Wall clock time and date at job start Sun Mar 29 2020 21:48:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34668 * 126.59149 * 2 1 4 4 N 1.34125 * 108.02593 * 179.97438 * 3 2 1 5 5 C 1.30506 * 109.25401 * 359.97438 * 4 3 2 6 6 C 1.50695 * 125.65303 * 180.02562 * 5 4 3 7 7 N 1.46503 * 109.47300 * 90.02428 * 6 5 4 8 8 C 1.36934 * 119.99766 * 89.99770 * 7 6 5 9 9 H 1.07997 * 120.00011 * 218.75561 * 8 7 6 10 10 C 1.38811 * 119.99828 * 38.76080 * 8 7 6 11 11 N 1.31620 * 120.00401 * 19.61681 * 10 8 7 12 12 Si 1.86801 * 119.99997 * 199.61363 * 10 8 7 13 13 H 1.48497 * 109.46922 * 359.97438 * 12 10 8 14 14 H 1.48495 * 109.47438 * 119.99954 * 12 10 8 15 15 H 1.48507 * 109.47144 * 240.00013 * 12 10 8 16 16 C 1.46495 * 119.99877 * 269.72779 * 7 6 5 17 17 C 1.53004 * 117.49717 * 194.00989 * 16 7 6 18 18 C 1.53004 * 60.00057 * 252.50876 * 17 16 7 19 19 N 1.35047 * 108.69702 * 0.26331 * 5 4 3 20 20 C 1.46504 * 126.39610 * 179.73425 * 19 5 4 21 21 H 1.09002 * 109.47521 * 90.02343 * 1 2 3 22 22 H 1.09000 * 109.47275 * 210.02198 * 1 2 3 23 23 H 1.08998 * 109.47662 * 330.02175 * 1 2 3 24 24 H 1.08009 * 125.98832 * 359.95963 * 3 2 1 25 25 H 1.09005 * 109.47200 * 330.02767 * 6 5 4 26 26 H 1.09002 * 109.47120 * 210.02688 * 6 5 4 27 27 H 0.96998 * 120.00213 * 174.96179 * 11 10 8 28 28 H 1.08996 * 115.55529 * 339.71755 * 16 7 6 29 29 H 1.09002 * 117.49898 * 359.97438 * 17 16 7 30 30 H 1.09001 * 117.49846 * 145.02078 * 17 16 7 31 31 H 1.08998 * 117.50020 * 252.50706 * 18 17 16 32 32 H 1.09001 * 117.51497 * 107.47760 * 18 17 16 33 33 H 1.08997 * 109.46592 * 90.00211 * 20 19 5 34 34 H 1.08995 * 109.46923 * 210.00350 * 20 19 5 35 35 H 1.08998 * 109.47057 * 330.00515 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0813 0.0000 4 7 3.5812 0.6542 0.0006 5 6 3.5968 -0.6508 0.0015 6 6 4.8318 -1.5143 0.0029 7 7 5.2308 -1.7938 1.3846 8 6 4.7376 -2.8962 2.0300 9 1 4.4716 -2.8361 3.0749 10 6 4.5796 -4.0909 1.3411 11 7 5.2365 -4.2954 0.2190 12 14 3.4348 -5.4084 2.0066 13 1 2.8205 -4.9365 3.2735 14 1 2.3678 -5.6857 1.0117 15 1 4.2066 -6.6509 2.2639 16 6 6.1620 -0.8970 2.0737 17 6 6.7949 -1.3988 3.3731 18 6 5.7176 -0.3132 3.4163 19 7 2.3230 -1.0990 -0.0044 20 6 1.8944 -2.4999 -0.0110 21 1 -0.3634 -0.0004 -1.0277 22 1 -0.3634 -0.8898 0.5142 23 1 -0.3634 0.8901 0.5135 24 1 1.9864 2.1118 -0.0006 25 1 5.6401 -0.9933 -0.5104 26 1 4.6200 -2.4521 -0.5109 27 1 5.1835 -5.1567 -0.2240 28 1 6.7718 -0.2656 1.4275 29 1 6.5181 -2.3959 3.7155 30 1 7.8215 -1.0976 3.5820 31 1 6.0354 0.7021 3.6536 32 1 4.7322 -0.5960 3.7867 33 1 1.7847 -2.8511 1.0150 34 1 0.9388 -2.5851 -0.5283 35 1 2.6409 -3.1058 -0.5246 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342798773.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:46 Heat of formation + Delta-G solvation = 105.846223 kcal Electronic energy + Delta-G solvation = -17297.461902 eV Core-core repulsion = 14719.172100 eV Total energy + Delta-G solvation = -2578.289802 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.28919 -36.96583 -33.75468 -33.23488 -31.71551 -30.43454 -27.20203 -26.27843 -24.74391 -23.34178 -21.29075 -19.99721 -19.94784 -18.85420 -16.61608 -15.87740 -15.32799 -15.10418 -14.38117 -13.99522 -13.73839 -13.14572 -12.96297 -12.79394 -12.35150 -12.07396 -12.02046 -11.89792 -11.69054 -11.12549 -10.92313 -10.77861 -10.56435 -10.44147 -10.10519 -9.65436 -9.26288 -9.13742 -8.76709 -8.60378 -7.44097 -6.60139 -6.00344 -3.56271 2.75830 3.13817 3.27248 3.29794 3.58334 3.90622 4.28791 4.97223 5.16696 5.26635 5.31956 5.34335 5.50562 5.60756 5.74098 5.82405 5.98490 5.99770 6.07922 6.14934 6.20643 6.30469 6.32295 6.56343 6.67543 6.73604 7.04057 7.16953 7.21119 7.28562 7.54604 7.68495 8.03014 8.36261 8.97790 8.99925 9.60648 10.21519 11.01450 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.018802 B = 0.012434 C = 0.008763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.845215 B = 2251.295624 C = 3194.521872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.062 4.062 3 C -0.035 4.035 4 N -0.506 5.506 5 C 0.227 3.773 6 C 0.220 3.780 7 N -0.539 5.539 8 C -0.255 4.255 9 H 0.061 0.939 10 C 0.018 3.982 11 N -0.887 5.887 12 Si 0.885 3.115 13 H -0.274 1.274 14 H -0.283 1.283 15 H -0.285 1.285 16 C 0.135 3.865 17 C -0.196 4.196 18 C -0.221 4.221 19 N -0.443 5.443 20 C 0.080 3.920 21 H 0.062 0.938 22 H 0.057 0.943 23 H 0.073 0.927 24 H 0.155 0.845 25 H 0.061 0.939 26 H 0.111 0.889 27 H 0.259 0.741 28 H 0.092 0.908 29 H 0.097 0.903 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.312 3.807 -0.957 7.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.177 4.177 3 C -0.184 4.184 4 N -0.225 5.225 5 C -0.038 4.038 6 C 0.091 3.909 7 N -0.255 5.255 8 C -0.385 4.385 9 H 0.079 0.921 10 C -0.182 4.182 11 N -0.529 5.529 12 Si 0.713 3.287 13 H -0.199 1.199 14 H -0.209 1.209 15 H -0.212 1.212 16 C 0.026 3.974 17 C -0.235 4.235 18 C -0.261 4.261 19 N -0.125 5.125 20 C -0.063 4.063 21 H 0.080 0.920 22 H 0.076 0.924 23 H 0.092 0.908 24 H 0.172 0.828 25 H 0.079 0.921 26 H 0.128 0.872 27 H 0.070 0.930 28 H 0.109 0.891 29 H 0.116 0.884 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -5.705 3.983 -1.137 7.050 hybrid contribution -1.453 -1.247 0.599 2.006 sum -7.158 2.736 -0.538 7.682 Atomic orbital electron populations 1.20054 0.88442 1.02415 1.01573 1.21048 0.93920 0.87668 1.15085 1.21870 0.89371 0.97536 1.09585 1.70258 1.21445 1.09009 1.21775 1.25353 0.87036 0.90898 1.00503 1.19518 0.87160 0.96583 0.87633 1.43260 1.47060 1.24243 1.10930 1.18989 1.36519 0.87417 0.95533 0.92132 1.25204 0.98752 0.96707 0.97543 1.69875 1.40933 1.23054 1.19067 0.86525 0.81093 0.82113 0.78950 1.19886 1.20908 1.21181 1.21090 0.94183 0.95489 0.86675 1.23095 0.95831 0.99233 1.05297 1.23257 0.98850 0.96296 1.07741 1.45147 1.07018 1.06342 1.54022 1.21944 1.00866 0.79930 1.03520 0.91970 0.92426 0.90839 0.82752 0.92098 0.87153 0.93035 0.89062 0.88445 0.90733 0.90893 0.90161 0.90848 0.91441 0.88706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.88 9.99 36.00 0.36 -0.52 16 2 C -0.06 -1.13 6.95 -81.60 -0.57 -1.70 16 3 C -0.03 -0.67 11.79 -17.81 -0.21 -0.88 16 4 N -0.51 -11.36 11.25 -10.81 -0.12 -11.48 16 5 C 0.23 5.11 7.49 -155.41 -1.16 3.95 16 6 C 0.22 5.15 5.64 -5.19 -0.03 5.12 16 7 N -0.54 -13.14 2.76 -167.02 -0.46 -13.60 16 8 C -0.25 -6.50 8.02 -15.06 -0.12 -6.62 16 9 H 0.06 1.62 7.27 -52.49 -0.38 1.24 16 10 C 0.02 0.46 4.84 -17.43 -0.08 0.37 16 11 N -0.89 -23.06 11.44 55.49 0.63 -22.42 16 12 Si 0.88 19.64 29.13 -169.99 -4.95 14.69 16 13 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 14 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 15 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 16 C 0.13 3.00 6.61 -67.93 -0.45 2.56 16 17 C -0.20 -4.03 9.81 -26.73 -0.26 -4.29 16 18 C -0.22 -4.57 10.10 -26.73 -0.27 -4.84 16 19 N -0.44 -8.98 3.15 -116.68 -0.37 -9.35 16 20 C 0.08 1.47 10.66 59.85 0.64 2.10 16 21 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 22 H 0.06 0.73 7.89 -51.93 -0.41 0.32 16 23 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.16 2.50 8.06 -52.48 -0.42 2.08 16 25 H 0.06 1.40 8.03 -51.93 -0.42 0.98 16 26 H 0.11 2.73 4.45 -51.93 -0.23 2.50 16 27 H 0.26 6.49 8.32 -40.82 -0.34 6.15 16 28 H 0.09 1.94 8.10 -51.93 -0.42 1.52 16 29 H 0.10 2.17 6.96 -51.93 -0.36 1.81 16 30 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 31 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 32 H 0.08 1.80 8.01 -51.93 -0.42 1.38 16 33 H 0.07 1.40 7.66 -51.93 -0.40 1.00 16 34 H 0.07 0.99 7.82 -51.93 -0.41 0.58 16 35 H 0.09 1.86 6.89 -51.93 -0.36 1.50 16 LS Contribution 292.99 15.07 4.42 4.42 Total: -1.00 -28.26 292.99 -8.06 -36.32 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -5.05 Total: 6.19 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: -2.16 Total: -4.76 kcal Atomic # 7 Polarization: -56.54 SS G_CDS: -0.32 Total: -56.85 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -4.95 Total: 14.69 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -28.26 -8.06 -36.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342798773.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.165 kcal (2) G-P(sol) polarization free energy of solvation -28.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds