Wall clock time and date at job start Sun Mar 29 2020 22:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52994 * 109.47103 * 2 1 4 4 N 1.46506 * 109.47133 * 180.02562 * 3 2 1 5 5 C 1.36936 * 119.99656 * 269.48803 * 4 3 2 6 6 H 1.08001 * 120.00611 * 325.98586 * 5 4 3 7 7 C 1.38814 * 119.99508 * 145.98426 * 5 4 3 8 8 N 1.31615 * 120.00230 * 336.70811 * 7 5 4 9 9 Si 1.86804 * 120.00052 * 156.70805 * 7 5 4 10 10 H 1.48504 * 109.46797 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47040 * 120.00113 * 9 7 5 12 12 H 1.48493 * 109.47277 * 240.00379 * 9 7 5 13 13 C 1.46501 * 120.00010 * 89.49232 * 4 3 2 14 14 C 1.50700 * 109.47249 * 90.00120 * 13 4 3 15 15 C 1.38614 * 120.45311 * 94.99583 * 14 13 4 16 16 C 1.38571 * 118.40632 * 180.02562 * 15 14 13 17 17 N 1.32355 * 119.10187 * 0.02562 * 16 15 14 18 18 C 1.31779 * 120.81870 * 359.97438 * 17 16 15 19 19 C 1.50703 * 119.12227 * 180.02562 * 18 17 16 20 20 N 1.31808 * 121.75481 * 359.72453 * 18 17 16 21 21 H 1.09008 * 109.47202 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47199 * 299.99885 * 1 2 3 23 23 H 1.08996 * 109.47108 * 60.00406 * 1 2 3 24 24 H 1.09005 * 109.47254 * 239.99628 * 2 1 3 25 25 H 1.09003 * 109.47140 * 120.00038 * 2 1 3 26 26 H 1.09000 * 109.47743 * 59.99991 * 3 2 1 27 27 H 1.09003 * 109.47429 * 299.99557 * 3 2 1 28 28 H 0.97006 * 120.00435 * 179.97438 * 8 7 5 29 29 H 1.09000 * 109.46746 * 210.00013 * 13 4 3 30 30 H 1.08999 * 109.46831 * 330.00106 * 13 4 3 31 31 H 1.08008 * 120.79696 * 0.02661 * 15 14 13 32 32 H 1.08001 * 120.45188 * 179.97438 * 16 15 14 33 33 H 1.09000 * 109.46966 * 90.00634 * 19 18 17 34 34 H 1.09000 * 109.47046 * 210.00538 * 19 18 17 35 35 H 1.09005 * 109.46851 * 330.00172 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1901 1.4529 1.1850 6 1 3.7891 1.9835 2.0359 7 6 5.4001 0.7813 1.2932 8 7 5.6775 -0.2112 0.4744 9 14 6.6349 1.2860 2.6009 10 1 6.0868 2.4200 3.3877 11 1 6.8958 0.1372 3.5050 12 1 7.9031 1.7018 1.9501 13 6 4.2370 1.4314 -1.2696 14 6 4.4880 2.8484 -1.7171 15 6 5.6852 3.4787 -1.4157 16 6 5.8709 4.7822 -1.8476 17 7 4.9052 5.3784 -2.5286 18 6 3.7797 4.7478 -2.7969 19 6 2.7058 5.4630 -3.5756 20 7 3.5704 3.5061 -2.4073 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.6766 1.9564 0.8899 27 1 1.6767 1.9563 -0.8900 28 1 6.5232 -0.6803 0.5498 29 1 5.1894 0.9187 -1.1351 30 1 3.6475 0.9110 -2.0245 31 1 6.4548 2.9661 -0.8576 32 1 6.7908 5.3049 -1.6307 33 1 2.8515 5.2868 -4.6414 34 1 1.7278 5.0869 -3.2755 35 1 2.7616 6.5326 -3.3732 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000350665713.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:42 Heat of formation + Delta-G solvation = 37.326331 kcal Electronic energy + Delta-G solvation = -16750.940687 eV Core-core repulsion = 14169.679639 eV Total energy + Delta-G solvation = -2581.261048 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.84016 -38.12285 -34.98399 -34.50803 -34.07809 -32.34151 -29.45435 -28.44633 -27.36111 -24.69621 -23.81845 -22.80657 -21.56235 -18.97062 -18.31397 -17.01442 -16.76375 -16.28387 -16.02478 -15.80560 -15.59334 -14.92106 -14.57035 -14.23766 -13.84976 -13.43860 -13.30845 -13.15155 -13.02090 -12.76180 -12.55211 -12.31874 -12.24037 -11.97736 -11.82731 -11.71287 -11.44545 -11.31512 -10.62374 -10.21625 -10.12552 -8.70197 -7.91445 -5.46819 0.09327 0.22557 1.42712 1.48171 1.57180 2.47251 2.84369 3.12285 3.20789 3.33828 3.70629 3.84944 4.24256 4.26380 4.32340 4.46183 4.54713 4.65638 4.69541 4.76153 4.78091 4.82324 4.94034 5.09869 5.12900 5.22872 5.25969 5.43653 5.47616 5.57849 5.65540 5.71889 6.21038 6.39403 7.06594 7.27220 7.74235 8.29080 9.07736 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.016785 B = 0.010828 C = 0.007158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.724472 B = 2585.334443 C = 3910.648614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.149 3.851 4 N -0.584 5.584 5 C -0.269 4.269 6 H 0.052 0.948 7 C -0.024 4.024 8 N -0.907 5.907 9 Si 0.949 3.051 10 H -0.275 1.275 11 H -0.291 1.291 12 H -0.278 1.278 13 C 0.190 3.810 14 C 0.168 3.832 15 C -0.232 4.232 16 C 0.146 3.854 17 N -0.544 5.544 18 C 0.289 3.711 19 C -0.074 4.074 20 N -0.536 5.536 21 H 0.059 0.941 22 H 0.055 0.945 23 H 0.059 0.941 24 H 0.038 0.962 25 H 0.035 0.965 26 H 0.037 0.963 27 H 0.048 0.952 28 H 0.257 0.743 29 H 0.096 0.904 30 H 0.041 0.959 31 H 0.136 0.864 32 H 0.197 0.803 33 H 0.097 0.903 34 H 0.086 0.914 35 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.421 6.995 -5.305 9.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.168 4.168 3 C 0.024 3.976 4 N -0.304 5.304 5 C -0.399 4.399 6 H 0.070 0.930 7 C -0.222 4.222 8 N -0.550 5.550 9 Si 0.776 3.224 10 H -0.200 1.200 11 H -0.218 1.218 12 H -0.204 1.204 13 C 0.063 3.937 14 C 0.020 3.980 15 C -0.254 4.254 16 C -0.019 4.019 17 N -0.260 5.260 18 C 0.021 3.979 19 C -0.132 4.132 20 N -0.252 5.252 21 H 0.078 0.922 22 H 0.074 0.926 23 H 0.078 0.922 24 H 0.057 0.943 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.114 0.886 30 H 0.059 0.941 31 H 0.154 0.846 32 H 0.214 0.786 33 H 0.116 0.884 34 H 0.105 0.895 35 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -4.018 7.331 -5.803 10.176 hybrid contribution 1.605 -0.636 1.367 2.202 sum -2.413 6.694 -4.436 8.385 Atomic orbital electron populations 1.21654 0.94133 1.01800 1.01880 1.21878 0.96194 0.98758 0.99983 1.21037 0.83193 0.94678 0.98736 1.43889 1.00858 1.84449 1.01183 1.19223 1.03870 1.25947 0.90895 0.93031 1.25627 1.01686 0.94898 0.99977 1.70069 1.23973 1.19784 1.41160 0.85526 0.79703 0.77766 0.79379 1.19980 1.21763 1.20388 1.19871 1.00255 0.87083 0.86502 1.23233 0.88399 0.99490 0.86914 1.22805 1.00268 0.98297 1.04079 1.23613 0.97903 0.91067 0.89301 1.68278 1.02601 1.38748 1.16363 1.24037 0.93068 0.87781 0.92970 1.20590 0.93785 0.99872 0.98996 1.68212 1.33563 1.09867 1.13593 0.92214 0.92574 0.92151 0.94309 0.94647 0.94478 0.93329 0.93387 0.88614 0.94077 0.84646 0.78605 0.88415 0.89535 0.88668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.09 9.91 71.98 0.71 -3.37 16 2 C -0.13 -5.10 6.26 30.59 0.19 -4.91 16 3 C 0.15 6.44 5.67 86.38 0.49 6.93 16 4 N -0.58 -28.99 2.43 -706.33 -1.72 -30.71 16 5 C -0.27 -14.41 9.48 84.03 0.80 -13.61 16 6 H 0.05 2.83 7.93 -2.91 -0.02 2.80 16 7 C -0.02 -1.24 4.94 84.86 0.42 -0.82 16 8 N -0.91 -49.75 11.34 21.65 0.25 -49.51 16 9 Si 0.95 42.42 29.61 68.60 2.03 44.45 16 10 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 11 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 12 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 13 C 0.19 9.06 5.65 85.63 0.48 9.55 16 14 C 0.17 7.23 6.41 42.57 0.27 7.51 16 15 C -0.23 -9.08 9.84 22.44 0.22 -8.86 16 16 C 0.15 4.82 11.30 84.69 0.96 5.78 16 17 N -0.54 -18.64 10.33 -187.85 -1.94 -20.58 16 18 C 0.29 10.06 7.64 138.75 1.06 11.12 16 19 C -0.07 -1.80 10.32 71.24 0.74 -1.07 16 20 N -0.54 -21.58 10.27 -176.01 -1.81 -23.39 16 21 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 22 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 23 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 24 H 0.04 1.61 8.14 -2.38 -0.02 1.60 16 25 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.04 1.60 8.04 -2.39 -0.02 1.58 16 27 H 0.05 2.02 8.08 -2.39 -0.02 2.01 16 28 H 0.26 13.51 8.31 -92.70 -0.77 12.74 16 29 H 0.10 5.01 5.25 -2.39 -0.01 5.00 16 30 H 0.04 1.94 8.07 -2.39 -0.02 1.92 16 31 H 0.14 5.38 8.06 -2.91 -0.02 5.36 16 32 H 0.20 4.74 8.06 -2.91 -0.02 4.72 16 33 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.09 2.00 8.14 -2.39 -0.02 1.99 16 35 H 0.09 1.98 8.14 -2.38 -0.02 1.97 16 Total: -1.00 -60.88 299.67 4.20 -56.68 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: 1.05 Total: 14.82 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: 6.34 Total: 8.24 kcal Atomic # 7 Polarization: -118.96 SS G_CDS: -5.22 Total: -124.19 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Total: -60.88 4.20 -56.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350665713.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.001 kcal (2) G-P(sol) polarization free energy of solvation -60.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds