Wall clock time and date at job start Sun Mar 29 2020 22:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47203 * 2 1 4 4 C 1.52995 * 109.47262 * 120.00237 * 2 1 3 5 5 C 1.50705 * 109.46665 * 240.00146 * 2 1 3 6 6 C 1.40065 * 119.87632 * 74.72908 * 5 2 1 7 7 C 1.35715 * 119.52213 * 179.71849 * 6 5 2 8 8 N 1.36219 * 119.25463 * 0.54169 * 7 6 5 9 9 H 0.97003 * 120.12937 * 179.69910 * 8 7 6 10 10 C 1.37494 * 119.73554 * 359.72496 * 8 7 6 11 11 N 1.31434 * 119.76932 * 179.97438 * 10 8 7 12 12 C 1.46506 * 120.00064 * 353.61456 * 11 10 8 13 13 C 1.50698 * 109.46998 * 114.20194 * 12 11 10 14 14 H 1.08001 * 120.00283 * 359.97438 * 13 12 11 15 15 C 1.37876 * 119.99879 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99925 * 179.97438 * 15 13 12 17 17 Si 1.86803 * 120.00047 * 359.97438 * 15 13 12 18 18 H 1.48496 * 109.46858 * 89.99871 * 17 15 13 19 19 H 1.48497 * 109.47053 * 210.00162 * 17 15 13 20 20 H 1.48501 * 109.46743 * 329.99869 * 17 15 13 21 21 N 1.31388 * 119.87345 * 254.99649 * 5 2 1 22 22 H 1.09003 * 109.47339 * 59.99874 * 1 2 3 23 23 H 1.08999 * 109.47289 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46977 * 299.99960 * 1 2 3 25 25 H 1.09000 * 109.47121 * 60.00128 * 3 2 1 26 26 H 1.09003 * 109.47186 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.47367 * 299.99832 * 3 2 1 28 28 H 1.08999 * 109.47061 * 59.99746 * 4 2 1 29 29 H 1.08995 * 109.47535 * 179.97438 * 4 2 1 30 30 H 1.09000 * 109.46964 * 299.99811 * 4 2 1 31 31 H 1.08002 * 120.23651 * 359.97438 * 6 5 2 32 32 H 1.08007 * 120.37146 * 180.27061 * 7 6 5 33 33 H 1.08997 * 109.46595 * 234.20118 * 12 11 10 34 34 H 1.09000 * 109.46783 * 354.19997 * 12 11 10 35 35 H 0.97001 * 119.99715 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 2.0322 -0.7104 -1.2306 6 6 1.9632 -0.0779 -2.4784 7 6 2.4228 -0.7221 -3.5810 8 7 2.9333 -1.9785 -3.4535 9 1 3.2613 -2.4523 -4.2339 10 6 2.9813 -2.5727 -2.2145 11 7 3.4733 -3.7852 -2.0909 12 6 3.8383 -4.5529 -3.2841 13 6 5.3295 -4.7690 -3.3057 14 1 5.9440 -4.3737 -2.5104 15 6 5.9095 -5.4705 -4.3413 16 7 7.2110 -5.6587 -4.3604 17 14 4.8467 -6.1536 -5.7173 18 1 4.7269 -5.1428 -6.7985 19 1 5.4714 -7.3869 -6.2595 20 1 3.4969 -6.4742 -5.1875 21 7 2.5284 -1.9228 -1.1296 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.6767 1.9563 0.8900 26 1 3.1300 1.4424 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 -1.7489 1.2491 29 1 3.1300 -0.7217 1.2490 30 1 1.6767 -0.2074 2.1392 31 1 1.5509 0.9168 -2.5618 32 1 2.3802 -0.2455 -4.5493 33 1 3.3315 -5.5177 -3.2644 34 1 3.5379 -4.0028 -4.1759 35 1 7.6189 -6.1526 -5.0888 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338703937.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:14 Heat of formation + Delta-G solvation = 63.800212 kcal Electronic energy + Delta-G solvation = -16384.110669 eV Core-core repulsion = 13803.997615 eV Total energy + Delta-G solvation = -2580.113054 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.61200 -37.41059 -34.50365 -33.37214 -32.44653 -30.11788 -27.71574 -27.29437 -26.79431 -24.68230 -22.79908 -21.15904 -19.03741 -18.31314 -17.22248 -16.79960 -15.60468 -14.88569 -14.69333 -14.27949 -14.01231 -13.77398 -13.49621 -12.94769 -12.50374 -12.37283 -12.30906 -12.02985 -11.62815 -11.24899 -11.13655 -11.08777 -10.84778 -10.77754 -10.59720 -10.33532 -9.77035 -9.53492 -9.36013 -8.73306 -8.29468 -6.85868 -6.13571 -4.12588 1.19642 2.21577 3.16254 3.27454 3.29831 3.36267 4.16444 4.23805 4.31934 4.55460 4.90305 5.02462 5.04464 5.16420 5.32566 5.40364 5.56267 5.68008 5.74061 5.80190 5.90075 6.00779 6.01971 6.08182 6.21327 6.31893 6.43034 6.52276 6.58358 6.90986 7.12290 7.29228 7.59452 8.30069 8.45734 8.95258 9.16809 9.47836 10.99513 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.044586 B = 0.005629 C = 0.005417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.854211 B = 4972.629223 C = 5167.854469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.021 4.021 3 C -0.137 4.137 4 C -0.130 4.130 5 C 0.252 3.748 6 C -0.317 4.317 7 C 0.187 3.813 8 N -0.662 5.662 9 H 0.420 0.580 10 C 0.483 3.517 11 N -0.533 5.533 12 C 0.162 3.838 13 C -0.513 4.513 14 H 0.079 0.921 15 C 0.070 3.930 16 N -0.895 5.895 17 Si 0.875 3.125 18 H -0.277 1.277 19 H -0.281 1.281 20 H -0.266 1.266 21 N -0.480 5.480 22 H 0.058 0.942 23 H 0.058 0.942 24 H 0.063 0.937 25 H 0.062 0.938 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.058 0.942 30 H 0.050 0.950 31 H 0.141 0.859 32 H 0.159 0.841 33 H 0.043 0.957 34 H -0.024 1.024 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.292 15.953 3.032 21.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.022 4.022 3 C -0.195 4.195 4 C -0.188 4.188 5 C 0.077 3.923 6 C -0.348 4.348 7 C 0.047 3.953 8 N -0.288 5.288 9 H 0.260 0.740 10 C 0.117 3.883 11 N -0.258 5.258 12 C 0.033 3.967 13 C -0.552 4.552 14 H 0.097 0.903 15 C -0.133 4.133 16 N -0.534 5.534 17 Si 0.702 3.298 18 H -0.203 1.203 19 H -0.207 1.207 20 H -0.190 1.190 21 N -0.196 5.196 22 H 0.077 0.923 23 H 0.077 0.923 24 H 0.082 0.918 25 H 0.081 0.919 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.087 0.913 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.159 0.841 32 H 0.176 0.824 33 H 0.060 0.940 34 H -0.006 1.006 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.634 14.299 4.258 20.211 hybrid contribution -0.260 0.165 -2.890 2.906 sum -13.894 14.464 1.368 20.102 Atomic orbital electron populations 1.21820 0.93001 1.02450 1.01987 1.19544 0.95849 0.94748 0.92052 1.21884 1.01579 0.94031 1.02041 1.21706 1.01662 1.00909 0.94506 1.21573 0.87740 0.89082 0.93898 1.20915 1.17178 1.04265 0.92475 1.22249 0.88124 0.84821 1.00082 1.44318 1.56017 1.14938 1.13482 0.73955 1.21041 0.96191 0.92196 0.78830 1.72882 1.18470 1.03353 1.31126 1.20051 0.98005 0.93145 0.85526 1.21046 0.89432 1.35322 1.09352 0.90336 1.24950 0.94917 0.95530 0.97854 1.69895 1.09617 1.41162 1.32697 0.86858 0.81297 0.79272 0.82390 1.20264 1.20694 1.19024 1.68643 1.15658 1.08784 1.26467 0.92310 0.92252 0.91842 0.91921 0.92264 0.92081 0.91270 0.92286 0.93071 0.84143 0.82369 0.93951 1.00620 0.92462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.25 8.41 37.16 0.31 -0.93 16 2 C -0.02 -0.24 0.88 -155.66 -0.14 -0.37 16 3 C -0.14 -1.21 8.10 37.15 0.30 -0.91 16 4 C -0.13 -1.61 7.82 37.15 0.29 -1.31 16 5 C 0.25 3.70 5.59 -82.09 -0.46 3.25 16 6 C -0.32 -3.83 9.06 -39.80 -0.36 -4.19 16 7 C 0.19 2.34 11.30 -16.51 -0.19 2.15 16 8 N -0.66 -11.58 5.26 -13.78 -0.07 -11.66 16 9 H 0.42 7.38 6.25 -40.82 -0.25 7.12 16 10 C 0.48 10.47 8.39 -323.06 -2.71 7.76 16 11 N -0.53 -13.74 10.66 -63.54 -0.68 -14.42 16 12 C 0.16 4.27 5.08 -5.19 -0.03 4.25 16 13 C -0.51 -15.56 9.94 -34.44 -0.34 -15.90 16 14 H 0.08 2.67 8.06 -52.49 -0.42 2.25 16 15 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 16 N -0.90 -27.96 13.96 55.43 0.77 -27.19 16 17 Si 0.88 21.40 27.47 -169.99 -4.67 16.73 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16 21 N -0.48 -9.35 9.20 -10.02 -0.09 -9.44 16 22 H 0.06 0.48 8.10 -51.93 -0.42 0.06 16 23 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 24 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.45 6.74 -51.93 -0.35 0.10 16 28 H 0.07 0.98 7.86 -51.93 -0.41 0.57 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.14 1.20 6.79 -52.49 -0.36 0.84 16 32 H 0.16 1.22 8.06 -52.48 -0.42 0.80 16 33 H 0.04 1.15 7.20 -51.93 -0.37 0.77 16 34 H -0.02 -0.56 4.93 -51.93 -0.26 -0.82 16 35 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 288.47 15.07 4.35 4.35 Total: -1.00 -35.55 288.47 -8.78 -44.33 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -4.97 Total: 1.54 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: -3.42 Total: -4.25 kcal Atomic # 7 Polarization: -62.63 SS G_CDS: -0.07 Total: -62.70 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.67 Total: 16.73 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -35.55 -8.78 -44.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338703937.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.128 kcal (2) G-P(sol) polarization free energy of solvation -35.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds