Wall clock time and date at job start Sun Mar 29 2020 21:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30840 * 125.89798 * 2 1 4 4 N 1.40091 * 108.20123 * 180.14504 * 3 2 1 5 5 C 1.46503 * 126.03465 * 179.85635 * 4 3 2 6 6 C 1.34940 * 107.92577 * 359.59044 * 4 3 2 7 7 C 1.35312 * 107.74991 * 0.24129 * 6 4 3 8 8 C 1.50700 * 126.04340 * 179.97438 * 7 6 4 9 9 N 1.46500 * 109.47326 * 259.97693 * 8 7 6 10 10 C 1.36934 * 120.00173 * 89.99975 * 9 8 7 11 11 H 1.08001 * 120.00582 * 217.28922 * 10 9 8 12 12 C 1.38821 * 119.99810 * 37.28089 * 10 9 8 13 13 N 1.31622 * 119.99522 * 20.82180 * 12 10 9 14 14 Si 1.86796 * 119.99936 * 200.81210 * 12 10 9 15 15 H 1.48502 * 109.47010 * 90.00685 * 14 12 10 16 16 H 1.48503 * 109.47207 * 210.00212 * 14 12 10 17 17 H 1.48498 * 109.47432 * 330.00506 * 14 12 10 18 18 C 1.46502 * 119.99862 * 269.99870 * 9 8 7 19 19 C 1.53000 * 117.49710 * 187.26578 * 18 9 8 20 20 C 1.53005 * 117.49613 * 118.61023 * 18 9 8 21 21 H 1.09002 * 109.47223 * 270.30041 * 1 2 3 22 22 H 1.09005 * 109.47212 * 30.30317 * 1 2 3 23 23 H 1.09000 * 109.47095 * 150.30267 * 1 2 3 24 24 H 1.08993 * 109.46690 * 269.69015 * 5 4 3 25 25 H 1.09007 * 109.46900 * 29.68908 * 5 4 3 26 26 H 1.08993 * 109.47262 * 149.68677 * 5 4 3 27 27 H 1.08001 * 126.12455 * 180.21788 * 6 4 3 28 28 H 1.08996 * 109.47302 * 19.98085 * 8 7 6 29 29 H 1.09005 * 109.47232 * 139.97850 * 8 7 6 30 30 H 0.97006 * 119.99386 * 174.87290 * 13 12 10 31 31 H 1.08997 * 115.55298 * 332.93487 * 18 9 8 32 32 H 1.09006 * 117.50004 * 0.02562 * 19 18 9 33 33 H 1.09001 * 117.50338 * 145.02149 * 19 18 9 34 34 H 1.08996 * 117.49407 * 214.97963 * 20 18 9 35 35 H 1.08996 * 117.49931 * 359.97105 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6340 -0.0034 5 6 4.7899 1.5007 -0.0075 6 6 3.6142 -0.7153 0.0038 7 6 2.3272 -1.1330 0.0060 8 6 1.8599 -2.5657 0.0131 9 7 1.4797 -2.9621 -1.3451 10 6 2.4122 -3.5105 -2.1846 11 1 2.3988 -3.2701 -3.2374 12 6 3.3750 -4.3754 -1.6824 13 7 3.1736 -4.9901 -0.5361 14 14 4.9559 -4.6669 -2.6336 15 1 5.9791 -3.6783 -2.2080 16 1 5.4513 -6.0402 -2.3615 17 1 4.6944 -4.5140 -4.0874 18 6 0.1018 -2.7719 -1.8050 19 6 -0.2757 -3.3584 -3.1668 20 6 -0.1219 -1.8444 -3.0012 21 1 -0.3634 0.0054 1.0277 22 1 -0.3634 0.8873 -0.5186 23 1 -0.3633 -0.8927 -0.5091 24 1 5.0832 1.7102 -1.0361 25 1 4.5561 2.4359 0.5014 26 1 5.6091 1.0009 0.5093 27 1 4.4891 -1.3485 0.0068 28 1 2.6654 -3.2089 0.3673 29 1 0.9991 -2.6639 0.6746 30 1 3.8110 -5.6501 -0.2213 31 1 -0.6595 -2.7800 -1.0250 32 1 0.5010 -3.8862 -3.7203 33 1 -1.2855 -3.7520 -3.2829 34 1 -1.0306 -1.2426 -3.0082 35 1 0.7559 -1.3755 -3.4455 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352743885.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:54 Heat of formation + Delta-G solvation = 126.699359 kcal Electronic energy + Delta-G solvation = -17129.903168 eV Core-core repulsion = 14552.517626 eV Total energy + Delta-G solvation = -2577.385543 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.45869 -36.95219 -33.78960 -33.13240 -30.96146 -29.46984 -28.72529 -25.90832 -24.51794 -22.83104 -21.30340 -20.16732 -19.65492 -18.77867 -16.47778 -15.70618 -15.35561 -14.93987 -14.34462 -13.92063 -13.48367 -13.21039 -13.01647 -12.75368 -12.24590 -11.94934 -11.81073 -11.60188 -11.32050 -11.13466 -10.83319 -10.62023 -10.55363 -10.42766 -10.00922 -9.59257 -9.49698 -9.21293 -8.49690 -8.41380 -7.50988 -6.43727 -5.80275 -3.34024 2.58276 3.13144 3.31306 3.40157 3.42126 3.57083 4.44917 4.95892 5.00601 5.36581 5.39264 5.45314 5.55165 5.57236 5.60330 5.88547 5.96108 6.10206 6.14020 6.28016 6.38138 6.45885 6.54377 6.61853 6.71698 6.80232 7.05281 7.16990 7.21240 7.44043 7.71544 7.75875 7.84757 8.44145 8.54916 9.19674 9.82430 10.40143 11.20871 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.018312 B = 0.011766 C = 0.008310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.653413 B = 2379.121443 C = 3368.796863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.080 3.920 3 N -0.320 5.320 4 N -0.392 5.392 5 C 0.111 3.889 6 C 0.053 3.947 7 C -0.214 4.214 8 C 0.214 3.786 9 N -0.543 5.543 10 C -0.249 4.249 11 H 0.059 0.941 12 C 0.015 3.985 13 N -0.889 5.889 14 Si 0.896 3.104 15 H -0.287 1.287 16 H -0.291 1.291 17 H -0.278 1.278 18 C 0.132 3.868 19 C -0.195 4.195 20 C -0.227 4.227 21 H 0.065 0.935 22 H 0.061 0.939 23 H 0.087 0.913 24 H 0.064 0.936 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.164 0.836 28 H 0.102 0.898 29 H 0.034 0.966 30 H 0.256 0.744 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.729 7.801 1.857 8.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.086 4.086 3 N -0.143 5.143 4 N -0.176 5.176 5 C -0.031 4.031 6 C -0.091 4.091 7 C -0.227 4.227 8 C 0.087 3.913 9 N -0.259 5.259 10 C -0.379 4.379 11 H 0.076 0.924 12 C -0.185 4.185 13 N -0.532 5.532 14 Si 0.726 3.274 15 H -0.214 1.214 16 H -0.217 1.217 17 H -0.204 1.204 18 C 0.022 3.978 19 C -0.234 4.234 20 C -0.268 4.268 21 H 0.084 0.916 22 H 0.080 0.920 23 H 0.106 0.894 24 H 0.083 0.917 25 H 0.098 0.902 26 H 0.098 0.902 27 H 0.181 0.819 28 H 0.120 0.880 29 H 0.052 0.948 30 H 0.066 0.934 31 H 0.104 0.896 32 H 0.116 0.884 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.380 9.026 2.007 9.254 hybrid contribution 1.130 -0.939 -0.753 1.651 sum 0.750 8.087 1.254 8.218 Atomic orbital electron populations 1.20248 0.87672 1.03433 1.01844 1.22149 0.96377 0.90812 0.99300 1.77072 0.86632 1.23210 1.27414 1.48203 1.04923 1.04821 1.59674 1.21623 0.84384 0.94683 1.02454 1.22288 0.99816 0.83827 1.03174 1.21313 0.91215 0.99007 1.11128 1.19339 0.99588 0.86910 0.85442 1.43366 1.02776 1.67671 1.12062 1.18916 1.06285 1.21003 0.91705 0.92384 1.25137 1.00039 0.96134 0.97211 1.69886 1.36061 1.25538 1.21692 0.86400 0.84070 0.77062 0.79913 1.21436 1.21694 1.20363 1.21077 0.88482 0.99765 0.88464 1.23077 1.00772 0.95607 1.03934 1.23389 1.01220 0.92528 1.09646 0.91632 0.92044 0.89449 0.91726 0.90209 0.90218 0.81892 0.88000 0.94806 0.93357 0.89617 0.88422 0.90794 0.91016 0.90077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.22 10.26 36.01 0.37 -0.85 16 2 C 0.08 1.60 7.22 -82.40 -0.59 1.01 16 3 N -0.32 -6.43 12.58 33.67 0.42 -6.01 16 4 N -0.39 -7.23 4.01 -68.17 -0.27 -7.50 16 5 C 0.11 1.42 11.47 59.85 0.69 2.10 16 6 C 0.05 1.07 11.40 -17.23 -0.20 0.88 16 7 C -0.21 -4.58 5.68 -105.05 -0.60 -5.18 16 8 C 0.21 4.95 5.45 -5.19 -0.03 4.92 16 9 N -0.54 -13.18 2.75 -167.02 -0.46 -13.64 16 10 C -0.25 -6.61 8.26 -15.06 -0.12 -6.73 16 11 H 0.06 1.59 7.10 -52.49 -0.37 1.22 16 12 C 0.01 0.39 4.97 -17.43 -0.09 0.31 16 13 N -0.89 -24.50 11.41 55.49 0.63 -23.87 16 14 Si 0.90 21.07 29.61 -169.99 -5.03 16.04 16 15 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 16 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 18 C 0.13 2.78 4.83 -67.93 -0.33 2.46 16 19 C -0.20 -3.92 9.78 -26.69 -0.26 -4.18 16 20 C -0.23 -4.42 9.90 -26.69 -0.26 -4.68 16 21 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 22 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 23 H 0.09 1.48 4.61 -51.93 -0.24 1.24 16 24 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 25 H 0.08 0.90 8.14 -51.92 -0.42 0.48 16 26 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.16 3.11 8.06 -52.49 -0.42 2.68 16 28 H 0.10 2.62 5.46 -51.93 -0.28 2.34 16 29 H 0.03 0.74 8.06 -51.93 -0.42 0.32 16 30 H 0.26 6.83 8.32 -40.82 -0.34 6.49 16 31 H 0.09 1.67 7.39 -51.93 -0.38 1.29 16 32 H 0.10 2.17 6.69 -51.93 -0.35 1.82 16 33 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 34 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 35 H 0.08 1.76 8.14 -51.93 -0.42 1.33 16 LS Contribution 291.72 15.07 4.40 4.40 Total: -1.00 -30.04 291.72 -6.72 -36.77 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -4.99 Total: 3.76 kcal Atomic # 6 Polarization: -8.52 SS G_CDS: -1.43 Total: -9.94 kcal Atomic # 7 Polarization: -51.34 SS G_CDS: 0.32 Total: -51.02 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.03 Total: 16.04 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -30.04 -6.72 -36.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352743885.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.468 kcal (2) G-P(sol) polarization free energy of solvation -30.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds