Wall clock time and date at job start Sun Mar 29 2020 21:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31794 * 119.12099 * 2 1 4 4 C 1.32336 * 120.82258 * 179.97438 * 3 2 1 5 5 C 1.38597 * 119.10202 * 359.97438 * 4 3 2 6 6 C 1.50701 * 120.80209 * 180.02562 * 5 4 3 7 7 N 1.46902 * 109.46840 * 89.99792 * 6 5 4 8 8 C 1.46894 * 111.00056 * 293.95552 * 7 6 5 9 9 C 1.46904 * 110.99898 * 170.00160 * 7 6 5 10 10 H 1.09005 * 109.47066 * 309.99638 * 9 7 6 11 11 C 1.52998 * 109.47316 * 70.00014 * 9 7 6 12 12 C 1.50700 * 109.47241 * 190.00177 * 9 7 6 13 13 H 1.08004 * 120.00020 * 354.52748 * 12 9 7 14 14 C 1.37878 * 120.00180 * 174.52923 * 12 9 7 15 15 N 1.31505 * 119.99935 * 160.59502 * 14 12 9 16 16 Si 1.86796 * 119.99790 * 340.86338 * 14 12 9 17 17 H 1.48503 * 109.47098 * 179.72449 * 16 14 12 18 18 H 1.48501 * 109.47418 * 299.73090 * 16 14 12 19 19 H 1.48505 * 109.47038 * 59.73082 * 16 14 12 20 20 C 1.38602 * 118.40113 * 0.27284 * 5 4 3 21 21 N 1.31793 * 119.12693 * 179.97438 * 2 1 3 22 22 H 1.08995 * 109.46847 * 90.00502 * 1 2 3 23 23 H 1.09000 * 109.46690 * 209.99824 * 1 2 3 24 24 H 1.08991 * 109.47099 * 329.99969 * 1 2 3 25 25 H 1.08001 * 120.45219 * 180.02562 * 4 3 2 26 26 H 1.09001 * 109.47106 * 329.99992 * 6 5 4 27 27 H 1.08996 * 109.47432 * 209.99707 * 6 5 4 28 28 H 1.09005 * 109.47299 * 296.04655 * 8 7 6 29 29 H 1.08998 * 109.47542 * 56.04896 * 8 7 6 30 30 H 1.09007 * 109.47016 * 176.05009 * 8 7 6 31 31 H 1.09001 * 109.46973 * 65.13199 * 11 9 7 32 32 H 1.08997 * 109.47409 * 185.13274 * 11 9 7 33 33 H 1.09008 * 109.46955 * 305.13432 * 11 9 7 34 34 H 0.97002 * 120.00628 * 2.36607 * 15 14 12 35 35 H 1.08001 * 120.45291 * 179.73069 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1484 1.1513 0.0000 4 6 3.4712 1.1906 0.0005 5 6 4.1809 0.0002 0.0016 6 6 5.6879 0.0002 0.0028 7 7 6.1764 0.0009 1.3882 8 6 5.8263 1.2545 2.0692 9 6 7.6253 -0.2372 1.4356 10 1 7.8695 -1.1128 0.8341 11 6 8.3612 0.9841 0.8809 12 6 8.0490 -0.4739 2.8623 13 1 7.3335 -0.3629 3.6637 14 6 9.3502 -0.8321 3.1446 15 7 9.8276 -0.6714 4.3594 16 14 10.4371 -1.5386 1.7998 17 1 11.7825 -1.8339 2.3548 18 1 9.8305 -2.7903 1.2795 19 1 10.5625 -0.5532 0.6959 20 6 3.4713 -1.1904 -0.0037 21 7 2.1485 -1.1513 0.0005 22 1 -0.3633 -0.0001 -1.0276 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3633 0.8899 0.5138 25 1 3.9906 2.1375 0.0009 26 1 6.0516 0.8900 -0.5112 27 1 6.0517 -0.8899 -0.5103 28 1 6.3334 2.0869 1.5814 29 1 4.7481 1.4063 2.0193 30 1 6.1377 1.2004 3.1125 31 1 8.1900 1.8394 1.5347 32 1 9.4294 0.7730 0.8311 33 1 7.9885 1.2101 -0.1182 34 1 9.2544 -0.3331 5.0650 35 1 3.9908 -2.1372 -0.0074 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351893394.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:37 Heat of formation + Delta-G solvation = 52.379790 kcal Electronic energy + Delta-G solvation = -16507.073974 eV Core-core repulsion = 13926.465694 eV Total energy + Delta-G solvation = -2580.608281 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.01665 -37.62854 -33.89220 -33.61573 -32.38958 -30.09150 -28.63664 -26.37426 -25.09025 -24.47829 -23.44895 -21.50595 -19.23136 -17.61220 -17.37435 -16.62443 -15.61688 -14.98785 -14.73930 -14.01443 -13.75981 -13.47500 -13.23727 -13.03685 -12.67063 -12.59588 -12.45001 -12.05224 -11.61312 -11.45961 -11.09916 -11.05770 -10.68320 -10.57093 -10.41546 -9.90162 -9.80593 -9.14249 -9.12826 -8.99635 -8.20391 -7.46582 -6.49022 -4.06265 0.97163 1.17564 3.33145 3.40275 3.56641 3.77462 4.00457 4.21344 4.46101 4.73858 4.77874 4.95531 5.07460 5.23836 5.32397 5.42893 5.44075 5.72151 5.78079 5.88237 5.95330 6.06461 6.16895 6.25597 6.33819 6.50683 6.56906 6.60873 6.88531 7.04936 7.17752 7.62143 7.91562 8.15724 8.23559 8.40830 8.94981 9.60446 10.91737 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.047328 B = 0.005596 C = 0.005543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.475239 B = 5002.215120 C = 5050.611352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.300 3.700 3 N -0.522 5.522 4 C 0.151 3.849 5 C -0.171 4.171 6 C 0.092 3.908 7 N -0.520 5.520 8 C 0.033 3.967 9 C 0.188 3.812 10 H 0.032 0.968 11 C -0.187 4.187 12 C -0.588 4.588 13 H 0.063 0.937 14 C 0.031 3.969 15 N -0.904 5.904 16 Si 1.042 2.958 17 H -0.285 1.285 18 H -0.283 1.283 19 H -0.276 1.276 20 C 0.166 3.834 21 N -0.521 5.521 22 H 0.081 0.919 23 H 0.083 0.917 24 H 0.082 0.918 25 H 0.162 0.838 26 H 0.042 0.958 27 H 0.083 0.917 28 H 0.022 0.978 29 H 0.042 0.958 30 H 0.076 0.924 31 H 0.051 0.949 32 H 0.058 0.942 33 H 0.022 0.978 34 H 0.268 0.732 35 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.116 2.366 -10.662 16.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.032 3.968 3 N -0.236 5.236 4 C -0.015 4.015 5 C -0.175 4.175 6 C -0.037 4.037 7 N -0.243 5.243 8 C -0.116 4.116 9 C 0.081 3.919 10 H 0.050 0.950 11 C -0.246 4.246 12 C -0.626 4.626 13 H 0.081 0.919 14 C -0.174 4.174 15 N -0.538 5.538 16 Si 0.871 3.129 17 H -0.211 1.211 18 H -0.209 1.209 19 H -0.203 1.203 20 C 0.000 4.000 21 N -0.235 5.235 22 H 0.100 0.900 23 H 0.102 0.898 24 H 0.101 0.899 25 H 0.180 0.820 26 H 0.060 0.940 27 H 0.101 0.899 28 H 0.040 0.960 29 H 0.061 0.939 30 H 0.094 0.906 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.041 0.959 34 H 0.078 0.922 35 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -11.807 1.416 -10.696 15.994 hybrid contribution -0.073 1.283 -0.022 1.286 sum -11.880 2.699 -10.718 16.226 Atomic orbital electron populations 1.20500 0.86091 1.03914 1.03475 1.23176 0.98062 0.83751 0.91796 1.68222 1.10005 1.30562 1.14845 1.23110 0.89377 0.98355 0.90631 1.21716 0.99078 0.95274 1.01465 1.20964 0.88046 1.01674 0.93004 1.62339 1.17211 1.33876 1.10882 1.22300 0.98111 0.90298 1.00863 1.19672 0.81324 0.92470 0.98475 0.95016 1.22883 1.02191 1.01938 0.97614 1.21887 0.97687 1.52078 0.90989 0.91907 1.25670 0.96329 0.94599 1.00808 1.70865 1.37293 1.42802 1.02859 0.84090 0.76393 0.77036 0.75367 1.21128 1.20884 1.20259 1.23151 0.88975 0.98628 0.89237 1.68259 1.10219 1.30395 1.14622 0.90010 0.89829 0.89906 0.82040 0.94012 0.89902 0.95983 0.93943 0.90571 0.93030 0.92277 0.95935 0.92225 0.81364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.81 10.32 36.01 0.37 -0.44 16 2 C 0.30 4.24 7.64 -157.20 -1.20 3.04 16 3 N -0.52 -7.72 10.33 -10.73 -0.11 -7.83 16 4 C 0.15 2.16 9.25 -17.20 -0.16 2.00 16 5 C -0.17 -2.53 4.91 -104.36 -0.51 -3.04 16 6 C 0.09 1.46 4.74 -4.97 -0.02 1.44 16 7 N -0.52 -10.32 4.69 -237.73 -1.12 -11.43 16 8 C 0.03 0.61 8.50 60.06 0.51 1.12 16 9 C 0.19 4.25 1.89 -68.86 -0.13 4.12 16 10 H 0.03 0.73 6.57 -51.93 -0.34 0.39 16 11 C -0.19 -3.90 8.03 37.16 0.30 -3.61 16 12 C -0.59 -15.95 8.32 -34.44 -0.29 -16.24 16 13 H 0.06 1.87 7.15 -52.48 -0.38 1.50 16 14 C 0.03 0.88 5.33 -17.82 -0.09 0.78 16 15 N -0.90 -27.20 13.70 55.43 0.76 -26.44 16 16 Si 1.04 24.32 26.47 -169.99 -4.50 19.82 16 17 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 18 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 19 H -0.28 -5.90 5.56 56.52 0.31 -5.59 16 20 C 0.17 2.44 11.01 -17.20 -0.19 2.25 16 21 N -0.52 -7.84 10.33 -10.72 -0.11 -7.95 16 22 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.16 1.99 8.02 -52.49 -0.42 1.57 16 26 H 0.04 0.62 6.91 -51.93 -0.36 0.26 16 27 H 0.08 1.24 7.89 -51.93 -0.41 0.83 16 28 H 0.02 0.39 6.33 -51.93 -0.33 0.06 16 29 H 0.04 0.72 5.92 -51.93 -0.31 0.41 16 30 H 0.08 1.62 6.75 -51.93 -0.35 1.27 16 31 H 0.05 1.09 6.64 -51.93 -0.34 0.75 16 32 H 0.06 1.28 4.92 -51.93 -0.26 1.03 16 33 H 0.02 0.40 6.70 -51.92 -0.35 0.05 16 34 H 0.27 8.06 8.72 -40.82 -0.36 7.70 16 35 H 0.17 2.18 8.06 -52.49 -0.42 1.75 16 LS Contribution 280.25 15.07 4.22 4.22 Total: -1.00 -30.50 280.25 -7.04 -37.55 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -4.77 Total: 0.64 kcal Atomic # 6 Polarization: -7.16 SS G_CDS: -1.42 Total: -8.58 kcal Atomic # 7 Polarization: -53.07 SS G_CDS: -0.58 Total: -53.65 kcal Atomic # 14 Polarization: 24.32 SS G_CDS: -4.50 Total: 19.82 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -30.50 -7.04 -37.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351893394.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.925 kcal (2) G-P(sol) polarization free energy of solvation -30.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds