Wall clock time and date at job start Sun Mar 29 2020 22:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52994 * 109.47103 * 2 1 4 4 N 1.46506 * 109.47133 * 180.02562 * 3 2 1 5 5 C 1.36936 * 119.99656 * 269.48803 * 4 3 2 6 6 H 1.08001 * 120.00611 * 325.98586 * 5 4 3 7 7 C 1.38814 * 119.99508 * 145.98426 * 5 4 3 8 8 N 1.31615 * 120.00230 * 336.70811 * 7 5 4 9 9 Si 1.86804 * 120.00052 * 156.70805 * 7 5 4 10 10 H 1.48504 * 109.46797 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47040 * 120.00113 * 9 7 5 12 12 H 1.48493 * 109.47277 * 240.00379 * 9 7 5 13 13 C 1.46501 * 120.00010 * 89.49232 * 4 3 2 14 14 C 1.50700 * 109.47249 * 90.00120 * 13 4 3 15 15 C 1.38614 * 120.45311 * 94.99583 * 14 13 4 16 16 C 1.38571 * 118.40632 * 180.02562 * 15 14 13 17 17 N 1.32355 * 119.10187 * 0.02562 * 16 15 14 18 18 C 1.31779 * 120.81870 * 359.97438 * 17 16 15 19 19 C 1.50703 * 119.12227 * 180.02562 * 18 17 16 20 20 N 1.31808 * 121.75481 * 359.72453 * 18 17 16 21 21 H 1.09008 * 109.47202 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47199 * 299.99885 * 1 2 3 23 23 H 1.08996 * 109.47108 * 60.00406 * 1 2 3 24 24 H 1.09005 * 109.47254 * 239.99628 * 2 1 3 25 25 H 1.09003 * 109.47140 * 120.00038 * 2 1 3 26 26 H 1.09000 * 109.47743 * 59.99991 * 3 2 1 27 27 H 1.09003 * 109.47429 * 299.99557 * 3 2 1 28 28 H 0.97006 * 120.00435 * 179.97438 * 8 7 5 29 29 H 1.09000 * 109.46746 * 210.00013 * 13 4 3 30 30 H 1.08999 * 109.46831 * 330.00106 * 13 4 3 31 31 H 1.08008 * 120.79696 * 0.02661 * 15 14 13 32 32 H 1.08001 * 120.45188 * 179.97438 * 16 15 14 33 33 H 1.09000 * 109.46966 * 90.00634 * 19 18 17 34 34 H 1.09000 * 109.47046 * 210.00538 * 19 18 17 35 35 H 1.09005 * 109.46851 * 330.00172 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1901 1.4529 1.1850 6 1 3.7891 1.9835 2.0359 7 6 5.4001 0.7813 1.2932 8 7 5.6775 -0.2112 0.4744 9 14 6.6349 1.2860 2.6009 10 1 6.0868 2.4200 3.3877 11 1 6.8958 0.1372 3.5050 12 1 7.9031 1.7018 1.9501 13 6 4.2370 1.4314 -1.2696 14 6 4.4880 2.8484 -1.7171 15 6 5.6852 3.4787 -1.4157 16 6 5.8709 4.7822 -1.8476 17 7 4.9052 5.3784 -2.5286 18 6 3.7797 4.7478 -2.7969 19 6 2.7058 5.4630 -3.5756 20 7 3.5704 3.5061 -2.4073 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.6766 1.9564 0.8899 27 1 1.6767 1.9563 -0.8900 28 1 6.5232 -0.6803 0.5498 29 1 5.1894 0.9187 -1.1351 30 1 3.6475 0.9110 -2.0245 31 1 6.4548 2.9661 -0.8576 32 1 6.7908 5.3049 -1.6307 33 1 2.8515 5.2868 -4.6414 34 1 1.7278 5.0869 -3.2755 35 1 2.7616 6.5326 -3.3732 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000350665713.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:42 Heat of formation + Delta-G solvation = 52.697067 kcal Electronic energy + Delta-G solvation = -16750.274162 eV Core-core repulsion = 14169.679639 eV Total energy + Delta-G solvation = -2580.594523 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.34571 -36.34158 -33.43259 -32.90049 -32.51542 -30.57759 -28.13116 -26.77020 -25.58985 -23.11884 -22.25665 -21.23037 -19.84780 -17.16715 -16.73944 -15.45533 -14.90145 -14.72218 -14.50577 -14.20683 -13.88029 -13.25766 -12.94233 -12.88865 -12.37783 -12.23638 -12.08917 -11.47068 -11.37522 -11.05085 -10.83920 -10.63398 -10.50329 -10.28229 -10.15002 -10.04816 -9.83379 -9.64512 -8.74989 -8.69281 -8.52896 -6.77916 -5.95043 -3.45556 1.57556 1.75027 3.25874 3.36544 3.39915 4.29100 4.42567 4.48595 4.73206 5.14936 5.30114 5.50057 5.64645 5.77674 5.77971 5.81372 5.83353 5.89608 6.01376 6.14480 6.23034 6.34859 6.44826 6.54470 6.65978 6.70720 6.82680 7.06706 7.10820 7.26498 7.40028 7.70906 7.74426 8.34770 8.77138 9.01936 9.65760 10.23172 11.06153 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.016785 B = 0.010828 C = 0.007158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.724472 B = 2585.334443 C = 3910.648614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.138 4.138 3 C 0.148 3.852 4 N -0.570 5.570 5 C -0.256 4.256 6 H 0.064 0.936 7 C 0.011 3.989 8 N -0.881 5.881 9 Si 0.892 3.108 10 H -0.276 1.276 11 H -0.288 1.288 12 H -0.285 1.285 13 C 0.181 3.819 14 C 0.184 3.816 15 C -0.215 4.215 16 C 0.133 3.867 17 N -0.542 5.542 18 C 0.296 3.704 19 C -0.077 4.077 20 N -0.519 5.519 21 H 0.042 0.958 22 H 0.046 0.954 23 H 0.045 0.955 24 H 0.052 0.948 25 H 0.062 0.938 26 H 0.040 0.960 27 H 0.043 0.957 28 H 0.257 0.743 29 H 0.119 0.881 30 H 0.048 0.952 31 H 0.141 0.859 32 H 0.157 0.843 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.126 5.372 -4.842 7.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.178 4.178 3 C 0.022 3.978 4 N -0.288 5.288 5 C -0.386 4.386 6 H 0.081 0.919 7 C -0.189 4.189 8 N -0.524 5.524 9 Si 0.721 3.279 10 H -0.200 1.200 11 H -0.214 1.214 12 H -0.212 1.212 13 C 0.054 3.946 14 C 0.035 3.965 15 C -0.238 4.238 16 C -0.031 4.031 17 N -0.259 5.259 18 C 0.028 3.972 19 C -0.136 4.136 20 N -0.235 5.235 21 H 0.062 0.938 22 H 0.065 0.935 23 H 0.065 0.935 24 H 0.071 0.929 25 H 0.081 0.919 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.136 0.864 30 H 0.066 0.934 31 H 0.159 0.841 32 H 0.174 0.826 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.704 5.699 -5.325 8.634 hybrid contribution 1.538 -0.189 1.298 2.021 sum -2.166 5.510 -4.028 7.160 Atomic orbital electron populations 1.21746 0.97675 1.00316 1.00748 1.22031 0.93146 1.00516 1.02067 1.20986 0.84353 0.93669 0.98772 1.43740 0.99847 1.83878 1.01384 1.19164 1.03121 1.25930 0.90344 0.91865 1.25076 1.00619 0.95049 0.98191 1.69970 1.23721 1.18956 1.39710 0.86391 0.81517 0.78449 0.81549 1.20044 1.21449 1.21166 1.20163 1.01681 0.85805 0.86989 1.23570 0.87122 1.00196 0.85620 1.22788 1.00785 0.97066 1.03148 1.23019 0.96870 0.92052 0.91189 1.68108 1.02444 1.38957 1.16343 1.23115 0.92056 0.88340 0.93646 1.20430 0.95169 0.99430 0.98563 1.68223 1.33577 1.08689 1.13014 0.93840 0.93488 0.93541 0.92934 0.91937 0.94175 0.93843 0.93286 0.86434 0.93405 0.84099 0.82609 0.90471 0.90160 0.90452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 9.91 37.16 0.37 -1.94 16 2 C -0.14 -2.71 6.26 -26.74 -0.17 -2.88 16 3 C 0.15 3.17 5.67 -4.04 -0.02 3.15 16 4 N -0.57 -13.82 2.43 -174.61 -0.43 -14.24 16 5 C -0.26 -6.70 9.48 -15.06 -0.14 -6.85 16 6 H 0.06 1.69 7.93 -52.49 -0.42 1.28 16 7 C 0.01 0.29 4.94 -17.43 -0.09 0.20 16 8 N -0.88 -23.64 11.34 55.49 0.63 -23.01 16 9 Si 0.89 20.48 29.61 -169.99 -5.03 15.45 16 10 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.29 -6.47 7.11 56.52 0.40 -6.06 16 13 C 0.18 4.19 5.65 -5.19 -0.03 4.17 16 14 C 0.18 3.95 6.41 -82.24 -0.53 3.42 16 15 C -0.21 -4.27 9.84 -39.32 -0.39 -4.65 16 16 C 0.13 2.35 11.30 -17.20 -0.19 2.15 16 17 N -0.54 -9.98 10.33 -10.73 -0.11 -10.09 16 18 C 0.30 5.46 7.64 -157.19 -1.20 4.26 16 19 C -0.08 -1.05 10.32 36.01 0.37 -0.68 16 20 N -0.52 -10.64 10.27 -6.99 -0.07 -10.72 16 21 H 0.04 0.62 8.14 -51.92 -0.42 0.20 16 22 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 25 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 26 H 0.04 0.86 8.04 -51.93 -0.42 0.44 16 27 H 0.04 0.91 8.08 -51.93 -0.42 0.49 16 28 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 29 H 0.12 2.96 5.25 -51.93 -0.27 2.69 16 30 H 0.05 1.09 8.07 -51.93 -0.42 0.67 16 31 H 0.14 2.79 8.06 -52.48 -0.42 2.36 16 32 H 0.16 2.17 8.06 -52.49 -0.42 1.74 16 33 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 35 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 299.67 15.07 4.52 4.52 Total: -1.00 -28.32 299.67 -7.82 -36.14 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -5.31 Total: 1.61 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: -2.02 Total: 0.34 kcal Atomic # 7 Polarization: -58.08 SS G_CDS: 0.02 Total: -58.06 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.03 Total: 15.45 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -28.32 -7.82 -36.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350665713.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.840 kcal (2) G-P(sol) polarization free energy of solvation -28.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds