Wall clock time and date at job start Sun Mar 29 2020 21:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31791 * 119.12629 * 2 1 4 4 C 1.32337 * 120.82168 * 179.97438 * 3 2 1 5 5 C 1.38595 * 119.09882 * 0.02562 * 4 3 2 6 6 C 1.50706 * 120.79638 * 180.02562 * 5 4 3 7 7 N 1.46906 * 109.46929 * 90.00114 * 6 5 4 8 8 C 1.46898 * 110.99888 * 66.04676 * 7 6 5 9 9 C 1.46902 * 110.99573 * 190.00042 * 7 6 5 10 10 H 1.09005 * 109.47428 * 55.00152 * 9 7 6 11 11 C 1.52998 * 109.47449 * 294.99873 * 9 7 6 12 12 C 1.50700 * 109.46520 * 174.99924 * 9 7 6 13 13 H 1.07997 * 120.00735 * 359.97438 * 12 9 7 14 14 C 1.37887 * 119.99903 * 179.97438 * 12 9 7 15 15 N 1.31518 * 119.99537 * 0.02562 * 14 12 9 16 16 Si 1.86797 * 120.00159 * 179.97438 * 14 12 9 17 17 H 1.48504 * 109.46664 * 90.00277 * 16 14 12 18 18 H 1.48494 * 109.47037 * 209.99998 * 16 14 12 19 19 H 1.48494 * 109.47236 * 330.00472 * 16 14 12 20 20 C 1.38594 * 118.40623 * 0.27206 * 5 4 3 21 21 N 1.31794 * 119.12026 * 179.97438 * 2 1 3 22 22 H 1.09001 * 109.47009 * 89.99814 * 1 2 3 23 23 H 1.08999 * 109.46942 * 209.99798 * 1 2 3 24 24 H 1.08994 * 109.46706 * 329.99963 * 1 2 3 25 25 H 1.07998 * 120.44528 * 179.97438 * 4 3 2 26 26 H 1.08998 * 109.46946 * 330.00340 * 6 5 4 27 27 H 1.09000 * 109.47319 * 210.00140 * 6 5 4 28 28 H 1.08997 * 109.47334 * 60.00212 * 8 7 6 29 29 H 1.09000 * 109.46674 * 180.02562 * 8 7 6 30 30 H 1.08995 * 109.47296 * 299.99911 * 8 7 6 31 31 H 1.08999 * 109.47381 * 180.02562 * 11 9 7 32 32 H 1.09005 * 109.47033 * 300.00521 * 11 9 7 33 33 H 1.08995 * 109.47107 * 59.99993 * 11 9 7 34 34 H 0.97005 * 119.99442 * 180.02562 * 15 14 12 35 35 H 1.07998 * 120.44725 * 179.72335 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1485 1.1513 0.0000 4 6 3.4713 1.1904 0.0005 5 6 4.1808 -0.0001 0.0005 6 6 5.6879 -0.0002 0.0017 7 7 6.1765 -0.0009 1.3871 8 6 5.8264 -1.2545 2.0681 9 6 7.6253 0.2372 1.4344 10 1 7.8590 1.1621 0.9070 11 6 8.3560 -0.9293 0.7665 12 6 8.0688 0.3518 2.8701 13 1 7.3467 0.2577 3.6676 14 6 9.3967 0.5769 3.1656 15 7 10.2760 0.6921 2.1944 16 14 9.9463 0.7197 4.9451 17 1 10.3170 -0.6238 5.4579 18 1 11.1218 1.6232 5.0291 19 1 8.8372 1.2730 5.7629 20 6 3.4712 -1.1906 -0.0058 21 7 2.1484 -1.1514 0.0005 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3632 0.8900 0.5138 25 1 3.9907 2.1373 0.0001 26 1 6.0516 0.8900 -0.5114 27 1 6.0516 -0.8899 -0.5123 28 1 6.2768 -2.0938 1.5383 29 1 6.1996 -1.2282 3.0919 30 1 4.7428 -1.3714 2.0796 31 1 9.4310 -0.7529 0.8020 32 1 8.1223 -1.8542 1.2939 33 1 8.0352 -1.0123 -0.2719 34 1 11.2103 0.8500 2.4023 35 1 3.9907 -2.1374 -0.0105 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351893393.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:35 Heat of formation + Delta-G solvation = 50.925248 kcal Electronic energy + Delta-G solvation = -16460.077659 eV Core-core repulsion = 13879.406305 eV Total energy + Delta-G solvation = -2580.671355 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.93414 -37.42297 -33.82202 -33.53990 -32.34191 -29.70105 -28.22513 -26.27540 -25.25809 -24.42365 -23.53027 -21.56028 -19.30420 -17.52696 -16.54872 -16.27337 -15.52092 -14.94824 -14.37907 -14.28546 -13.66406 -13.37972 -13.17416 -12.90442 -12.60357 -12.52119 -12.40061 -11.65477 -11.22106 -11.16632 -10.98152 -10.80129 -10.61540 -10.60056 -10.54212 -10.08292 -9.89443 -9.11632 -9.05338 -8.88825 -8.44206 -7.28294 -6.06319 -4.10294 1.05529 1.24971 3.27985 3.35049 3.39168 3.85309 4.07125 4.28465 4.38186 4.82906 4.95006 5.07215 5.21863 5.27151 5.40568 5.47930 5.48867 5.84768 5.86811 6.01669 6.12555 6.19156 6.32356 6.56662 6.60459 6.74527 6.81351 7.02669 7.12965 7.37769 7.63890 7.75885 8.01494 8.22811 8.28985 8.49632 8.95130 9.55029 11.00700 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.046175 B = 0.005370 C = 0.005214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.248244 B = 5212.542070 C = 5368.516884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.297 3.703 3 N -0.522 5.522 4 C 0.165 3.835 5 C -0.168 4.168 6 C 0.096 3.904 7 N -0.530 5.530 8 C 0.032 3.968 9 C 0.211 3.789 10 H 0.041 0.959 11 C -0.173 4.173 12 C -0.501 4.501 13 H 0.062 0.938 14 C 0.059 3.941 15 N -0.894 5.894 16 Si 0.896 3.104 17 H -0.282 1.282 18 H -0.287 1.287 19 H -0.274 1.274 20 C 0.151 3.849 21 N -0.523 5.523 22 H 0.081 0.919 23 H 0.082 0.918 24 H 0.082 0.918 25 H 0.169 0.831 26 H 0.082 0.918 27 H 0.042 0.958 28 H 0.019 0.981 29 H 0.077 0.923 30 H 0.038 0.962 31 H 0.089 0.911 32 H 0.031 0.969 33 H 0.008 0.992 34 H 0.261 0.739 35 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.328 -2.344 -5.243 13.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.030 3.970 3 N -0.236 5.236 4 C -0.001 4.001 5 C -0.172 4.172 6 C -0.033 4.033 7 N -0.253 5.253 8 C -0.117 4.117 9 C 0.105 3.895 10 H 0.059 0.941 11 C -0.233 4.233 12 C -0.540 4.540 13 H 0.081 0.919 14 C -0.142 4.142 15 N -0.533 5.533 16 Si 0.724 3.276 17 H -0.208 1.208 18 H -0.212 1.212 19 H -0.198 1.198 20 C -0.016 4.016 21 N -0.237 5.237 22 H 0.099 0.901 23 H 0.100 0.900 24 H 0.101 0.899 25 H 0.186 0.814 26 H 0.100 0.900 27 H 0.060 0.940 28 H 0.038 0.962 29 H 0.096 0.904 30 H 0.057 0.943 31 H 0.108 0.892 32 H 0.050 0.950 33 H 0.027 0.973 34 H 0.071 0.929 35 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -13.358 -1.908 -5.006 14.392 hybrid contribution 1.922 -0.656 0.527 2.099 sum -11.436 -2.564 -4.479 12.546 Atomic orbital electron populations 1.20489 0.86186 1.03832 1.03415 1.23147 0.98008 0.83796 0.92071 1.68248 1.10268 1.30393 1.14654 1.23145 0.88926 0.98675 0.89389 1.21780 0.99331 0.95166 1.00972 1.20895 0.87586 1.01713 0.93125 1.62429 1.18527 1.33470 1.10907 1.22286 0.98004 0.90589 1.00790 1.19351 0.79186 0.94017 0.96923 0.94072 1.22419 1.05740 0.99571 0.95522 1.21094 0.92871 1.48594 0.91439 0.91939 1.24919 0.96638 0.95283 0.97347 1.69882 1.02513 1.49734 1.31170 0.86517 0.78232 0.77872 0.84931 1.20800 1.21245 1.19847 1.23114 0.89318 0.98415 0.90704 1.68215 1.10062 1.30550 1.14845 0.90080 0.89963 0.89897 0.81389 0.90002 0.94010 0.96233 0.90448 0.94292 0.89221 0.95040 0.97318 0.92948 0.82056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.83 10.32 36.01 0.37 -0.45 16 2 C 0.30 4.29 7.64 -157.20 -1.20 3.09 16 3 N -0.52 -8.00 10.33 -10.73 -0.11 -8.11 16 4 C 0.16 2.48 11.01 -17.20 -0.19 2.29 16 5 C -0.17 -2.57 4.89 -104.36 -0.51 -3.08 16 6 C 0.10 1.61 4.60 -4.97 -0.02 1.59 16 7 N -0.53 -10.77 4.73 -237.73 -1.13 -11.89 16 8 C 0.03 0.60 8.41 60.06 0.51 1.11 16 9 C 0.21 5.05 2.34 -68.86 -0.16 4.89 16 10 H 0.04 1.08 8.03 -51.93 -0.42 0.66 16 11 C -0.17 -3.98 8.28 37.16 0.31 -3.67 16 12 C -0.50 -13.29 7.88 -34.44 -0.27 -13.56 16 13 H 0.06 1.68 6.77 -52.49 -0.36 1.32 16 14 C 0.06 1.59 5.30 -17.81 -0.09 1.50 16 15 N -0.89 -24.77 11.32 55.43 0.63 -24.14 16 16 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 19 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 20 C 0.15 2.22 9.34 -17.20 -0.16 2.06 16 21 N -0.52 -7.90 10.33 -10.72 -0.11 -8.01 16 22 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.17 2.24 8.06 -52.49 -0.42 1.82 16 26 H 0.08 1.33 7.96 -51.93 -0.41 0.92 16 27 H 0.04 0.68 6.90 -51.93 -0.36 0.32 16 28 H 0.02 0.36 6.51 -51.93 -0.34 0.02 16 29 H 0.08 1.60 6.42 -51.93 -0.33 1.27 16 30 H 0.04 0.67 6.20 -51.93 -0.32 0.35 16 31 H 0.09 2.30 6.07 -51.93 -0.32 1.99 16 32 H 0.03 0.70 6.48 -51.93 -0.34 0.37 16 33 H 0.01 0.16 6.75 -51.93 -0.35 -0.19 16 34 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 35 H 0.16 2.08 8.06 -52.49 -0.42 1.66 16 LS Contribution 284.52 15.07 4.29 4.29 Total: -1.00 -28.85 284.52 -7.67 -36.52 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: -4.79 Total: -0.34 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: -1.43 Total: -4.26 kcal Atomic # 7 Polarization: -51.43 SS G_CDS: -0.72 Total: -52.15 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -28.85 -7.67 -36.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351893393.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.441 kcal (2) G-P(sol) polarization free energy of solvation -28.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds