Wall clock time and date at job start Sun Mar 29 2020 22:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47203 * 2 1 4 4 C 1.52995 * 109.47262 * 120.00237 * 2 1 3 5 5 C 1.50705 * 109.46665 * 240.00146 * 2 1 3 6 6 C 1.40065 * 119.87632 * 74.72908 * 5 2 1 7 7 C 1.35715 * 119.52213 * 179.71849 * 6 5 2 8 8 N 1.36219 * 119.25463 * 0.54169 * 7 6 5 9 9 H 0.97003 * 120.12937 * 179.69910 * 8 7 6 10 10 C 1.37494 * 119.73554 * 359.72496 * 8 7 6 11 11 N 1.31434 * 119.76932 * 179.97438 * 10 8 7 12 12 C 1.46506 * 120.00064 * 353.61456 * 11 10 8 13 13 C 1.50698 * 109.46998 * 114.20194 * 12 11 10 14 14 H 1.08001 * 120.00283 * 359.97438 * 13 12 11 15 15 C 1.37876 * 119.99879 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99925 * 179.97438 * 15 13 12 17 17 Si 1.86803 * 120.00047 * 359.97438 * 15 13 12 18 18 H 1.48496 * 109.46858 * 89.99871 * 17 15 13 19 19 H 1.48497 * 109.47053 * 210.00162 * 17 15 13 20 20 H 1.48501 * 109.46743 * 329.99869 * 17 15 13 21 21 N 1.31388 * 119.87345 * 254.99649 * 5 2 1 22 22 H 1.09003 * 109.47339 * 59.99874 * 1 2 3 23 23 H 1.08999 * 109.47289 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46977 * 299.99960 * 1 2 3 25 25 H 1.09000 * 109.47121 * 60.00128 * 3 2 1 26 26 H 1.09003 * 109.47186 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.47367 * 299.99832 * 3 2 1 28 28 H 1.08999 * 109.47061 * 59.99746 * 4 2 1 29 29 H 1.08995 * 109.47535 * 179.97438 * 4 2 1 30 30 H 1.09000 * 109.46964 * 299.99811 * 4 2 1 31 31 H 1.08002 * 120.23651 * 359.97438 * 6 5 2 32 32 H 1.08007 * 120.37146 * 180.27061 * 7 6 5 33 33 H 1.08997 * 109.46595 * 234.20118 * 12 11 10 34 34 H 1.09000 * 109.46783 * 354.19997 * 12 11 10 35 35 H 0.97001 * 119.99715 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 2.0322 -0.7104 -1.2306 6 6 1.9632 -0.0779 -2.4784 7 6 2.4228 -0.7221 -3.5810 8 7 2.9333 -1.9785 -3.4535 9 1 3.2613 -2.4523 -4.2339 10 6 2.9813 -2.5727 -2.2145 11 7 3.4733 -3.7852 -2.0909 12 6 3.8383 -4.5529 -3.2841 13 6 5.3295 -4.7690 -3.3057 14 1 5.9440 -4.3737 -2.5104 15 6 5.9095 -5.4705 -4.3413 16 7 7.2110 -5.6587 -4.3604 17 14 4.8467 -6.1536 -5.7173 18 1 4.7269 -5.1428 -6.7985 19 1 5.4714 -7.3869 -6.2595 20 1 3.4969 -6.4742 -5.1875 21 7 2.5284 -1.9228 -1.1296 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.6767 1.9563 0.8900 26 1 3.1300 1.4424 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 -1.7489 1.2491 29 1 3.1300 -0.7217 1.2490 30 1 1.6767 -0.2074 2.1392 31 1 1.5509 0.9168 -2.5618 32 1 2.3802 -0.2455 -4.5493 33 1 3.3315 -5.5177 -3.2644 34 1 3.5379 -4.0028 -4.1759 35 1 7.6189 -6.1526 -5.0888 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338703937.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:14 Heat of formation + Delta-G solvation = 38.493590 kcal Electronic energy + Delta-G solvation = -16385.208046 eV Core-core repulsion = 13803.997615 eV Total energy + Delta-G solvation = -2581.210432 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.92159 -38.53218 -36.15894 -34.74497 -34.40915 -31.63771 -29.37937 -28.02395 -27.90345 -26.00505 -24.43331 -22.72435 -20.20878 -19.67631 -19.03273 -18.49999 -16.87602 -16.36172 -16.03483 -15.93974 -15.07338 -14.85583 -14.70783 -14.46397 -14.32264 -13.81090 -13.17822 -13.07768 -12.86493 -12.63052 -12.45921 -12.40560 -12.20101 -12.08405 -11.84923 -11.69712 -11.64303 -11.00219 -10.96117 -10.78863 -9.91341 -8.45028 -8.37757 -6.48505 0.01285 0.95402 1.24811 1.31827 1.43858 2.00148 2.25610 2.84479 2.91165 2.95924 3.59595 3.95073 4.10774 4.15191 4.27166 4.39934 4.50176 4.69702 4.83555 4.90373 4.90612 4.96924 5.01486 5.09011 5.13197 5.17024 5.29188 5.38295 5.43055 5.53026 5.54798 5.73358 5.92993 6.21733 6.55043 6.93695 7.13809 7.66325 8.77150 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.044586 B = 0.005629 C = 0.005417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.854211 B = 4972.629223 C = 5167.854469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.024 4.024 3 C -0.133 4.133 4 C -0.129 4.129 5 C 0.256 3.744 6 C -0.308 4.308 7 C 0.187 3.813 8 N -0.667 5.667 9 H 0.418 0.582 10 C 0.501 3.499 11 N -0.622 5.622 12 C 0.181 3.819 13 C -0.534 4.534 14 H 0.014 0.986 15 C 0.010 3.990 16 N -0.945 5.945 17 Si 0.961 3.039 18 H -0.247 1.247 19 H -0.275 1.275 20 H -0.255 1.255 21 N -0.539 5.539 22 H 0.079 0.921 23 H 0.037 0.963 24 H 0.087 0.913 25 H 0.085 0.915 26 H 0.043 0.957 27 H 0.086 0.914 28 H 0.040 0.960 29 H 0.033 0.967 30 H 0.080 0.920 31 H 0.192 0.808 32 H 0.219 0.781 33 H 0.026 0.974 34 H 0.001 0.999 35 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.391 19.260 0.993 25.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.025 4.025 3 C -0.191 4.191 4 C -0.187 4.187 5 C 0.086 3.914 6 C -0.338 4.338 7 C 0.050 3.950 8 N -0.291 5.291 9 H 0.258 0.742 10 C 0.136 3.864 11 N -0.353 5.353 12 C 0.051 3.949 13 C -0.572 4.572 14 H 0.032 0.968 15 C -0.188 4.188 16 N -0.585 5.585 17 Si 0.782 3.218 18 H -0.171 1.171 19 H -0.200 1.200 20 H -0.179 1.179 21 N -0.258 5.258 22 H 0.098 0.902 23 H 0.056 0.944 24 H 0.106 0.894 25 H 0.103 0.897 26 H 0.062 0.938 27 H 0.105 0.895 28 H 0.059 0.941 29 H 0.052 0.948 30 H 0.099 0.901 31 H 0.209 0.791 32 H 0.235 0.765 33 H 0.044 0.956 34 H 0.019 0.981 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -16.780 17.731 2.232 24.514 hybrid contribution 0.659 -0.553 -2.099 2.269 sum -16.121 17.178 0.133 23.558 Atomic orbital electron populations 1.21815 0.90782 1.01829 1.04306 1.19794 0.97409 0.95725 0.89589 1.21895 1.00642 0.92019 1.04498 1.21685 1.00024 1.00037 0.96929 1.22531 0.84437 0.87627 0.96776 1.21526 1.15503 1.05887 0.90839 1.23288 0.86109 0.82568 1.03071 1.44358 1.55865 1.16809 1.12064 0.74176 1.21204 0.93192 0.91394 0.80580 1.72800 1.25218 1.06520 1.30759 1.19620 0.94565 0.93329 0.87350 1.21220 0.91728 1.36082 1.08149 0.96781 1.26052 0.96518 0.95220 1.01021 1.70071 1.12097 1.42093 1.34211 0.85526 0.79006 0.79013 0.78260 1.17116 1.19969 1.17940 1.68740 1.19532 1.11521 1.26039 0.90163 0.94371 0.89399 0.89658 0.93806 0.89538 0.94113 0.94812 0.90138 0.79089 0.76451 0.95614 0.98108 0.91895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.93 8.41 71.98 0.61 -1.32 16 2 C -0.02 -0.48 0.88 -52.93 -0.05 -0.53 16 3 C -0.13 -1.77 8.10 71.98 0.58 -1.19 16 4 C -0.13 -3.17 7.82 71.98 0.56 -2.61 16 5 C 0.26 7.04 5.59 43.07 0.24 7.28 16 6 C -0.31 -6.02 9.06 22.13 0.20 -5.82 16 7 C 0.19 3.87 11.30 83.43 0.94 4.82 16 8 N -0.67 -22.50 5.26 -197.51 -1.04 -23.54 16 9 H 0.42 14.21 6.25 -92.71 -0.58 13.63 16 10 C 0.50 22.38 8.39 261.57 2.20 24.58 16 11 N -0.62 -34.17 10.66 -354.95 -3.78 -37.95 16 12 C 0.18 9.98 5.08 85.63 0.44 10.42 16 13 C -0.53 -34.47 9.94 25.60 0.25 -34.21 16 14 H 0.01 1.03 8.06 -2.91 -0.02 1.01 16 15 C 0.01 0.60 5.47 84.65 0.46 1.06 16 16 N -0.95 -61.48 13.96 21.45 0.30 -61.18 16 17 Si 0.96 44.60 27.47 68.60 1.88 46.49 16 18 H -0.25 -10.27 7.11 99.48 0.71 -9.56 16 19 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 20 H -0.26 -11.38 6.54 99.48 0.65 -10.73 16 21 N -0.54 -21.52 9.20 -185.60 -1.71 -23.23 16 22 H 0.08 0.87 8.10 -2.39 -0.02 0.85 16 23 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 24 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.09 0.73 6.74 -2.39 -0.02 0.71 16 28 H 0.04 1.21 7.86 -2.39 -0.02 1.19 16 29 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.19 1.83 6.79 -2.91 -0.02 1.81 16 32 H 0.22 1.89 8.06 -2.91 -0.02 1.87 16 33 H 0.03 1.46 7.20 -2.39 -0.02 1.44 16 34 H 0.00 0.07 4.93 -2.39 -0.01 0.06 16 35 H 0.27 16.15 8.31 -92.71 -0.77 15.38 16 Total: -1.00 -87.96 288.47 2.54 -85.42 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: 0.45 Total: 11.51 kcal Atomic # 6 Polarization: -3.96 SS G_CDS: 6.44 Total: 2.48 kcal Atomic # 7 Polarization: -139.67 SS G_CDS: -6.23 Total: -145.90 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 1.88 Total: 46.49 kcal Total: -87.96 2.54 -85.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338703937.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.917 kcal (2) G-P(sol) polarization free energy of solvation -87.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds