Wall clock time and date at job start Sun Mar 29 2020 22:17:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09000 * 109.47345 * 2 1 4 4 N 1.46908 * 109.46999 * 119.99522 * 2 1 3 5 5 C 1.46905 * 110.99686 * 275.00506 * 4 2 1 6 6 C 1.53010 * 109.46820 * 179.97438 * 5 4 2 7 7 C 1.52993 * 109.47137 * 179.97438 * 6 5 4 8 8 C 1.50692 * 109.47439 * 179.97438 * 7 6 5 9 9 H 1.08005 * 120.00110 * 0.02562 * 8 7 6 10 10 C 1.37875 * 120.00494 * 180.02562 * 8 7 6 11 11 N 1.31513 * 120.00390 * 180.02562 * 10 8 7 12 12 Si 1.86805 * 119.99858 * 0.02562 * 10 8 7 13 13 H 1.48497 * 109.47084 * 89.99993 * 12 10 8 14 14 H 1.48496 * 109.47109 * 210.00398 * 12 10 8 15 15 H 1.48503 * 109.46824 * 330.00152 * 12 10 8 16 16 C 1.50696 * 109.47364 * 239.99326 * 2 1 3 17 17 C 1.38387 * 120.00300 * 85.02775 * 16 2 1 18 18 N 1.32127 * 119.99994 * 179.72464 * 17 16 2 19 19 C 1.32149 * 119.99872 * 0.50887 * 18 17 16 20 20 C 1.38346 * 120.00371 * 359.48627 * 19 18 17 21 21 N 1.32127 * 120.00369 * 265.00080 * 16 2 1 22 22 H 1.09001 * 109.47486 * 300.00911 * 1 2 3 23 23 H 1.09003 * 109.46901 * 60.00650 * 1 2 3 24 24 H 1.08997 * 109.47589 * 180.02562 * 1 2 3 25 25 H 1.00893 * 111.00425 * 151.04891 * 4 2 1 26 26 H 1.09001 * 109.46549 * 299.98891 * 5 4 2 27 27 H 1.08996 * 109.47558 * 59.99736 * 5 4 2 28 28 H 1.09001 * 109.46525 * 299.99381 * 6 5 4 29 29 H 1.09002 * 109.46927 * 59.99285 * 6 5 4 30 30 H 1.09001 * 109.47182 * 300.00173 * 7 6 5 31 31 H 1.09012 * 109.47061 * 59.99640 * 7 6 5 32 32 H 0.96996 * 120.00265 * 180.02562 * 11 10 8 33 33 H 1.07999 * 119.99913 * 359.97438 * 17 16 2 34 34 H 1.08002 * 120.00163 * 179.77166 * 19 18 17 35 35 H 1.07999 * 120.00349 * 180.27731 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6924 1.1996 5 6 2.0822 0.2228 2.3470 6 6 2.5948 -0.5329 3.5747 7 6 2.6607 0.4204 4.7695 8 6 3.1649 -0.3240 5.9789 9 1 3.4139 -1.3722 5.9028 10 6 3.3083 0.3329 7.1826 11 7 3.7488 -0.3166 8.2378 12 14 2.8769 2.1457 7.3144 13 1 1.4475 2.2882 7.6905 14 1 3.7276 2.7827 8.3516 15 1 3.1129 2.8071 6.0059 16 6 2.0323 -0.7105 -1.2303 17 6 2.1651 -0.0202 -2.4224 18 7 2.6107 -0.6419 -3.4997 19 6 2.9201 -1.9253 -3.4414 20 6 2.7875 -2.6155 -2.2498 21 7 2.3466 -1.9925 -1.1709 22 1 -0.3634 0.5140 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0276 0.0005 25 1 2.9172 -1.1204 1.0290 26 1 2.7587 1.0463 2.1182 27 1 1.0869 0.6165 2.5525 28 1 1.9180 -1.3562 3.8032 29 1 3.5901 -0.9270 3.3694 30 1 3.3376 1.2435 4.5408 31 1 1.6654 0.8148 4.9750 32 1 3.8494 0.1455 9.0847 33 1 1.9082 1.0277 -2.4710 34 1 3.2809 -2.4345 -4.3229 35 1 3.0446 -3.6633 -2.2010 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336755383.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:31 Heat of formation + Delta-G solvation = 13.171377 kcal Electronic energy + Delta-G solvation = -15705.136081 eV Core-core repulsion = 13122.827595 eV Total energy + Delta-G solvation = -2582.308485 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.08891 -38.35350 -35.99901 -34.98919 -34.10044 -32.28256 -30.46185 -28.07978 -25.93468 -25.44824 -23.86118 -21.97813 -21.69099 -18.93609 -18.50039 -17.96797 -17.30466 -16.55510 -16.38072 -15.86676 -15.50822 -15.31598 -14.82563 -14.51587 -14.07530 -13.79710 -13.48369 -13.28686 -12.85285 -12.68946 -12.58850 -12.49239 -12.15798 -12.14075 -11.76316 -11.52850 -11.44792 -11.27483 -10.75522 -10.20991 -10.00273 -9.32031 -8.28520 -6.33179 -0.19626 0.17534 1.37101 1.39415 1.51572 2.37661 2.73128 3.00954 3.05918 3.06673 3.39219 3.67490 3.78699 4.20503 4.21259 4.27904 4.35722 4.44620 4.48064 4.58387 4.67830 4.77568 4.91200 4.95998 5.02665 5.12528 5.32336 5.43956 5.52713 5.62433 5.67438 6.07310 6.29928 6.37312 6.42975 6.75352 6.85956 7.31385 8.88722 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.048619 B = 0.004067 C = 0.003913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.768107 B = 6883.420135 C = 7154.652103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.135 3.865 3 H 0.079 0.921 4 N -0.682 5.682 5 C 0.069 3.931 6 C -0.090 4.090 7 C -0.009 4.009 8 C -0.535 4.535 9 H 0.026 0.974 10 C -0.001 4.001 11 N -0.955 5.955 12 Si 0.957 3.043 13 H -0.265 1.265 14 H -0.284 1.284 15 H -0.243 1.243 16 C 0.067 3.933 17 C 0.051 3.949 18 N -0.458 5.458 19 C 0.044 3.956 20 C 0.048 3.952 21 N -0.450 5.450 22 H 0.066 0.934 23 H 0.077 0.923 24 H 0.046 0.954 25 H 0.342 0.658 26 H 0.034 0.966 27 H 0.077 0.923 28 H 0.047 0.953 29 H 0.041 0.959 30 H 0.021 0.979 31 H 0.022 0.978 32 H 0.266 0.734 33 H 0.190 0.810 34 H 0.202 0.798 35 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.654 2.093 -25.267 25.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.024 3.976 3 H 0.096 0.904 4 N -0.314 5.314 5 C -0.060 4.060 6 C -0.128 4.128 7 C -0.047 4.047 8 C -0.573 4.573 9 H 0.045 0.955 10 C -0.197 4.197 11 N -0.595 5.595 12 Si 0.779 3.221 13 H -0.190 1.190 14 H -0.210 1.210 15 H -0.167 1.167 16 C -0.073 4.073 17 C -0.109 4.109 18 N -0.173 5.173 19 C -0.115 4.115 20 C -0.112 4.112 21 N -0.165 5.165 22 H 0.084 0.916 23 H 0.096 0.904 24 H 0.066 0.934 25 H 0.161 0.839 26 H 0.052 0.948 27 H 0.095 0.905 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.039 0.961 31 H 0.040 0.960 32 H 0.075 0.925 33 H 0.207 0.793 34 H 0.219 0.781 35 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -5.224 1.868 -24.940 25.550 hybrid contribution 0.881 0.614 0.547 1.205 sum -4.344 2.482 -24.393 24.900 Atomic orbital electron populations 1.21749 0.92227 1.02094 1.02750 1.20497 0.96981 0.95176 0.84931 0.90373 1.60419 1.34192 1.33009 1.03766 1.21994 1.00798 0.93411 0.89786 1.21250 0.99516 0.98302 0.93781 1.19483 0.96346 0.95698 0.93151 1.21537 1.43658 0.96932 0.95210 0.95527 1.26113 0.94448 1.04034 0.95079 1.70085 1.48551 1.39157 1.01747 0.85563 0.78719 0.78772 0.78999 1.18988 1.21022 1.16676 1.22425 0.96622 0.91455 0.96817 1.23842 0.96114 1.02575 0.88362 1.68527 1.08225 1.10652 1.29871 1.24333 0.96182 0.90756 1.00266 1.24365 0.94975 1.03014 0.88852 1.68272 1.07630 1.09206 1.31418 0.91550 0.90367 0.93433 0.83915 0.94798 0.90455 0.93464 0.94048 0.96061 0.95984 0.92501 0.79335 0.78119 0.78721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.56 9.40 71.98 0.68 -1.89 16 2 C 0.14 2.92 2.88 44.16 0.13 3.05 16 3 H 0.08 1.45 7.77 -2.39 -0.02 1.43 16 4 N -0.68 -19.15 6.06 -495.43 -3.00 -22.16 16 5 C 0.07 2.13 5.48 86.31 0.47 2.60 16 6 C -0.09 -3.66 5.41 30.60 0.17 -3.49 16 7 C -0.01 -0.42 4.04 29.84 0.12 -0.30 16 8 C -0.54 -31.95 9.66 25.60 0.25 -31.70 16 9 H 0.03 1.76 7.99 -2.91 -0.02 1.73 16 10 C 0.00 -0.03 5.47 84.65 0.46 0.43 16 11 N -0.95 -61.35 13.96 21.45 0.30 -61.05 16 12 Si 0.96 44.69 27.47 68.60 1.88 46.57 16 13 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 14 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 15 H -0.24 -10.40 6.54 99.48 0.65 -9.75 16 16 C 0.07 1.43 5.70 42.55 0.24 1.67 16 17 C 0.05 0.91 10.90 84.68 0.92 1.83 16 18 N -0.46 -8.60 10.50 -195.22 -2.05 -10.65 16 19 C 0.04 0.64 11.22 84.67 0.95 1.59 16 20 C 0.05 0.79 11.22 84.67 0.95 1.74 16 21 N -0.45 -10.43 9.46 -183.30 -1.73 -12.17 16 22 H 0.07 1.33 7.45 -2.39 -0.02 1.31 16 23 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 24 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.34 10.07 7.86 -89.70 -0.71 9.37 16 26 H 0.03 0.98 8.06 -2.39 -0.02 0.96 16 27 H 0.08 2.27 7.44 -2.39 -0.02 2.25 16 28 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.02 0.97 7.20 -2.39 -0.02 0.96 16 31 H 0.02 1.00 7.57 -2.38 -0.02 0.98 16 32 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 33 H 0.19 2.30 8.06 -2.91 -0.02 2.28 16 34 H 0.20 1.36 8.06 -2.91 -0.02 1.34 16 35 H 0.20 1.96 8.06 -2.91 -0.02 1.94 16 Total: -1.00 -72.56 295.99 1.05 -71.51 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: 0.31 Total: 12.39 kcal Atomic # 6 Polarization: -29.80 SS G_CDS: 5.34 Total: -24.46 kcal Atomic # 7 Polarization: -99.53 SS G_CDS: -6.49 Total: -106.02 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.88 Total: 46.57 kcal Total: -72.56 1.05 -71.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336755383.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.685 kcal (2) G-P(sol) polarization free energy of solvation -72.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds