Wall clock time and date at job start Sun Mar 29 2020 22:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46761 * 2 1 4 4 H 1.08994 * 109.47130 * 54.82374 * 3 2 1 5 5 C 1.50695 * 109.46878 * 174.82208 * 3 2 1 6 6 H 1.08002 * 120.00310 * 119.99908 * 5 3 2 7 7 C 1.37879 * 120.00339 * 299.99533 * 5 3 2 8 8 N 1.31516 * 120.00520 * 179.97438 * 7 5 3 9 9 Si 1.86797 * 119.99881 * 0.02562 * 7 5 3 10 10 H 1.48499 * 109.47528 * 89.99585 * 9 7 5 11 11 H 1.48496 * 109.47459 * 209.99820 * 9 7 5 12 12 H 1.48510 * 109.46974 * 329.99617 * 9 7 5 13 13 N 1.46902 * 109.47101 * 294.82077 * 3 2 1 14 14 C 1.46897 * 111.00050 * 153.56019 * 13 3 2 15 15 C 1.50698 * 109.47336 * 176.59738 * 14 13 3 16 16 C 1.38598 * 120.79529 * 269.72415 * 15 14 13 17 17 N 1.32334 * 119.10124 * 179.71782 * 16 15 14 18 18 C 1.31794 * 120.81546 * 0.56400 * 17 16 15 19 19 C 1.50707 * 119.11856 * 179.72948 * 18 17 16 20 20 N 1.31787 * 121.75774 * 359.70267 * 18 17 16 21 21 C 1.32330 * 120.82051 * 0.02562 * 20 18 17 22 22 H 1.08996 * 109.47171 * 66.08898 * 1 2 3 23 23 H 1.09008 * 109.46716 * 186.08605 * 1 2 3 24 24 H 1.09003 * 109.47291 * 306.07998 * 1 2 3 25 25 H 1.08996 * 109.47296 * 239.99737 * 2 1 3 26 26 H 1.08999 * 109.47162 * 119.99679 * 2 1 3 27 27 H 0.96998 * 120.00431 * 179.97438 * 8 7 5 28 28 H 1.00902 * 110.99978 * 29.60466 * 13 3 2 29 29 H 1.09000 * 109.46952 * 56.59080 * 14 13 3 30 30 H 1.09006 * 109.46913 * 296.59776 * 14 13 3 31 31 H 1.07999 * 120.45053 * 359.97438 * 16 15 14 32 32 H 1.09003 * 109.47056 * 269.96981 * 19 18 17 33 33 H 1.08997 * 109.47527 * 29.97767 * 19 18 17 34 34 H 1.08998 * 109.46948 * 149.97927 * 19 18 17 35 35 H 1.08003 * 120.45538 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6028 1.9824 0.8399 5 6 3.5414 1.4445 0.1282 6 1 4.1490 1.8883 -0.6466 7 6 4.1396 0.8799 1.2347 8 7 5.4500 0.8811 1.3464 9 14 3.0889 0.1118 2.5746 10 1 2.8689 -1.3247 2.2689 11 1 3.7823 0.2391 3.8816 12 1 1.7799 0.8103 2.6387 13 7 1.6549 2.0980 -1.2571 14 6 1.5423 3.5519 -1.0797 15 6 1.2288 4.1969 -2.4051 16 6 2.2456 4.6226 -3.2453 17 7 1.9322 5.1796 -4.4040 18 6 0.6726 5.3411 -4.7568 19 6 0.3592 5.9856 -6.0826 20 7 -0.3200 4.9535 -3.9814 21 6 -0.0833 4.3840 -2.8107 22 1 -0.3633 0.4165 -0.9394 23 1 -0.3633 -1.0220 0.1090 24 1 -0.3634 0.6052 0.8306 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 5.8708 0.4842 2.1250 28 1 0.7966 1.7103 -1.6189 29 1 2.4843 3.9454 -0.6979 30 1 0.7434 3.7706 -0.3712 31 1 3.2797 4.4977 -2.9600 32 1 0.2753 7.0644 -5.9513 33 1 1.1582 5.7668 -6.7909 34 1 -0.5827 5.5917 -6.4644 35 1 -0.9013 4.0683 -2.1801 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336745973.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:47 Heat of formation + Delta-G solvation = 23.115361 kcal Electronic energy + Delta-G solvation = -16253.477962 eV Core-core repulsion = 13671.600680 eV Total energy + Delta-G solvation = -2581.877282 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.04050 -38.52278 -35.47085 -34.68364 -34.12466 -32.65462 -30.04223 -28.72715 -25.68156 -25.59688 -24.14995 -22.64119 -21.70198 -18.91890 -18.62198 -17.68076 -17.05919 -16.58886 -16.19992 -15.78139 -15.09095 -14.88217 -14.56534 -14.19745 -14.15529 -13.89248 -13.59828 -13.34062 -13.22046 -13.09241 -12.84573 -12.46273 -12.21135 -11.86771 -11.80667 -11.60244 -11.28057 -11.18991 -10.68182 -10.23667 -10.21513 -9.07438 -8.24995 -6.26952 -0.10556 0.09077 1.31529 1.36108 1.46202 2.33582 2.70676 3.06024 3.08532 3.19765 3.53108 3.70775 3.87425 3.97396 4.29499 4.32766 4.35636 4.45761 4.58076 4.72173 4.73839 4.82450 4.88111 5.03359 5.05706 5.11640 5.14969 5.22529 5.44202 5.50314 5.72884 5.96495 6.06294 6.46937 6.80152 6.90978 7.09283 7.37806 8.92205 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.038973 B = 0.005793 C = 0.005261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.266060 B = 4831.879414 C = 5320.872116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.137 4.137 3 C 0.196 3.804 4 H 0.004 0.996 5 C -0.499 4.499 6 H 0.034 0.966 7 C 0.008 3.992 8 N -0.952 5.952 9 Si 0.947 3.053 10 H -0.268 1.268 11 H -0.303 1.303 12 H -0.243 1.243 13 N -0.680 5.680 14 C 0.118 3.882 15 C -0.182 4.182 16 C 0.158 3.842 17 N -0.539 5.539 18 C 0.292 3.708 19 C -0.080 4.080 20 N -0.531 5.531 21 C 0.156 3.844 22 H 0.070 0.930 23 H 0.066 0.934 24 H 0.053 0.947 25 H 0.059 0.941 26 H 0.040 0.960 27 H 0.263 0.737 28 H 0.336 0.664 29 H 0.067 0.933 30 H 0.055 0.945 31 H 0.166 0.834 32 H 0.098 0.902 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.705 6.142 -7.576 17.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.175 4.175 3 C 0.087 3.913 4 H 0.022 0.978 5 C -0.538 4.538 6 H 0.052 0.948 7 C -0.189 4.189 8 N -0.594 5.594 9 Si 0.774 3.226 10 H -0.195 1.195 11 H -0.231 1.231 12 H -0.167 1.167 13 N -0.313 5.313 14 C -0.012 4.012 15 C -0.187 4.187 16 C -0.008 4.008 17 N -0.253 5.253 18 C 0.025 3.975 19 C -0.138 4.138 20 N -0.246 5.246 21 C -0.010 4.010 22 H 0.089 0.911 23 H 0.085 0.915 24 H 0.072 0.928 25 H 0.078 0.922 26 H 0.058 0.942 27 H 0.072 0.928 28 H 0.156 0.844 29 H 0.085 0.915 30 H 0.073 0.927 31 H 0.183 0.817 32 H 0.117 0.883 33 H 0.108 0.892 34 H 0.114 0.886 35 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -14.136 6.553 -8.605 17.800 hybrid contribution 0.037 -0.882 2.182 2.354 sum -14.099 5.671 -6.423 16.498 Atomic orbital electron populations 1.21849 0.94205 1.02466 1.02169 1.22024 0.96482 0.98205 1.00792 1.19422 0.93597 0.91068 0.87198 0.97823 1.21317 0.91704 1.36228 1.04572 0.94752 1.25811 0.95819 0.96732 1.00511 1.70051 1.10932 1.47656 1.30714 0.85882 0.79657 0.79509 0.77507 1.19478 1.23072 1.16698 1.60323 1.38068 1.02361 1.30507 1.20571 1.01220 0.88365 0.91049 1.21611 0.95783 1.01759 0.99503 1.23304 1.00971 0.88660 0.87847 1.68344 1.22643 1.16512 1.17845 1.23984 0.84005 0.92059 0.97482 1.20652 1.03956 1.00930 0.88249 1.68339 1.37315 1.13097 1.05801 1.23549 0.95906 0.89882 0.91662 0.91142 0.91529 0.92810 0.92184 0.94222 0.92757 0.84418 0.91479 0.92693 0.81719 0.88336 0.89157 0.88554 0.78985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.20 9.63 71.98 0.69 -3.51 16 2 C -0.14 -5.31 5.01 30.60 0.15 -5.16 16 3 C 0.20 8.48 1.62 44.17 0.07 8.55 16 4 H 0.00 0.18 6.88 -2.39 -0.02 0.17 16 5 C -0.50 -27.77 9.21 25.60 0.24 -27.53 16 6 H 0.03 2.17 8.06 -2.91 -0.02 2.15 16 7 C 0.01 0.44 5.45 84.65 0.46 0.90 16 8 N -0.95 -59.37 13.96 21.45 0.30 -59.07 16 9 Si 0.95 43.75 24.41 68.60 1.67 45.43 16 10 H -0.27 -11.88 6.83 99.48 0.68 -11.20 16 11 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 12 H -0.24 -10.16 6.53 99.48 0.65 -9.51 16 13 N -0.68 -24.99 6.27 -499.47 -3.13 -28.12 16 14 C 0.12 3.79 5.63 85.56 0.48 4.27 16 15 C -0.18 -5.25 5.46 -19.69 -0.11 -5.36 16 16 C 0.16 4.91 11.01 84.70 0.93 5.84 16 17 N -0.54 -16.40 10.33 -187.84 -1.94 -18.35 16 18 C 0.29 7.80 7.64 138.75 1.06 8.86 16 19 C -0.08 -1.42 10.32 71.24 0.74 -0.68 16 20 N -0.53 -14.15 10.33 -187.84 -1.94 -16.09 16 21 C 0.16 3.90 11.01 84.70 0.93 4.84 16 22 H 0.07 1.68 6.65 -2.39 -0.02 1.67 16 23 H 0.07 1.63 8.14 -2.38 -0.02 1.62 16 24 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 26 H 0.04 1.66 3.21 -2.39 -0.01 1.65 16 27 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 28 H 0.34 10.46 6.59 -89.69 -0.59 9.87 16 29 H 0.07 2.50 7.96 -2.39 -0.02 2.48 16 30 H 0.06 1.53 8.08 -2.38 -0.02 1.51 16 31 H 0.17 5.15 8.06 -2.91 -0.02 5.13 16 32 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.19 3.49 8.06 -2.91 -0.02 3.46 16 Total: -1.00 -67.82 288.47 1.02 -66.80 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: 0.41 Total: 18.38 kcal Atomic # 6 Polarization: -14.62 SS G_CDS: 5.65 Total: -8.97 kcal Atomic # 7 Polarization: -114.91 SS G_CDS: -6.71 Total: -121.63 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 1.67 Total: 45.43 kcal Total: -67.82 1.02 -66.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336745973.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.912 kcal (2) G-P(sol) polarization free energy of solvation -67.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds