Wall clock time and date at job start Sun Mar 29 2020 22:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46761 * 2 1 4 4 H 1.08994 * 109.47130 * 54.82374 * 3 2 1 5 5 C 1.50695 * 109.46878 * 174.82208 * 3 2 1 6 6 H 1.08002 * 120.00310 * 119.99908 * 5 3 2 7 7 C 1.37879 * 120.00339 * 299.99533 * 5 3 2 8 8 N 1.31516 * 120.00520 * 179.97438 * 7 5 3 9 9 Si 1.86797 * 119.99881 * 0.02562 * 7 5 3 10 10 H 1.48499 * 109.47528 * 89.99585 * 9 7 5 11 11 H 1.48496 * 109.47459 * 209.99820 * 9 7 5 12 12 H 1.48510 * 109.46974 * 329.99617 * 9 7 5 13 13 N 1.46902 * 109.47101 * 294.82077 * 3 2 1 14 14 C 1.46897 * 111.00050 * 153.56019 * 13 3 2 15 15 C 1.50698 * 109.47336 * 176.59738 * 14 13 3 16 16 C 1.38598 * 120.79529 * 269.72415 * 15 14 13 17 17 N 1.32334 * 119.10124 * 179.71782 * 16 15 14 18 18 C 1.31794 * 120.81546 * 0.56400 * 17 16 15 19 19 C 1.50707 * 119.11856 * 179.72948 * 18 17 16 20 20 N 1.31787 * 121.75774 * 359.70267 * 18 17 16 21 21 C 1.32330 * 120.82051 * 0.02562 * 20 18 17 22 22 H 1.08996 * 109.47171 * 66.08898 * 1 2 3 23 23 H 1.09008 * 109.46716 * 186.08605 * 1 2 3 24 24 H 1.09003 * 109.47291 * 306.07998 * 1 2 3 25 25 H 1.08996 * 109.47296 * 239.99737 * 2 1 3 26 26 H 1.08999 * 109.47162 * 119.99679 * 2 1 3 27 27 H 0.96998 * 120.00431 * 179.97438 * 8 7 5 28 28 H 1.00902 * 110.99978 * 29.60466 * 13 3 2 29 29 H 1.09000 * 109.46952 * 56.59080 * 14 13 3 30 30 H 1.09006 * 109.46913 * 296.59776 * 14 13 3 31 31 H 1.07999 * 120.45053 * 359.97438 * 16 15 14 32 32 H 1.09003 * 109.47056 * 269.96981 * 19 18 17 33 33 H 1.08997 * 109.47527 * 29.97767 * 19 18 17 34 34 H 1.08998 * 109.46948 * 149.97927 * 19 18 17 35 35 H 1.08003 * 120.45538 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6028 1.9824 0.8399 5 6 3.5414 1.4445 0.1282 6 1 4.1490 1.8883 -0.6466 7 6 4.1396 0.8799 1.2347 8 7 5.4500 0.8811 1.3464 9 14 3.0889 0.1118 2.5746 10 1 2.8689 -1.3247 2.2689 11 1 3.7823 0.2391 3.8816 12 1 1.7799 0.8103 2.6387 13 7 1.6549 2.0980 -1.2571 14 6 1.5423 3.5519 -1.0797 15 6 1.2288 4.1969 -2.4051 16 6 2.2456 4.6226 -3.2453 17 7 1.9322 5.1796 -4.4040 18 6 0.6726 5.3411 -4.7568 19 6 0.3592 5.9856 -6.0826 20 7 -0.3200 4.9535 -3.9814 21 6 -0.0833 4.3840 -2.8107 22 1 -0.3633 0.4165 -0.9394 23 1 -0.3633 -1.0220 0.1090 24 1 -0.3634 0.6052 0.8306 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 5.8708 0.4842 2.1250 28 1 0.7966 1.7103 -1.6189 29 1 2.4843 3.9454 -0.6979 30 1 0.7434 3.7706 -0.3712 31 1 3.2797 4.4977 -2.9600 32 1 0.2753 7.0644 -5.9513 33 1 1.1582 5.7668 -6.7909 34 1 -0.5827 5.5917 -6.4644 35 1 -0.9013 4.0683 -2.1801 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336745973.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:47 Heat of formation + Delta-G solvation = 45.045490 kcal Electronic energy + Delta-G solvation = -16252.527000 eV Core-core repulsion = 13671.600680 eV Total energy + Delta-G solvation = -2580.926320 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.91493 -36.94060 -34.11861 -33.55158 -32.15104 -31.38216 -28.81923 -27.04347 -24.51093 -24.28911 -22.55781 -21.42426 -19.95686 -17.59959 -16.78787 -16.59126 -15.45980 -15.15291 -14.87059 -14.11237 -13.71214 -13.46015 -13.14663 -13.11711 -12.70255 -12.53244 -12.40345 -12.39248 -11.86455 -11.67447 -11.22990 -10.81134 -10.66187 -10.43152 -10.34231 -10.05850 -9.50643 -9.34503 -9.07113 -9.04364 -8.57174 -7.52389 -6.08942 -4.06717 1.02522 1.23401 3.21897 3.31576 3.34611 3.84113 4.04916 4.27131 4.35847 4.80909 4.89298 5.08943 5.17804 5.25497 5.40341 5.47006 5.48606 5.66687 5.75477 5.82405 5.88873 5.90333 6.14372 6.28728 6.40195 6.52655 6.57259 6.63630 6.71738 7.07272 7.11339 7.64389 7.81768 8.12228 8.21088 8.67107 9.02414 9.53495 11.04269 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.038973 B = 0.005793 C = 0.005261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.266060 B = 4831.879414 C = 5320.872116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.136 4.136 3 C 0.190 3.810 4 H 0.004 0.996 5 C -0.499 4.499 6 H 0.082 0.918 7 C 0.068 3.932 8 N -0.899 5.899 9 Si 0.882 3.118 10 H -0.279 1.279 11 H -0.297 1.297 12 H -0.268 1.268 13 N -0.670 5.670 14 C 0.110 3.890 15 C -0.175 4.175 16 C 0.171 3.829 17 N -0.521 5.521 18 C 0.299 3.701 19 C -0.081 4.081 20 N -0.524 5.524 21 C 0.147 3.853 22 H 0.049 0.951 23 H 0.046 0.954 24 H 0.046 0.954 25 H 0.069 0.931 26 H 0.055 0.945 27 H 0.263 0.737 28 H 0.320 0.680 29 H 0.094 0.906 30 H 0.032 0.968 31 H 0.173 0.827 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.334 6.250 -7.435 14.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.174 4.174 3 C 0.082 3.918 4 H 0.021 0.979 5 C -0.537 4.537 6 H 0.100 0.900 7 C -0.134 4.134 8 N -0.538 5.538 9 Si 0.712 3.288 10 H -0.206 1.206 11 H -0.224 1.224 12 H -0.193 1.193 13 N -0.301 5.301 14 C -0.020 4.020 15 C -0.180 4.180 16 C 0.005 3.995 17 N -0.235 5.235 18 C 0.031 3.969 19 C -0.140 4.140 20 N -0.238 5.238 21 C -0.020 4.020 22 H 0.068 0.932 23 H 0.065 0.935 24 H 0.065 0.935 25 H 0.087 0.913 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.137 0.863 29 H 0.112 0.888 30 H 0.050 0.950 31 H 0.190 0.810 32 H 0.100 0.900 33 H 0.102 0.898 34 H 0.100 0.900 35 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -10.733 6.650 -8.433 15.183 hybrid contribution -1.059 -1.005 2.278 2.706 sum -11.792 5.645 -6.154 14.450 Atomic orbital electron populations 1.21920 0.98155 1.00721 1.00693 1.22131 0.92979 1.00338 1.01956 1.19656 0.97051 0.89301 0.85806 0.97892 1.21011 0.88912 1.37710 1.06106 0.90041 1.24957 0.94751 0.95907 0.97758 1.69878 1.08675 1.45609 1.29604 0.86953 0.80631 0.79845 0.81340 1.20567 1.22447 1.19324 1.60554 1.36696 1.00951 1.31888 1.20709 1.01756 0.89903 0.89636 1.21823 0.95156 1.00778 1.00204 1.23263 1.00772 0.88183 0.87274 1.68288 1.21660 1.15716 1.17823 1.23175 0.84468 0.92904 0.96318 1.20499 1.03057 1.00199 0.90218 1.68198 1.37423 1.12654 1.05498 1.23095 0.95824 0.91318 0.91723 0.93197 0.93515 0.93507 0.91270 0.92674 0.92652 0.86273 0.88774 0.94982 0.81017 0.90032 0.89830 0.89980 0.82067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.56 9.63 37.16 0.36 -2.20 16 2 C -0.14 -2.79 5.01 -26.73 -0.13 -2.93 16 3 C 0.19 4.21 1.62 -68.86 -0.11 4.10 16 4 H 0.00 0.08 6.88 -51.93 -0.36 -0.28 16 5 C -0.50 -13.48 9.21 -34.44 -0.32 -13.80 16 6 H 0.08 2.43 8.06 -52.49 -0.42 2.01 16 7 C 0.07 1.90 5.45 -17.82 -0.10 1.80 16 8 N -0.90 -26.97 13.96 55.43 0.77 -26.19 16 9 Si 0.88 21.26 24.41 -169.99 -4.15 17.11 16 10 H -0.28 -6.57 6.83 56.52 0.39 -6.19 16 11 H -0.30 -7.24 7.11 56.52 0.40 -6.83 16 12 H -0.27 -6.15 6.53 56.52 0.37 -5.78 16 13 N -0.67 -12.68 6.27 -109.22 -0.68 -13.37 16 14 C 0.11 1.82 5.63 -4.98 -0.03 1.79 16 15 C -0.18 -2.62 5.46 -104.36 -0.57 -3.19 16 16 C 0.17 2.64 11.01 -17.20 -0.19 2.45 16 17 N -0.52 -8.06 10.33 -10.72 -0.11 -8.17 16 18 C 0.30 4.25 7.64 -157.20 -1.20 3.05 16 19 C -0.08 -0.82 10.32 36.01 0.37 -0.45 16 20 N -0.52 -7.62 10.33 -10.72 -0.11 -7.73 16 21 C 0.15 2.02 11.01 -17.20 -0.19 1.84 16 22 H 0.05 0.71 6.65 -51.93 -0.35 0.37 16 23 H 0.05 0.68 8.14 -51.92 -0.42 0.26 16 24 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 26 H 0.06 1.22 3.21 -51.93 -0.17 1.06 16 27 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 28 H 0.32 5.41 6.59 -39.29 -0.26 5.16 16 29 H 0.09 1.70 7.96 -51.93 -0.41 1.29 16 30 H 0.03 0.49 8.08 -51.93 -0.42 0.07 16 31 H 0.17 2.52 8.06 -52.49 -0.42 2.09 16 32 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.16 1.80 8.06 -52.48 -0.42 1.38 16 LS Contribution 288.47 15.07 4.35 4.35 Total: -1.00 -30.56 288.47 -6.99 -37.56 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -4.95 Total: 3.99 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: -2.11 Total: -7.53 kcal Atomic # 7 Polarization: -55.33 SS G_CDS: -0.13 Total: -55.47 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.15 Total: 17.11 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -30.56 -6.99 -37.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336745973.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.602 kcal (2) G-P(sol) polarization free energy of solvation -30.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds