Wall clock time and date at job start Sun Mar 29 2020 21:48:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34668 * 126.59149 * 2 1 4 4 N 1.34125 * 108.02593 * 179.97438 * 3 2 1 5 5 C 1.30506 * 109.25401 * 359.97438 * 4 3 2 6 6 C 1.50695 * 125.65303 * 180.02562 * 5 4 3 7 7 N 1.46503 * 109.47300 * 90.02428 * 6 5 4 8 8 C 1.36934 * 119.99766 * 89.99770 * 7 6 5 9 9 H 1.07997 * 120.00011 * 218.75561 * 8 7 6 10 10 C 1.38811 * 119.99828 * 38.76080 * 8 7 6 11 11 N 1.31620 * 120.00401 * 19.61681 * 10 8 7 12 12 Si 1.86801 * 119.99997 * 199.61363 * 10 8 7 13 13 H 1.48497 * 109.46922 * 359.97438 * 12 10 8 14 14 H 1.48495 * 109.47438 * 119.99954 * 12 10 8 15 15 H 1.48507 * 109.47144 * 240.00013 * 12 10 8 16 16 C 1.46495 * 119.99877 * 269.72779 * 7 6 5 17 17 C 1.53004 * 117.49717 * 194.00989 * 16 7 6 18 18 C 1.53004 * 60.00057 * 252.50876 * 17 16 7 19 19 N 1.35047 * 108.69702 * 0.26331 * 5 4 3 20 20 C 1.46504 * 126.39610 * 179.73425 * 19 5 4 21 21 H 1.09002 * 109.47521 * 90.02343 * 1 2 3 22 22 H 1.09000 * 109.47275 * 210.02198 * 1 2 3 23 23 H 1.08998 * 109.47662 * 330.02175 * 1 2 3 24 24 H 1.08009 * 125.98832 * 359.95963 * 3 2 1 25 25 H 1.09005 * 109.47200 * 330.02767 * 6 5 4 26 26 H 1.09002 * 109.47120 * 210.02688 * 6 5 4 27 27 H 0.96998 * 120.00213 * 174.96179 * 11 10 8 28 28 H 1.08996 * 115.55529 * 339.71755 * 16 7 6 29 29 H 1.09002 * 117.49898 * 359.97438 * 17 16 7 30 30 H 1.09001 * 117.49846 * 145.02078 * 17 16 7 31 31 H 1.08998 * 117.50020 * 252.50706 * 18 17 16 32 32 H 1.09001 * 117.51497 * 107.47760 * 18 17 16 33 33 H 1.08997 * 109.46592 * 90.00211 * 20 19 5 34 34 H 1.08995 * 109.46923 * 210.00350 * 20 19 5 35 35 H 1.08998 * 109.47057 * 330.00515 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0813 0.0000 4 7 3.5812 0.6542 0.0006 5 6 3.5968 -0.6508 0.0015 6 6 4.8318 -1.5143 0.0029 7 7 5.2308 -1.7938 1.3846 8 6 4.7376 -2.8962 2.0300 9 1 4.4716 -2.8361 3.0749 10 6 4.5796 -4.0909 1.3411 11 7 5.2365 -4.2954 0.2190 12 14 3.4348 -5.4084 2.0066 13 1 2.8205 -4.9365 3.2735 14 1 2.3678 -5.6857 1.0117 15 1 4.2066 -6.6509 2.2639 16 6 6.1620 -0.8970 2.0737 17 6 6.7949 -1.3988 3.3731 18 6 5.7176 -0.3132 3.4163 19 7 2.3230 -1.0990 -0.0044 20 6 1.8944 -2.4999 -0.0110 21 1 -0.3634 -0.0004 -1.0277 22 1 -0.3634 -0.8898 0.5142 23 1 -0.3634 0.8901 0.5135 24 1 1.9864 2.1118 -0.0006 25 1 5.6401 -0.9933 -0.5104 26 1 4.6200 -2.4521 -0.5109 27 1 5.1835 -5.1567 -0.2240 28 1 6.7718 -0.2656 1.4275 29 1 6.5181 -2.3959 3.7155 30 1 7.8215 -1.0976 3.5820 31 1 6.0354 0.7021 3.6536 32 1 4.7322 -0.5960 3.7867 33 1 1.7847 -2.8511 1.0150 34 1 0.9388 -2.5851 -0.5283 35 1 2.6409 -3.1058 -0.5246 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342798773.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:46 Heat of formation + Delta-G solvation = 91.022624 kcal Electronic energy + Delta-G solvation = -17298.104702 eV Core-core repulsion = 14719.172100 eV Total energy + Delta-G solvation = -2578.932602 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.83024 -38.73109 -35.53238 -34.77836 -33.33949 -32.04303 -28.85735 -27.75800 -26.43707 -25.02938 -22.97108 -21.74844 -21.51342 -20.43671 -18.43636 -17.55963 -17.00014 -16.74422 -16.11373 -15.75511 -15.16482 -14.76907 -14.47224 -14.04210 -13.90663 -13.69076 -13.46172 -13.24576 -13.08276 -12.92007 -12.67104 -12.61201 -12.27639 -12.21487 -11.91700 -11.45950 -10.97066 -10.72238 -10.49849 -10.33948 -8.93782 -8.48334 -7.91356 -5.52196 1.24082 1.37418 1.45352 1.52302 2.10225 2.29538 2.46247 3.11009 3.41086 3.57097 3.93332 3.98837 4.04509 4.28587 4.33716 4.37296 4.49452 4.52022 4.62168 4.66800 4.72737 4.81703 4.91062 5.01997 5.07714 5.11341 5.30596 5.41186 5.51369 5.66462 5.71116 6.08123 6.40367 6.48603 7.07795 7.40370 7.72936 8.31660 9.08293 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.018802 B = 0.012434 C = 0.008763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.845215 B = 2251.295624 C = 3194.521872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.049 4.049 3 C -0.060 4.060 4 N -0.529 5.529 5 C 0.197 3.803 6 C 0.229 3.771 7 N -0.552 5.552 8 C -0.262 4.262 9 H 0.043 0.957 10 C -0.008 4.008 11 N -0.910 5.910 12 Si 0.934 3.066 13 H -0.277 1.277 14 H -0.265 1.265 15 H -0.291 1.291 16 C 0.108 3.892 17 C -0.183 4.183 18 C -0.207 4.207 19 N -0.449 5.449 20 C 0.082 3.918 21 H 0.084 0.916 22 H 0.066 0.934 23 H 0.095 0.905 24 H 0.183 0.817 25 H 0.052 0.948 26 H 0.095 0.905 27 H 0.260 0.740 28 H 0.098 0.902 29 H 0.076 0.924 30 H 0.105 0.895 31 H 0.097 0.903 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.107 0.893 35 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.055 4.291 -0.807 9.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.164 4.164 3 C -0.208 4.208 4 N -0.249 5.249 5 C -0.068 4.068 6 C 0.100 3.900 7 N -0.269 5.269 8 C -0.392 4.392 9 H 0.060 0.940 10 C -0.206 4.206 11 N -0.552 5.552 12 Si 0.761 3.239 13 H -0.202 1.202 14 H -0.190 1.190 15 H -0.218 1.218 16 C 0.000 4.000 17 C -0.222 4.222 18 C -0.247 4.247 19 N -0.131 5.131 20 C -0.060 4.060 21 H 0.103 0.897 22 H 0.085 0.915 23 H 0.114 0.886 24 H 0.200 0.800 25 H 0.070 0.930 26 H 0.113 0.887 27 H 0.070 0.930 28 H 0.116 0.884 29 H 0.094 0.906 30 H 0.123 0.877 31 H 0.116 0.884 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.126 0.874 35 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.454 4.478 -0.987 8.751 hybrid contribution -0.933 -1.328 0.549 1.713 sum -8.387 3.150 -0.439 8.970 Atomic orbital electron populations 1.20244 0.84487 1.03996 1.03492 1.21883 0.96179 0.86433 1.11950 1.22432 0.88532 0.99385 1.10465 1.70165 1.23530 1.09165 1.22009 1.24924 0.87652 0.91032 1.03179 1.19236 0.87700 0.95927 0.87122 1.43367 1.47801 1.24492 1.11192 1.18892 1.37076 0.88248 0.94947 0.93984 1.25634 0.99441 0.97930 0.97624 1.69971 1.41918 1.23433 1.19916 0.85782 0.79905 0.79570 0.78648 1.20205 1.19027 1.21812 1.21321 0.94992 0.96258 0.87453 1.23070 0.97320 0.98201 1.03597 1.23166 0.97903 0.97528 1.06125 1.45304 1.06734 1.07509 1.53597 1.21982 1.02122 0.78796 1.03113 0.89719 0.91534 0.88595 0.80013 0.92970 0.88725 0.93050 0.88391 0.90552 0.87725 0.88428 0.92326 0.91893 0.87419 0.90637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.43 9.99 71.23 0.71 -0.72 16 2 C -0.05 -1.67 6.95 40.95 0.28 -1.39 16 3 C -0.06 -2.24 11.79 83.52 0.98 -1.26 16 4 N -0.53 -23.67 11.25 -188.13 -2.12 -25.79 16 5 C 0.20 8.92 7.49 138.12 1.03 9.96 16 6 C 0.23 11.03 5.64 85.63 0.48 11.51 16 7 N -0.55 -27.48 2.76 -682.34 -1.88 -29.37 16 8 C -0.26 -13.63 8.02 84.03 0.67 -12.95 16 9 H 0.04 2.32 7.27 -2.91 -0.02 2.30 16 10 C -0.01 -0.39 4.84 84.86 0.41 0.02 16 11 N -0.91 -47.97 11.44 21.65 0.25 -47.72 16 12 Si 0.93 40.27 29.13 68.60 2.00 42.27 16 13 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 14 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 15 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 16 C 0.11 4.86 6.61 45.00 0.30 5.16 16 17 C -0.18 -7.45 9.81 30.60 0.30 -7.15 16 18 C -0.21 -8.46 10.10 30.60 0.31 -8.15 16 19 N -0.45 -17.77 3.15 -523.06 -1.65 -19.42 16 20 C 0.08 2.90 10.66 127.77 1.36 4.26 16 21 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 22 H 0.07 1.39 7.89 -2.39 -0.02 1.37 16 23 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 24 H 0.18 5.46 8.06 -2.91 -0.02 5.44 16 25 H 0.05 2.50 8.03 -2.38 -0.02 2.48 16 26 H 0.10 4.84 4.45 -2.39 -0.01 4.83 16 27 H 0.26 13.14 8.32 -92.71 -0.77 12.36 16 28 H 0.10 4.20 8.10 -2.39 -0.02 4.18 16 29 H 0.08 3.44 6.96 -2.39 -0.02 3.42 16 30 H 0.10 3.58 8.14 -2.39 -0.02 3.57 16 31 H 0.10 3.48 8.14 -2.39 -0.02 3.46 16 32 H 0.06 2.64 8.01 -2.39 -0.02 2.62 16 33 H 0.06 2.33 7.66 -2.39 -0.02 2.31 16 34 H 0.11 2.84 7.82 -2.39 -0.02 2.82 16 35 H 0.07 2.96 6.89 -2.39 -0.02 2.94 16 Total: -1.00 -61.17 292.99 4.52 -56.65 By element: Atomic # 1 Polarization: 23.02 SS G_CDS: 1.07 Total: 24.09 kcal Atomic # 6 Polarization: -7.57 SS G_CDS: 6.85 Total: -0.72 kcal Atomic # 7 Polarization: -116.89 SS G_CDS: -5.40 Total: -122.29 kcal Atomic # 14 Polarization: 40.27 SS G_CDS: 2.00 Total: 42.27 kcal Total: -61.17 4.52 -56.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342798773.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.676 kcal (2) G-P(sol) polarization free energy of solvation -61.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds