Wall clock time and date at job start Sun Mar 29 2020 22:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47052 * 2 1 4 4 C 1.52994 * 109.46969 * 240.00116 * 2 1 3 5 5 C 1.50698 * 109.47366 * 59.99876 * 4 2 1 6 6 H 1.07996 * 119.99914 * 0.02562 * 5 4 2 7 7 C 1.37874 * 120.00135 * 179.97438 * 5 4 2 8 8 N 1.31516 * 120.00452 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99943 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47403 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47085 * 120.00358 * 9 7 5 12 12 H 1.48508 * 109.46920 * 239.99938 * 9 7 5 13 13 C 1.53001 * 109.46836 * 120.00087 * 2 1 3 14 14 N 1.46498 * 109.47425 * 299.99614 * 13 2 1 15 15 C 1.38405 * 120.00241 * 180.02562 * 14 13 2 16 16 N 1.32494 * 119.21430 * 359.45979 * 15 14 13 17 17 C 1.32277 * 120.73841 * 179.72095 * 16 15 14 18 18 C 1.38608 * 119.19678 * 0.53884 * 17 16 15 19 19 C 1.38606 * 118.55898 * 359.73449 * 18 17 16 20 20 N 1.32279 * 119.19607 * 359.97438 * 19 18 17 21 21 H 1.09003 * 109.47126 * 300.00066 * 1 2 3 22 22 H 1.08997 * 109.47538 * 59.99572 * 1 2 3 23 23 H 1.09001 * 109.47339 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46576 * 179.97438 * 3 2 1 25 25 H 1.08996 * 109.47041 * 300.00098 * 3 2 1 26 26 H 1.09003 * 109.47209 * 59.99985 * 3 2 1 27 27 H 1.08998 * 109.47353 * 180.02562 * 4 2 1 28 28 H 1.09006 * 109.47395 * 299.99864 * 4 2 1 29 29 H 0.96993 * 120.00440 * 179.97438 * 8 7 5 30 30 H 1.09007 * 109.46593 * 179.97438 * 13 2 1 31 31 H 1.09001 * 109.47217 * 59.99851 * 13 2 1 32 32 H 0.97005 * 119.99891 * 359.72855 * 14 13 2 33 33 H 1.08000 * 120.40224 * 180.29765 * 17 16 15 34 34 H 1.07992 * 120.71909 * 179.75623 * 18 17 16 35 35 H 1.07994 * 120.40358 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2492 5 6 1.5376 -0.0108 -2.4797 6 1 0.9170 0.8675 -2.3806 7 6 1.8711 -0.4816 -3.7319 8 7 2.6272 -1.5509 -3.8527 9 14 1.2490 0.3994 -5.2571 10 1 0.4244 1.5664 -4.8530 11 1 2.4043 0.8662 -6.0650 12 1 0.4242 -0.5338 -6.0660 13 6 2.0399 -0.7213 1.2493 14 7 1.5517 -0.0307 2.4454 15 6 1.8864 -0.5033 3.7025 16 7 2.6404 -1.5878 3.8060 17 6 2.9830 -2.0624 4.9922 18 6 2.5340 -1.4174 6.1339 19 6 1.7424 -0.2888 5.9895 20 7 1.4412 0.1368 4.7738 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0277 -0.0005 24 1 3.1300 1.4424 0.0005 25 1 1.6766 1.9563 -0.8899 26 1 1.6766 1.9564 0.8900 27 1 3.1299 -0.7216 -1.2491 28 1 1.6766 -1.7489 -1.2493 29 1 2.8615 -1.8822 -4.7336 30 1 3.1300 -0.7217 1.2490 31 1 1.6766 -1.7489 1.2493 32 1 0.9973 0.7603 2.3565 33 1 3.6018 -2.9441 5.0702 34 1 2.7955 -1.7860 7.1147 35 1 1.3765 0.2371 6.8588 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336749186.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:41 Heat of formation + Delta-G solvation = 38.446608 kcal Electronic energy + Delta-G solvation = -16259.646784 eV Core-core repulsion = 13678.434315 eV Total energy + Delta-G solvation = -2581.212469 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.73465 -37.73830 -34.49492 -33.50248 -32.32410 -30.26253 -27.05435 -26.48296 -26.10994 -24.32551 -23.35676 -22.11124 -18.56250 -17.67211 -17.06158 -16.27027 -15.65457 -15.14572 -14.61858 -14.48190 -14.07419 -13.84618 -13.32589 -13.02321 -12.74191 -12.38447 -12.05993 -11.25878 -11.02010 -10.88363 -10.79592 -10.73029 -10.64789 -10.39200 -10.25262 -10.22443 -9.77825 -9.21988 -8.97656 -8.90768 -8.35766 -7.84482 -5.99815 -4.00783 1.27746 1.32050 3.15838 3.30632 3.38808 3.41716 4.05044 4.32000 4.45913 4.69604 4.96888 5.27390 5.30561 5.36003 5.51546 5.64583 5.76847 5.85899 6.20434 6.21579 6.26634 6.40204 6.42512 6.65644 6.67823 6.96012 7.08146 7.08997 7.13467 7.32007 7.64324 7.69757 7.76667 7.99276 8.41343 8.51581 9.04174 9.62437 11.11735 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.058581 B = 0.004810 C = 0.004588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.854482 B = 5819.764662 C = 6101.254339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.073 4.073 3 C -0.128 4.128 4 C 0.037 3.963 5 C -0.510 4.510 6 H 0.060 0.940 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.888 3.112 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.144 3.856 14 N -0.685 5.685 15 C 0.564 3.436 16 N -0.566 5.566 17 C 0.193 3.807 18 C -0.309 4.309 19 C 0.191 3.809 20 N -0.580 5.580 21 H 0.029 0.971 22 H 0.067 0.933 23 H 0.047 0.953 24 H 0.047 0.953 25 H 0.067 0.933 26 H 0.029 0.971 27 H 0.019 0.981 28 H 0.019 0.981 29 H 0.259 0.741 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.412 0.588 33 H 0.163 0.837 34 H 0.138 0.862 35 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.942 1.364 17.028 17.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.074 4.074 3 C -0.185 4.185 4 C -0.001 4.001 5 C -0.548 4.548 6 H 0.078 0.922 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.716 3.284 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.021 3.979 14 N -0.320 5.320 15 C 0.207 3.793 16 N -0.290 5.290 17 C 0.024 3.976 18 C -0.336 4.336 19 C 0.022 3.978 20 N -0.303 5.303 21 H 0.048 0.952 22 H 0.086 0.914 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.086 0.914 26 H 0.048 0.952 27 H 0.037 0.963 28 H 0.037 0.963 29 H 0.069 0.931 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.250 0.750 33 H 0.180 0.820 34 H 0.156 0.844 35 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -1.058 1.511 15.733 15.840 hybrid contribution -0.208 0.309 -0.024 0.374 sum -1.266 1.820 15.708 15.864 Atomic orbital electron populations 1.21763 0.95255 1.01150 1.00317 1.20934 0.95543 0.95922 0.94975 1.21765 1.00489 0.95918 1.00319 1.19085 0.96351 0.95216 0.89398 1.21227 1.31063 1.12046 0.90505 0.92191 1.25006 0.95312 0.95084 0.99074 1.69971 1.37061 1.23092 1.23315 0.86597 0.78613 0.79707 0.83441 1.19787 1.21132 1.21125 1.21627 0.98722 0.95729 0.81827 1.44621 1.54502 1.31910 1.01014 1.19502 0.86854 0.86048 0.86855 1.68026 1.18261 1.14284 1.28394 1.22927 0.91717 0.96223 0.86733 1.22417 1.08152 1.02051 1.00991 1.22831 0.89640 0.91440 0.93891 1.67930 1.28724 1.34775 0.98847 0.95171 0.91409 0.93385 0.93389 0.91396 0.95181 0.96306 0.96303 0.93111 0.91849 0.91801 0.74951 0.82003 0.84399 0.82133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.34 8.05 37.16 0.30 -2.04 16 2 C -0.07 -1.42 0.54 -154.51 -0.08 -1.51 16 3 C -0.13 -2.34 8.05 37.16 0.30 -2.04 16 4 C 0.04 0.91 4.04 -27.89 -0.11 0.80 16 5 C -0.51 -13.62 7.65 -34.44 -0.26 -13.89 16 6 H 0.06 1.55 5.68 -52.49 -0.30 1.25 16 7 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.89 -26.41 13.29 55.43 0.74 -25.67 16 9 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 10 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 13 C 0.14 2.59 4.54 -4.04 -0.02 2.57 16 14 N -0.69 -11.15 5.11 -62.31 -0.32 -11.46 16 15 C 0.56 9.17 8.43 -322.81 -2.72 6.45 16 16 N -0.57 -8.95 9.59 -13.93 -0.13 -9.08 16 17 C 0.19 2.29 11.30 -17.22 -0.19 2.10 16 18 C -0.31 -3.09 10.16 -39.31 -0.40 -3.49 16 19 C 0.19 2.13 11.30 -17.22 -0.19 1.94 16 20 N -0.58 -8.56 10.46 -13.93 -0.15 -8.71 16 21 H 0.03 0.47 6.87 -51.93 -0.36 0.12 16 22 H 0.07 1.32 6.62 -51.93 -0.34 0.98 16 23 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 24 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.07 1.32 6.62 -51.93 -0.34 0.98 16 26 H 0.03 0.47 6.86 -51.93 -0.36 0.11 16 27 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 30 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.41 6.32 6.28 -40.82 -0.26 6.07 16 33 H 0.16 1.38 8.06 -52.49 -0.42 0.95 16 34 H 0.14 0.92 8.06 -52.49 -0.42 0.49 16 35 H 0.16 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 289.05 15.07 4.36 4.36 Total: -1.00 -30.57 289.05 -8.91 -39.48 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -4.89 Total: 2.46 kcal Atomic # 6 Polarization: -4.15 SS G_CDS: -3.49 Total: -7.63 kcal Atomic # 7 Polarization: -55.06 SS G_CDS: 0.14 Total: -54.92 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -30.57 -8.91 -39.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336749186.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.922 kcal (2) G-P(sol) polarization free energy of solvation -30.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds