Wall clock time and date at job start Sun Mar 29 2020 22:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46894 * 111.00271 * 2 1 4 4 C 1.52999 * 109.47357 * 293.95794 * 3 2 1 5 5 C 1.50702 * 109.47313 * 180.02562 * 4 3 2 6 6 H 1.07998 * 119.99874 * 359.97438 * 5 4 3 7 7 C 1.37883 * 119.99696 * 180.02562 * 5 4 3 8 8 N 1.31505 * 120.00278 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99527 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47261 * 59.99772 * 9 7 5 11 11 H 1.48498 * 109.46924 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47201 * 299.99830 * 9 7 5 13 13 C 1.46895 * 110.99923 * 123.95638 * 2 1 3 14 14 C 1.53004 * 109.47056 * 66.04396 * 13 2 1 15 15 C 1.50706 * 109.46965 * 179.97438 * 14 13 2 16 16 C 1.38386 * 120.00005 * 124.99984 * 15 14 13 17 17 N 1.32124 * 119.99712 * 180.02562 * 16 15 14 18 18 C 1.32158 * 120.00097 * 359.97438 * 17 16 15 19 19 C 1.38336 * 120.00075 * 0.26620 * 18 17 16 20 20 N 1.32127 * 120.00100 * 305.02162 * 15 14 13 21 21 H 1.09003 * 109.46672 * 296.04718 * 1 2 3 22 22 H 1.09002 * 109.47158 * 56.04346 * 1 2 3 23 23 H 1.08998 * 109.47506 * 176.04269 * 1 2 3 24 24 H 1.09007 * 109.47298 * 53.95511 * 3 2 1 25 25 H 1.08997 * 109.47456 * 173.95144 * 3 2 1 26 26 H 1.09003 * 109.47303 * 299.99427 * 4 3 2 27 27 H 1.08998 * 109.47265 * 59.99837 * 4 3 2 28 28 H 0.97004 * 120.00346 * 180.02562 * 8 7 5 29 29 H 1.09000 * 109.47214 * 306.04278 * 13 2 1 30 30 H 1.08999 * 109.47130 * 186.04364 * 13 2 1 31 31 H 1.09000 * 109.47206 * 59.99876 * 14 13 2 32 32 H 1.08999 * 109.47125 * 299.99971 * 14 13 2 33 33 H 1.08005 * 120.00186 * 0.03930 * 16 15 14 34 34 H 1.08002 * 119.99718 * 179.97438 * 18 17 16 35 35 H 1.07998 * 120.00403 * 179.72028 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6315 2.0575 -1.3182 5 6 2.1722 3.4641 -1.3184 6 1 2.7202 3.8321 -0.4637 7 6 1.9662 4.2816 -2.4095 8 7 1.2984 3.8337 -3.4501 9 14 2.6358 6.0255 -2.4095 10 1 4.1131 5.9886 -2.2626 11 1 2.2826 6.6914 -3.6890 12 1 2.0446 6.7828 -1.2771 13 6 1.9954 -0.7660 1.1375 14 6 1.6314 -2.2427 0.9702 15 6 2.1720 -3.0286 2.1369 16 6 1.3222 -3.8154 2.8944 17 7 1.7961 -4.5040 3.9176 18 6 3.0817 -4.4418 4.2173 19 6 3.9303 -3.6514 3.4631 20 7 3.4572 -2.9661 2.4368 21 1 -0.3633 0.4513 0.9233 22 1 -0.3633 0.5740 -0.8524 23 1 -0.3634 -1.0252 -0.0709 24 1 1.5612 1.9273 0.8310 25 1 3.0797 1.3443 0.1083 26 1 2.0658 1.5016 -2.1492 27 1 0.5472 2.0845 -1.4264 28 1 1.1538 4.4087 -4.2178 29 1 1.5611 -0.3873 2.0628 30 1 3.0797 -0.6612 1.1755 31 1 2.0657 -2.6214 0.0450 32 1 0.5471 -2.3475 0.9322 33 1 0.2716 -3.8667 2.6491 34 1 3.4690 -5.0044 5.0539 35 1 4.9801 -3.5970 3.7107 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357042153.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:54 Heat of formation + Delta-G solvation = 41.558964 kcal Electronic energy + Delta-G solvation = -15697.862335 eV Core-core repulsion = 13116.784828 eV Total energy + Delta-G solvation = -2581.077507 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.25080 -37.46597 -34.72785 -33.51234 -32.68570 -30.21880 -28.53472 -26.37492 -24.98944 -24.49860 -22.94256 -20.93068 -19.85317 -17.73938 -17.15744 -16.52550 -16.05161 -15.31410 -14.78726 -14.66357 -14.49774 -13.67096 -13.56500 -13.36212 -12.56221 -12.23175 -11.99931 -11.98489 -11.74422 -11.32554 -11.16103 -11.07548 -10.88649 -10.62757 -10.54270 -9.82677 -9.50533 -9.30972 -9.17845 -9.09194 -8.30763 -7.73073 -5.97466 -3.99749 0.57450 0.94933 3.35018 3.39229 3.41699 3.49586 3.85052 4.07581 4.22005 4.41277 4.52290 4.76329 4.92093 5.14725 5.24893 5.32201 5.37279 5.38338 5.66520 5.78994 5.91571 6.10549 6.15087 6.20511 6.30748 6.47842 6.56309 6.99500 7.08440 7.50210 7.58231 7.60301 7.81079 7.92573 8.10556 8.46000 9.07296 9.63621 11.13911 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.056219 B = 0.003872 C = 0.003707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.931823 B = 7230.598822 C = 7550.609741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.542 5.542 3 C 0.063 3.937 4 C 0.028 3.972 5 C -0.523 4.523 6 H 0.053 0.947 7 C 0.058 3.942 8 N -0.894 5.894 9 Si 0.892 3.108 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.278 1.278 13 C 0.065 3.935 14 C -0.066 4.066 15 C 0.094 3.906 16 C 0.049 3.951 17 N -0.438 5.438 18 C 0.033 3.967 19 C 0.055 3.945 20 N -0.433 5.433 21 H 0.017 0.983 22 H 0.079 0.921 23 H 0.057 0.943 24 H 0.019 0.981 25 H 0.061 0.939 26 H 0.025 0.975 27 H 0.018 0.982 28 H 0.261 0.739 29 H 0.023 0.977 30 H 0.081 0.919 31 H 0.097 0.903 32 H 0.084 0.916 33 H 0.169 0.831 34 H 0.167 0.833 35 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.109 -15.527 12.914 20.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.266 5.266 3 C -0.063 4.063 4 C -0.010 4.010 5 C -0.562 4.562 6 H 0.071 0.929 7 C -0.143 4.143 8 N -0.533 5.533 9 Si 0.720 3.280 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.203 1.203 13 C -0.064 4.064 14 C -0.105 4.105 15 C -0.047 4.047 16 C -0.112 4.112 17 N -0.153 5.153 18 C -0.126 4.126 19 C -0.105 4.105 20 N -0.149 5.149 21 H 0.035 0.965 22 H 0.098 0.902 23 H 0.076 0.924 24 H 0.037 0.963 25 H 0.079 0.921 26 H 0.043 0.957 27 H 0.036 0.964 28 H 0.070 0.930 29 H 0.041 0.959 30 H 0.099 0.901 31 H 0.115 0.885 32 H 0.102 0.898 33 H 0.186 0.814 34 H 0.184 0.816 35 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 1.202 -15.702 12.309 19.988 hybrid contribution 0.136 1.343 0.795 1.566 sum 1.338 -14.360 13.104 19.486 Atomic orbital electron populations 1.22451 0.88236 1.00926 1.01047 1.62081 1.07518 1.16169 1.40855 1.22344 0.98616 0.84988 1.00375 1.19101 0.96895 0.94001 0.90954 1.21169 1.35187 0.97857 1.01953 0.92873 1.24987 0.95296 0.98443 0.95558 1.69957 1.40772 1.36506 1.06037 0.86659 0.79475 0.84694 0.77161 1.20216 1.21278 1.20323 1.21970 1.01037 0.91388 0.92011 1.20606 1.00752 0.94646 0.94484 1.22444 0.90086 0.95115 0.97030 1.23660 1.01701 0.93930 0.91870 1.68427 1.14674 1.17794 1.14371 1.23724 0.90129 0.98393 1.00388 1.23822 1.01918 0.93142 0.91601 1.68341 1.14175 1.17842 1.14521 0.96474 0.90196 0.92391 0.96295 0.92072 0.95663 0.96423 0.92950 0.95866 0.90060 0.88477 0.89803 0.81429 0.81558 0.81391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.13 60.07 0.55 0.90 16 2 N -0.54 -9.89 4.76 -242.92 -1.16 -11.04 16 3 C 0.06 1.37 4.90 -3.83 -0.02 1.35 16 4 C 0.03 0.73 4.90 -27.88 -0.14 0.60 16 5 C -0.52 -14.99 9.11 -34.44 -0.31 -15.30 16 6 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 7 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 8 N -0.89 -27.04 13.29 55.43 0.74 -26.30 16 9 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 C 0.06 0.98 4.82 -3.82 -0.02 0.96 16 14 C -0.07 -0.80 5.55 -27.88 -0.15 -0.96 16 15 C 0.09 1.11 6.18 -82.41 -0.51 0.60 16 16 C 0.05 0.51 10.85 -17.37 -0.19 0.32 16 17 N -0.44 -4.81 10.50 -13.06 -0.14 -4.95 16 18 C 0.03 0.29 11.22 -17.38 -0.20 0.10 16 19 C 0.06 0.52 11.22 -17.38 -0.20 0.32 16 20 N -0.43 -5.39 10.05 -9.29 -0.09 -5.48 16 21 H 0.02 0.27 8.14 -51.93 -0.42 -0.16 16 22 H 0.08 1.48 6.30 -51.93 -0.33 1.15 16 23 H 0.06 0.77 6.47 -51.93 -0.34 0.43 16 24 H 0.02 0.41 8.12 -51.92 -0.42 -0.01 16 25 H 0.06 1.32 7.93 -51.93 -0.41 0.90 16 26 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.02 0.48 6.47 -51.93 -0.34 0.15 16 28 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 29 H 0.02 0.35 8.12 -51.93 -0.42 -0.07 16 30 H 0.08 1.31 7.75 -51.93 -0.40 0.91 16 31 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.08 0.86 6.30 -51.93 -0.33 0.53 16 33 H 0.17 1.33 7.96 -52.48 -0.42 0.91 16 34 H 0.17 0.90 8.06 -52.49 -0.42 0.47 16 35 H 0.17 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 294.82 15.07 4.44 4.44 Total: -1.00 -32.39 294.82 -7.56 -39.96 By element: Atomic # 1 Polarization: 1.15 SS G_CDS: -5.06 Total: -3.91 kcal Atomic # 6 Polarization: -8.22 SS G_CDS: -1.28 Total: -9.50 kcal Atomic # 7 Polarization: -47.13 SS G_CDS: -0.65 Total: -47.78 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -32.39 -7.56 -39.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357042153.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.518 kcal (2) G-P(sol) polarization free energy of solvation -32.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds