Wall clock time and date at job start Sun Mar 29 2020 21:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31791 * 119.12629 * 2 1 4 4 C 1.32337 * 120.82168 * 179.97438 * 3 2 1 5 5 C 1.38595 * 119.09882 * 0.02562 * 4 3 2 6 6 C 1.50706 * 120.79638 * 180.02562 * 5 4 3 7 7 N 1.46906 * 109.46929 * 90.00114 * 6 5 4 8 8 C 1.46898 * 110.99888 * 66.04676 * 7 6 5 9 9 C 1.46902 * 110.99573 * 190.00042 * 7 6 5 10 10 H 1.09005 * 109.47428 * 55.00152 * 9 7 6 11 11 C 1.52998 * 109.47449 * 294.99873 * 9 7 6 12 12 C 1.50700 * 109.46520 * 174.99924 * 9 7 6 13 13 H 1.07997 * 120.00735 * 359.97438 * 12 9 7 14 14 C 1.37887 * 119.99903 * 179.97438 * 12 9 7 15 15 N 1.31518 * 119.99537 * 0.02562 * 14 12 9 16 16 Si 1.86797 * 120.00159 * 179.97438 * 14 12 9 17 17 H 1.48504 * 109.46664 * 90.00277 * 16 14 12 18 18 H 1.48494 * 109.47037 * 209.99998 * 16 14 12 19 19 H 1.48494 * 109.47236 * 330.00472 * 16 14 12 20 20 C 1.38594 * 118.40623 * 0.27206 * 5 4 3 21 21 N 1.31794 * 119.12026 * 179.97438 * 2 1 3 22 22 H 1.09001 * 109.47009 * 89.99814 * 1 2 3 23 23 H 1.08999 * 109.46942 * 209.99798 * 1 2 3 24 24 H 1.08994 * 109.46706 * 329.99963 * 1 2 3 25 25 H 1.07998 * 120.44528 * 179.97438 * 4 3 2 26 26 H 1.08998 * 109.46946 * 330.00340 * 6 5 4 27 27 H 1.09000 * 109.47319 * 210.00140 * 6 5 4 28 28 H 1.08997 * 109.47334 * 60.00212 * 8 7 6 29 29 H 1.09000 * 109.46674 * 180.02562 * 8 7 6 30 30 H 1.08995 * 109.47296 * 299.99911 * 8 7 6 31 31 H 1.08999 * 109.47381 * 180.02562 * 11 9 7 32 32 H 1.09005 * 109.47033 * 300.00521 * 11 9 7 33 33 H 1.08995 * 109.47107 * 59.99993 * 11 9 7 34 34 H 0.97005 * 119.99442 * 180.02562 * 15 14 12 35 35 H 1.07998 * 120.44725 * 179.72335 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1485 1.1513 0.0000 4 6 3.4713 1.1904 0.0005 5 6 4.1808 -0.0001 0.0005 6 6 5.6879 -0.0002 0.0017 7 7 6.1765 -0.0009 1.3871 8 6 5.8264 -1.2545 2.0681 9 6 7.6253 0.2372 1.4344 10 1 7.8590 1.1621 0.9070 11 6 8.3560 -0.9293 0.7665 12 6 8.0688 0.3518 2.8701 13 1 7.3467 0.2577 3.6676 14 6 9.3967 0.5769 3.1656 15 7 10.2760 0.6921 2.1944 16 14 9.9463 0.7197 4.9451 17 1 10.3170 -0.6238 5.4579 18 1 11.1218 1.6232 5.0291 19 1 8.8372 1.2730 5.7629 20 6 3.4712 -1.1906 -0.0058 21 7 2.1484 -1.1514 0.0005 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3632 0.8900 0.5138 25 1 3.9907 2.1373 0.0001 26 1 6.0516 0.8900 -0.5114 27 1 6.0516 -0.8899 -0.5123 28 1 6.2768 -2.0938 1.5383 29 1 6.1996 -1.2282 3.0919 30 1 4.7428 -1.3714 2.0796 31 1 9.4310 -0.7529 0.8020 32 1 8.1223 -1.8542 1.2939 33 1 8.0352 -1.0123 -0.2719 34 1 11.2103 0.8500 2.4023 35 1 3.9907 -2.1374 -0.0105 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351893393.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:34 Heat of formation + Delta-G solvation = 32.400770 kcal Electronic energy + Delta-G solvation = -16460.880941 eV Core-core repulsion = 13879.406305 eV Total energy + Delta-G solvation = -2581.474636 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.07388 -39.02858 -35.35338 -34.67770 -33.95569 -31.08484 -29.75422 -27.69830 -27.14935 -25.60127 -24.96730 -22.86571 -21.02399 -18.67301 -18.24595 -17.61801 -17.13734 -16.38239 -15.88443 -15.81120 -15.20691 -14.57655 -14.48460 -14.31764 -14.12133 -13.47512 -13.45083 -13.18144 -12.96722 -12.84456 -12.63025 -12.56658 -12.28735 -12.09185 -12.01335 -11.76145 -11.54069 -10.91694 -10.48412 -10.21654 -10.20082 -8.88783 -8.10243 -6.20300 -0.08740 0.10198 1.42419 1.44491 1.54059 2.43314 2.71401 3.07355 3.19599 3.20641 3.49269 3.71167 3.83871 3.95192 4.34972 4.51876 4.55098 4.67666 4.69811 4.74610 4.78078 4.85574 4.92504 5.05884 5.08771 5.15921 5.17181 5.50917 5.55504 5.71832 5.79906 5.99425 6.18498 6.45505 6.70109 6.92443 7.10463 7.48779 8.95511 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.046175 B = 0.005370 C = 0.005214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.248244 B = 5212.542070 C = 5368.516884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.291 3.709 3 N -0.536 5.536 4 C 0.160 3.840 5 C -0.178 4.178 6 C 0.103 3.897 7 N -0.541 5.541 8 C 0.040 3.960 9 C 0.216 3.784 10 H 0.013 0.987 11 C -0.160 4.160 12 C -0.515 4.515 13 H 0.054 0.946 14 C 0.015 3.985 15 N -0.918 5.918 16 Si 0.954 3.046 17 H -0.277 1.277 18 H -0.284 1.284 19 H -0.272 1.272 20 C 0.152 3.848 21 N -0.534 5.534 22 H 0.099 0.901 23 H 0.093 0.907 24 H 0.091 0.909 25 H 0.179 0.821 26 H 0.082 0.918 27 H 0.050 0.950 28 H 0.027 0.973 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.032 0.968 33 H 0.031 0.969 34 H 0.261 0.739 35 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.624 -2.888 -5.234 14.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.024 3.976 3 N -0.250 5.250 4 C -0.006 4.006 5 C -0.182 4.182 6 C -0.026 4.026 7 N -0.265 5.265 8 C -0.108 4.108 9 C 0.109 3.891 10 H 0.031 0.969 11 C -0.219 4.219 12 C -0.553 4.553 13 H 0.072 0.928 14 C -0.184 4.184 15 N -0.558 5.558 16 Si 0.781 3.219 17 H -0.202 1.202 18 H -0.210 1.210 19 H -0.197 1.197 20 C -0.014 4.014 21 N -0.248 5.248 22 H 0.117 0.883 23 H 0.111 0.889 24 H 0.110 0.890 25 H 0.196 0.804 26 H 0.101 0.899 27 H 0.068 0.932 28 H 0.045 0.955 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.051 0.949 33 H 0.050 0.950 34 H 0.070 0.930 35 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -14.676 -2.456 -5.001 15.698 hybrid contribution 2.234 -0.480 0.480 2.335 sum -12.442 -2.936 -4.521 13.559 Atomic orbital electron populations 1.20642 0.83446 1.04812 1.04843 1.23962 0.99761 0.83394 0.90526 1.68343 1.10261 1.30936 1.15484 1.23389 0.89222 0.99188 0.88792 1.21585 0.98247 0.95683 1.02689 1.20829 0.88574 1.02160 0.91005 1.62269 1.16191 1.34520 1.13492 1.22193 0.99026 0.90185 0.99435 1.19086 0.81569 0.93123 0.95288 0.96864 1.22215 1.03669 0.99132 0.96901 1.21366 0.92945 1.48384 0.92651 0.92785 1.25613 0.96823 0.95157 1.00815 1.69999 1.02648 1.50415 1.32752 0.85608 0.77664 0.77911 0.80742 1.20246 1.21013 1.19726 1.23407 0.89465 0.98869 0.89648 1.68329 1.10123 1.30846 1.15540 0.88277 0.88866 0.89002 0.80431 0.89929 0.93152 0.95484 0.92634 0.92464 0.92066 0.94908 0.95000 0.92988 0.80380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.42 10.32 71.24 0.74 -0.68 16 2 C 0.29 7.79 7.64 138.75 1.06 8.85 16 3 N -0.54 -15.57 10.33 -187.85 -1.94 -17.51 16 4 C 0.16 4.61 11.01 84.70 0.93 5.55 16 5 C -0.18 -5.16 4.89 -19.69 -0.10 -5.26 16 6 C 0.10 3.32 4.60 85.56 0.39 3.71 16 7 N -0.54 -21.62 4.73 -906.03 -4.29 -25.91 16 8 C 0.04 1.47 8.41 127.69 1.07 2.54 16 9 C 0.22 10.38 2.34 44.17 0.10 10.48 16 10 H 0.01 0.71 8.03 -2.38 -0.02 0.70 16 11 C -0.16 -7.28 8.28 71.98 0.60 -6.69 16 12 C -0.51 -27.47 7.88 25.60 0.20 -27.27 16 13 H 0.05 2.92 6.77 -2.91 -0.02 2.90 16 14 C 0.01 0.79 5.30 84.66 0.45 1.24 16 15 N -0.92 -51.37 11.32 21.45 0.24 -51.12 16 16 Si 0.95 43.06 29.54 68.60 2.03 45.08 16 17 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 18 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 19 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 20 C 0.15 4.16 9.34 84.70 0.79 4.95 16 21 N -0.53 -15.00 10.33 -187.84 -1.94 -16.94 16 22 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 23 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 24 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.18 4.59 8.06 -2.91 -0.02 4.57 16 26 H 0.08 2.62 7.96 -2.39 -0.02 2.60 16 27 H 0.05 1.54 6.90 -2.39 -0.02 1.52 16 28 H 0.03 0.94 6.51 -2.39 -0.02 0.93 16 29 H 0.05 2.27 6.42 -2.39 -0.02 2.26 16 30 H 0.06 1.88 6.20 -2.39 -0.01 1.86 16 31 H 0.06 3.16 6.07 -2.39 -0.01 3.15 16 32 H 0.03 1.44 6.48 -2.38 -0.02 1.42 16 33 H 0.03 1.26 6.75 -2.39 -0.02 1.24 16 34 H 0.26 13.96 8.31 -92.70 -0.77 13.19 16 35 H 0.18 4.13 8.06 -2.91 -0.02 4.11 16 Total: -1.00 -60.46 284.52 1.42 -59.04 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: 1.08 Total: 9.94 kcal Atomic # 6 Polarization: -8.82 SS G_CDS: 6.24 Total: -2.58 kcal Atomic # 7 Polarization: -103.56 SS G_CDS: -7.93 Total: -111.49 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.08 kcal Total: -60.46 1.42 -59.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351893393.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.445 kcal (2) G-P(sol) polarization free energy of solvation -60.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds