Wall clock time and date at job start Sun Mar 29 2020 22:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47052 * 2 1 4 4 C 1.52994 * 109.46969 * 240.00116 * 2 1 3 5 5 C 1.50698 * 109.47366 * 59.99876 * 4 2 1 6 6 H 1.07996 * 119.99914 * 0.02562 * 5 4 2 7 7 C 1.37874 * 120.00135 * 179.97438 * 5 4 2 8 8 N 1.31516 * 120.00452 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99943 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47403 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47085 * 120.00358 * 9 7 5 12 12 H 1.48508 * 109.46920 * 239.99938 * 9 7 5 13 13 C 1.53001 * 109.46836 * 120.00087 * 2 1 3 14 14 N 1.46498 * 109.47425 * 299.99614 * 13 2 1 15 15 C 1.38405 * 120.00241 * 180.02562 * 14 13 2 16 16 N 1.32494 * 119.21430 * 359.45979 * 15 14 13 17 17 C 1.32277 * 120.73841 * 179.72095 * 16 15 14 18 18 C 1.38608 * 119.19678 * 0.53884 * 17 16 15 19 19 C 1.38606 * 118.55898 * 359.73449 * 18 17 16 20 20 N 1.32279 * 119.19607 * 359.97438 * 19 18 17 21 21 H 1.09003 * 109.47126 * 300.00066 * 1 2 3 22 22 H 1.08997 * 109.47538 * 59.99572 * 1 2 3 23 23 H 1.09001 * 109.47339 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46576 * 179.97438 * 3 2 1 25 25 H 1.08996 * 109.47041 * 300.00098 * 3 2 1 26 26 H 1.09003 * 109.47209 * 59.99985 * 3 2 1 27 27 H 1.08998 * 109.47353 * 180.02562 * 4 2 1 28 28 H 1.09006 * 109.47395 * 299.99864 * 4 2 1 29 29 H 0.96993 * 120.00440 * 179.97438 * 8 7 5 30 30 H 1.09007 * 109.46593 * 179.97438 * 13 2 1 31 31 H 1.09001 * 109.47217 * 59.99851 * 13 2 1 32 32 H 0.97005 * 119.99891 * 359.72855 * 14 13 2 33 33 H 1.08000 * 120.40224 * 180.29765 * 17 16 15 34 34 H 1.07992 * 120.71909 * 179.75623 * 18 17 16 35 35 H 1.07994 * 120.40358 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2492 5 6 1.5376 -0.0108 -2.4797 6 1 0.9170 0.8675 -2.3806 7 6 1.8711 -0.4816 -3.7319 8 7 2.6272 -1.5509 -3.8527 9 14 1.2490 0.3994 -5.2571 10 1 0.4244 1.5664 -4.8530 11 1 2.4043 0.8662 -6.0650 12 1 0.4242 -0.5338 -6.0660 13 6 2.0399 -0.7213 1.2493 14 7 1.5517 -0.0307 2.4454 15 6 1.8864 -0.5033 3.7025 16 7 2.6404 -1.5878 3.8060 17 6 2.9830 -2.0624 4.9922 18 6 2.5340 -1.4174 6.1339 19 6 1.7424 -0.2888 5.9895 20 7 1.4412 0.1368 4.7738 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0277 -0.0005 24 1 3.1300 1.4424 0.0005 25 1 1.6766 1.9563 -0.8899 26 1 1.6766 1.9564 0.8900 27 1 3.1299 -0.7216 -1.2491 28 1 1.6766 -1.7489 -1.2493 29 1 2.8615 -1.8822 -4.7336 30 1 3.1300 -0.7217 1.2490 31 1 1.6766 -1.7489 1.2493 32 1 0.9973 0.7603 2.3565 33 1 3.6018 -2.9441 5.0702 34 1 2.7955 -1.7860 7.1147 35 1 1.3765 0.2371 6.8588 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336749186.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:40 Heat of formation + Delta-G solvation = 20.975715 kcal Electronic energy + Delta-G solvation = -16260.404379 eV Core-core repulsion = 13678.434315 eV Total energy + Delta-G solvation = -2581.970064 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.74879 -39.25109 -35.90989 -34.50852 -34.25964 -31.40447 -28.99196 -27.99728 -27.51495 -25.39198 -24.92848 -23.48971 -19.98353 -18.92016 -18.40239 -18.10584 -16.63134 -16.40385 -16.33620 -15.73750 -15.30715 -15.29986 -14.62409 -14.36537 -14.16588 -13.97344 -13.95285 -12.94072 -12.70366 -12.67831 -12.36435 -12.23485 -11.95779 -11.79200 -11.76840 -11.66566 -11.19929 -11.02353 -10.85476 -10.51370 -9.98886 -8.97508 -8.13847 -6.21227 0.34287 0.37341 1.41561 1.42850 1.54528 2.00030 2.44866 3.05320 3.20697 3.39681 3.85536 3.97241 4.00334 4.08657 4.22331 4.48239 4.56563 4.68523 4.73558 4.78730 4.94699 4.97892 5.09426 5.11569 5.38938 5.47432 5.48344 5.52032 5.57031 5.79062 5.88135 5.91249 6.23966 6.31896 6.59997 6.93493 7.45667 7.46853 8.98850 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.058581 B = 0.004810 C = 0.004588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.854482 B = 5819.764662 C = 6101.254339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.066 4.066 3 C -0.120 4.120 4 C 0.043 3.957 5 C -0.514 4.514 6 H 0.070 0.930 7 C -0.003 4.003 8 N -0.937 5.937 9 Si 0.957 3.043 10 H -0.259 1.259 11 H -0.283 1.283 12 H -0.283 1.283 13 C 0.167 3.833 14 N -0.689 5.689 15 C 0.542 3.458 16 N -0.603 5.603 17 C 0.174 3.826 18 C -0.286 4.286 19 C 0.179 3.821 20 N -0.596 5.596 21 H 0.060 0.940 22 H 0.056 0.944 23 H 0.038 0.962 24 H 0.038 0.962 25 H 0.056 0.944 26 H 0.060 0.940 27 H -0.011 1.011 28 H -0.011 1.011 29 H 0.260 0.740 30 H 0.047 0.953 31 H 0.048 0.952 32 H 0.415 0.585 33 H 0.191 0.809 34 H 0.180 0.820 35 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.700 2.444 19.141 19.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.067 4.067 3 C -0.178 4.178 4 C 0.005 3.995 5 C -0.553 4.553 6 H 0.088 0.912 7 C -0.200 4.200 8 N -0.578 5.578 9 Si 0.783 3.217 10 H -0.183 1.183 11 H -0.209 1.209 12 H -0.209 1.209 13 C 0.042 3.958 14 N -0.326 5.326 15 C 0.185 3.815 16 N -0.327 5.327 17 C 0.008 3.992 18 C -0.311 4.311 19 C 0.012 3.988 20 N -0.320 5.320 21 H 0.079 0.921 22 H 0.075 0.925 23 H 0.057 0.943 24 H 0.058 0.942 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.007 0.993 28 H 0.007 0.993 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.254 0.746 33 H 0.208 0.792 34 H 0.198 0.802 35 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -1.815 2.590 17.914 18.192 hybrid contribution 0.077 -0.098 -0.477 0.493 sum -1.738 2.492 17.438 17.700 Atomic orbital electron populations 1.21671 0.93978 1.00894 1.01201 1.20735 0.96453 0.96222 0.93248 1.21672 0.99934 0.94941 1.01207 1.18940 0.94408 0.94218 0.91903 1.21614 1.30407 1.12049 0.91186 0.91216 1.25905 0.95639 0.95858 1.02564 1.70114 1.38743 1.24906 1.24041 0.85513 0.78083 0.78812 0.79341 1.18309 1.20946 1.20935 1.21108 0.97530 0.94856 0.82268 1.44287 1.55458 1.32209 1.00693 1.19606 0.87959 0.86842 0.87059 1.68004 1.19136 1.14803 1.30758 1.23574 0.92021 0.97249 0.86366 1.22872 1.05587 1.00498 1.02147 1.23620 0.89357 0.92029 0.93752 1.67949 1.29213 1.35203 0.99637 0.92106 0.92543 0.94253 0.94246 0.92531 0.92107 0.99251 0.99253 0.93129 0.93438 0.93402 0.74580 0.79208 0.80232 0.78268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.36 8.05 71.98 0.58 -3.78 16 2 C -0.07 -2.61 0.54 -52.18 -0.03 -2.64 16 3 C -0.12 -4.36 8.05 71.98 0.58 -3.78 16 4 C 0.04 2.21 4.04 29.85 0.12 2.33 16 5 C -0.51 -27.96 7.65 25.60 0.20 -27.77 16 6 H 0.07 3.59 5.68 -2.91 -0.02 3.58 16 7 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 8 N -0.94 -56.96 13.29 21.45 0.28 -56.67 16 9 Si 0.96 43.99 29.54 68.60 2.03 46.02 16 10 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 11 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 12 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 13 C 0.17 6.17 4.54 86.38 0.39 6.57 16 14 N -0.69 -22.21 5.11 -351.04 -1.79 -24.00 16 15 C 0.54 17.27 8.43 261.49 2.20 19.47 16 16 N -0.60 -18.76 9.59 -197.98 -1.90 -20.65 16 17 C 0.17 3.78 11.30 84.71 0.96 4.73 16 18 C -0.29 -4.65 10.16 22.45 0.23 -4.42 16 19 C 0.18 3.42 11.30 84.71 0.96 4.38 16 20 N -0.60 -16.53 10.46 -197.99 -2.07 -18.60 16 21 H 0.06 1.82 6.87 -2.39 -0.02 1.81 16 22 H 0.06 2.16 6.62 -2.39 -0.02 2.15 16 23 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 24 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 25 H 0.06 2.16 6.62 -2.39 -0.02 2.15 16 26 H 0.06 1.82 6.86 -2.39 -0.02 1.80 16 27 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 28 H -0.01 -0.62 8.14 -2.38 -0.02 -0.64 16 29 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 30 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 31 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.42 12.27 6.28 -92.70 -0.58 11.69 16 33 H 0.19 2.77 8.06 -2.91 -0.02 2.74 16 34 H 0.18 1.39 8.06 -2.91 -0.02 1.37 16 35 H 0.20 2.07 8.06 -2.91 -0.02 2.05 16 Total: -1.00 -68.21 289.05 3.70 -64.52 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: 0.50 Total: 14.00 kcal Atomic # 6 Polarization: -11.25 SS G_CDS: 6.65 Total: -4.60 kcal Atomic # 7 Polarization: -114.45 SS G_CDS: -5.48 Total: -119.93 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -68.21 3.70 -64.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336749186.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.491 kcal (2) G-P(sol) polarization free energy of solvation -68.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds