Wall clock time and date at job start Sun Mar 29 2020 21:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30840 * 125.89798 * 2 1 4 4 N 1.40091 * 108.20123 * 180.14504 * 3 2 1 5 5 C 1.46503 * 126.03465 * 179.85635 * 4 3 2 6 6 C 1.34940 * 107.92577 * 359.59044 * 4 3 2 7 7 C 1.35312 * 107.74991 * 0.24129 * 6 4 3 8 8 C 1.50700 * 126.04340 * 179.97438 * 7 6 4 9 9 N 1.46500 * 109.47326 * 259.97693 * 8 7 6 10 10 C 1.36934 * 120.00173 * 89.99975 * 9 8 7 11 11 H 1.08001 * 120.00582 * 217.28922 * 10 9 8 12 12 C 1.38821 * 119.99810 * 37.28089 * 10 9 8 13 13 N 1.31622 * 119.99522 * 20.82180 * 12 10 9 14 14 Si 1.86796 * 119.99936 * 200.81210 * 12 10 9 15 15 H 1.48502 * 109.47010 * 90.00685 * 14 12 10 16 16 H 1.48503 * 109.47207 * 210.00212 * 14 12 10 17 17 H 1.48498 * 109.47432 * 330.00506 * 14 12 10 18 18 C 1.46502 * 119.99862 * 269.99870 * 9 8 7 19 19 C 1.53000 * 117.49710 * 187.26578 * 18 9 8 20 20 C 1.53005 * 117.49613 * 118.61023 * 18 9 8 21 21 H 1.09002 * 109.47223 * 270.30041 * 1 2 3 22 22 H 1.09005 * 109.47212 * 30.30317 * 1 2 3 23 23 H 1.09000 * 109.47095 * 150.30267 * 1 2 3 24 24 H 1.08993 * 109.46690 * 269.69015 * 5 4 3 25 25 H 1.09007 * 109.46900 * 29.68908 * 5 4 3 26 26 H 1.08993 * 109.47262 * 149.68677 * 5 4 3 27 27 H 1.08001 * 126.12455 * 180.21788 * 6 4 3 28 28 H 1.08996 * 109.47302 * 19.98085 * 8 7 6 29 29 H 1.09005 * 109.47232 * 139.97850 * 8 7 6 30 30 H 0.97006 * 119.99386 * 174.87290 * 13 12 10 31 31 H 1.08997 * 115.55298 * 332.93487 * 18 9 8 32 32 H 1.09006 * 117.50004 * 0.02562 * 19 18 9 33 33 H 1.09001 * 117.50338 * 145.02149 * 19 18 9 34 34 H 1.08996 * 117.49407 * 214.97963 * 20 18 9 35 35 H 1.08996 * 117.49931 * 359.97105 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6340 -0.0034 5 6 4.7899 1.5007 -0.0075 6 6 3.6142 -0.7153 0.0038 7 6 2.3272 -1.1330 0.0060 8 6 1.8599 -2.5657 0.0131 9 7 1.4797 -2.9621 -1.3451 10 6 2.4122 -3.5105 -2.1846 11 1 2.3988 -3.2701 -3.2374 12 6 3.3750 -4.3754 -1.6824 13 7 3.1736 -4.9901 -0.5361 14 14 4.9559 -4.6669 -2.6336 15 1 5.9791 -3.6783 -2.2080 16 1 5.4513 -6.0402 -2.3615 17 1 4.6944 -4.5140 -4.0874 18 6 0.1018 -2.7719 -1.8050 19 6 -0.2757 -3.3584 -3.1668 20 6 -0.1219 -1.8444 -3.0012 21 1 -0.3634 0.0054 1.0277 22 1 -0.3634 0.8873 -0.5186 23 1 -0.3633 -0.8927 -0.5091 24 1 5.0832 1.7102 -1.0361 25 1 4.5561 2.4359 0.5014 26 1 5.6091 1.0009 0.5093 27 1 4.4891 -1.3485 0.0068 28 1 2.6654 -3.2089 0.3673 29 1 0.9991 -2.6639 0.6746 30 1 3.8110 -5.6501 -0.2213 31 1 -0.6595 -2.7800 -1.0250 32 1 0.5010 -3.8862 -3.7203 33 1 -1.2855 -3.7520 -3.2829 34 1 -1.0306 -1.2426 -3.0082 35 1 0.7559 -1.3755 -3.4455 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352743885.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:53 Heat of formation + Delta-G solvation = 109.561905 kcal Electronic energy + Delta-G solvation = -17130.646304 eV Core-core repulsion = 14552.517626 eV Total energy + Delta-G solvation = -2578.128678 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.95390 -38.66228 -35.45248 -34.66767 -32.78620 -30.95958 -30.17501 -27.57825 -26.13682 -24.46005 -22.89690 -21.81461 -21.30867 -20.29060 -18.25495 -17.34829 -17.05843 -16.40721 -16.05209 -15.66888 -14.93276 -14.74761 -14.34436 -14.23126 -13.75933 -13.49187 -13.21517 -13.07416 -12.83120 -12.80458 -12.63782 -12.41709 -12.28205 -12.11509 -11.86300 -11.25895 -11.20629 -10.86146 -10.35423 -9.96143 -9.05150 -8.35671 -7.77924 -5.36224 1.07413 1.43100 1.46885 1.54515 1.82836 1.99367 2.51823 3.20726 3.51389 3.72317 3.78466 4.08821 4.33181 4.35260 4.43335 4.50084 4.59810 4.61599 4.64567 4.77609 4.90981 4.94118 4.99622 5.10842 5.21707 5.26396 5.41458 5.52634 5.58872 5.72370 5.81717 6.01918 6.31389 6.54614 6.94018 7.22591 7.93606 8.45108 9.18484 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.018312 B = 0.011766 C = 0.008310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.653413 B = 2379.121443 C = 3368.796863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.072 3.928 3 N -0.334 5.334 4 N -0.389 5.389 5 C 0.099 3.901 6 C 0.047 3.953 7 C -0.239 4.239 8 C 0.223 3.777 9 N -0.558 5.558 10 C -0.252 4.252 11 H 0.042 0.958 12 C -0.025 4.025 13 N -0.914 5.914 14 Si 0.948 3.052 15 H -0.282 1.282 16 H -0.292 1.292 17 H -0.280 1.280 18 C 0.112 3.888 19 C -0.195 4.195 20 C -0.204 4.204 21 H 0.085 0.915 22 H 0.073 0.927 23 H 0.083 0.917 24 H 0.076 0.924 25 H 0.096 0.904 26 H 0.105 0.895 27 H 0.168 0.832 28 H 0.073 0.927 29 H 0.037 0.963 30 H 0.254 0.746 31 H 0.106 0.894 32 H 0.069 0.931 33 H 0.104 0.896 34 H 0.105 0.895 35 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.076 9.062 1.714 9.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.093 4.093 3 N -0.159 5.159 4 N -0.172 5.172 5 C -0.041 4.041 6 C -0.099 4.099 7 C -0.252 4.252 8 C 0.097 3.903 9 N -0.275 5.275 10 C -0.382 4.382 11 H 0.060 0.940 12 C -0.222 4.222 13 N -0.558 5.558 14 Si 0.777 3.223 15 H -0.208 1.208 16 H -0.218 1.218 17 H -0.205 1.205 18 C 0.004 3.996 19 C -0.233 4.233 20 C -0.245 4.245 21 H 0.103 0.897 22 H 0.092 0.908 23 H 0.102 0.898 24 H 0.094 0.906 25 H 0.115 0.885 26 H 0.123 0.877 27 H 0.185 0.815 28 H 0.091 0.909 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.124 0.876 32 H 0.088 0.912 33 H 0.123 0.877 34 H 0.123 0.877 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.730 10.326 1.857 10.517 hybrid contribution 1.244 -1.272 -0.715 1.918 sum 0.514 9.054 1.142 9.140 Atomic orbital electron populations 1.20324 0.85595 1.03778 1.03272 1.22558 0.97882 0.90048 0.98857 1.77019 0.87477 1.23474 1.27905 1.48586 1.05699 1.04740 1.58179 1.22054 0.83216 0.94930 1.03881 1.22398 0.99703 0.84953 1.02822 1.21208 0.92287 0.98521 1.13222 1.19077 0.98681 0.87555 0.85017 1.43499 1.03827 1.68048 1.12079 1.18918 1.07222 1.20700 0.91378 0.94014 1.25648 1.02185 0.96291 0.98103 1.69998 1.36742 1.26179 1.22859 0.85588 0.81281 0.76790 0.78680 1.20824 1.21794 1.20497 1.21329 0.87553 1.01225 0.89506 1.23092 1.01506 0.96032 1.02666 1.23270 1.01443 0.92313 1.07494 0.89679 0.90772 0.89836 0.90594 0.88519 0.87696 0.81493 0.90907 0.94419 0.93668 0.87626 0.91199 0.87742 0.87665 0.92695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.21 10.26 71.24 0.73 -1.48 16 2 C 0.07 2.81 7.22 43.10 0.31 3.12 16 3 N -0.33 -12.95 12.58 -47.38 -0.60 -13.54 16 4 N -0.39 -13.73 4.01 -369.58 -1.48 -15.21 16 5 C 0.10 2.30 11.47 127.77 1.47 3.77 16 6 C 0.05 1.88 11.40 83.54 0.95 2.83 16 7 C -0.24 -10.20 5.68 -20.14 -0.11 -10.31 16 8 C 0.22 10.43 5.45 85.63 0.47 10.89 16 9 N -0.56 -27.19 2.75 -682.32 -1.88 -29.07 16 10 C -0.25 -13.53 8.26 84.04 0.69 -12.84 16 11 H 0.04 2.35 7.10 -2.91 -0.02 2.33 16 12 C -0.02 -1.33 4.97 84.86 0.42 -0.91 16 13 N -0.91 -51.21 11.41 21.65 0.25 -50.96 16 14 Si 0.95 43.69 29.61 68.60 2.03 45.72 16 15 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 16 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 17 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 18 C 0.11 4.62 4.83 44.99 0.22 4.84 16 19 C -0.19 -7.56 9.78 30.62 0.30 -7.26 16 20 C -0.20 -7.61 9.90 30.62 0.30 -7.31 16 21 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 22 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 23 H 0.08 2.65 4.61 -2.39 -0.01 2.64 16 24 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.10 1.92 8.14 -2.38 -0.02 1.91 16 26 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 27 H 0.17 6.35 8.06 -2.91 -0.02 6.33 16 28 H 0.07 3.85 5.46 -2.39 -0.01 3.83 16 29 H 0.04 1.67 8.06 -2.38 -0.02 1.65 16 30 H 0.25 13.77 8.32 -92.70 -0.77 12.99 16 31 H 0.11 3.90 7.39 -2.39 -0.02 3.89 16 32 H 0.07 3.11 6.69 -2.38 -0.02 3.10 16 33 H 0.10 3.39 8.14 -2.39 -0.02 3.37 16 34 H 0.11 3.21 8.14 -2.39 -0.02 3.19 16 35 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -64.20 291.72 5.14 -59.06 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: 1.07 Total: 18.64 kcal Atomic # 6 Polarization: -20.40 SS G_CDS: 5.75 Total: -14.65 kcal Atomic # 7 Polarization: -105.07 SS G_CDS: -3.71 Total: -108.78 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -64.20 5.14 -59.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352743885.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.625 kcal (2) G-P(sol) polarization free energy of solvation -64.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds