1.01108 1.22599 0.93868 0.96571 1.02248 1.22974 0.98362 1.07625 0.95875 1.22791 0.95447 1.02227 1.02066 0.93004 0.99614 0.89019 0.85056 0.91582 0.93138 0.89037 0.90099 0.92328 0.88014 0.89798 0.91688 0.88494 0.92309 0.91043 0.91427 0.90562 0.89759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -50.97 11.05 21.45 0.24 -50.74 16 2 C 0.04 2.33 5.07 84.66 0.43 2.76 16 3 Si 0.94 44.45 29.59 68.60 2.03 46.48 16 4 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 5 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 6 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 7 C -0.50 -28.04 8.99 25.60 0.23 -27.81 16 8 H 0.05 2.57 7.90 -2.91 -0.02 2.55 16 9 C 0.04 1.82 1.92 -52.93 -0.10 1.72 16 10 C 0.10 4.81 5.25 86.30 0.45 5.26 16 11 N -0.66 -27.38 5.95 -490.03 -2.92 -30.30 16 12 C 0.08 2.68 3.95 45.21 0.18 2.86 16 13 H 0.05 1.85 7.91 -2.39 -0.02 1.83 16 14 C -0.13 -4.38 7.89 31.23 0.25 -4.14 16 15 C -0.11 -2.82 7.84 30.88 0.24 -2.58 16 16 C -0.10 -2.71 1.04 -52.31 -0.05 -2.76 16 17 C -0.12 -2.69 7.84 30.88 0.24 -2.44 16 18 C -0.14 -3.09 7.80 31.23 0.24 -2.85 16 19 C -0.12 -2.94 7.26 30.89 0.22 -2.72 16 20 C -0.21 -9.78 9.88 30.59 0.30 -9.48 16 21 C -0.19 -8.09 9.51 30.59 0.29 -7.80 16 22 H 0.26 14.18 8.32 -92.70 -0.77 13.41 16 23 H -0.01 -0.66 7.91 -2.39 -0.02 -0.68 16 24 H 0.09 5.04 5.39 -2.38 -0.01 5.03 16 25 H 0.33 12.80 6.14 -89.70 -0.55 12.25 16 26 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 27 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.09 2.02 8.14 -2.38 -0.02 2.00 16 29 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 31 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 33 H 0.06 1.65 7.25 -2.39 -0.02 1.63 16 34 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.06 1.82 7.35 -2.39 -0.02 1.80 16 36 H 0.07 3.13 8.09 -2.39 -0.02 3.11 16 37 H 0.07 3.23 8.14 -2.39 -0.02 3.21 16 38 H 0.08 3.24 8.14 -2.38 -0.02 3.22 16 39 H 0.08 3.21 8.08 -2.39 -0.02 3.19 16 Total: -1.00 -58.76 307.91 2.73 -56.02 By element: Atomic # 1 Polarization: 28.06 SS G_CDS: 0.46 Total: 28.51 kcal Atomic # 6 Polarization: -52.91 SS G_CDS: 2.93 Total: -49.98 kcal Atomic # 7 Polarization: -78.36 SS G_CDS: -2.68 Total: -81.03 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -58.76 2.73 -56.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336657080.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.292 kcal (2) G-P(sol) polarization free energy of solvation -58.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds