Wall clock time and date at job start Sun Mar 29 2020 22:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46894 * 111.00271 * 2 1 4 4 C 1.52999 * 109.47357 * 293.95794 * 3 2 1 5 5 C 1.50702 * 109.47313 * 180.02562 * 4 3 2 6 6 H 1.07998 * 119.99874 * 359.97438 * 5 4 3 7 7 C 1.37883 * 119.99696 * 180.02562 * 5 4 3 8 8 N 1.31505 * 120.00278 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99527 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47261 * 59.99772 * 9 7 5 11 11 H 1.48498 * 109.46924 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47201 * 299.99830 * 9 7 5 13 13 C 1.46895 * 110.99923 * 123.95638 * 2 1 3 14 14 C 1.53004 * 109.47056 * 66.04396 * 13 2 1 15 15 C 1.50706 * 109.46965 * 179.97438 * 14 13 2 16 16 C 1.38386 * 120.00005 * 124.99984 * 15 14 13 17 17 N 1.32124 * 119.99712 * 180.02562 * 16 15 14 18 18 C 1.32158 * 120.00097 * 359.97438 * 17 16 15 19 19 C 1.38336 * 120.00075 * 0.26620 * 18 17 16 20 20 N 1.32127 * 120.00100 * 305.02162 * 15 14 13 21 21 H 1.09003 * 109.46672 * 296.04718 * 1 2 3 22 22 H 1.09002 * 109.47158 * 56.04346 * 1 2 3 23 23 H 1.08998 * 109.47506 * 176.04269 * 1 2 3 24 24 H 1.09007 * 109.47298 * 53.95511 * 3 2 1 25 25 H 1.08997 * 109.47456 * 173.95144 * 3 2 1 26 26 H 1.09003 * 109.47303 * 299.99427 * 4 3 2 27 27 H 1.08998 * 109.47265 * 59.99837 * 4 3 2 28 28 H 0.97004 * 120.00346 * 180.02562 * 8 7 5 29 29 H 1.09000 * 109.47214 * 306.04278 * 13 2 1 30 30 H 1.08999 * 109.47130 * 186.04364 * 13 2 1 31 31 H 1.09000 * 109.47206 * 59.99876 * 14 13 2 32 32 H 1.08999 * 109.47125 * 299.99971 * 14 13 2 33 33 H 1.08005 * 120.00186 * 0.03930 * 16 15 14 34 34 H 1.08002 * 119.99718 * 179.97438 * 18 17 16 35 35 H 1.07998 * 120.00403 * 179.72028 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6315 2.0575 -1.3182 5 6 2.1722 3.4641 -1.3184 6 1 2.7202 3.8321 -0.4637 7 6 1.9662 4.2816 -2.4095 8 7 1.2984 3.8337 -3.4501 9 14 2.6358 6.0255 -2.4095 10 1 4.1131 5.9886 -2.2626 11 1 2.2826 6.6914 -3.6890 12 1 2.0446 6.7828 -1.2771 13 6 1.9954 -0.7660 1.1375 14 6 1.6314 -2.2427 0.9702 15 6 2.1720 -3.0286 2.1369 16 6 1.3222 -3.8154 2.8944 17 7 1.7961 -4.5040 3.9176 18 6 3.0817 -4.4418 4.2173 19 6 3.9303 -3.6514 3.4631 20 7 3.4572 -2.9661 2.4368 21 1 -0.3633 0.4513 0.9233 22 1 -0.3633 0.5740 -0.8524 23 1 -0.3634 -1.0252 -0.0709 24 1 1.5612 1.9273 0.8310 25 1 3.0797 1.3443 0.1083 26 1 2.0658 1.5016 -2.1492 27 1 0.5472 2.0845 -1.4264 28 1 1.1538 4.4087 -4.2178 29 1 1.5611 -0.3873 2.0628 30 1 3.0797 -0.6612 1.1755 31 1 2.0657 -2.6214 0.0450 32 1 0.5471 -2.3475 0.9322 33 1 0.2716 -3.8667 2.6491 34 1 3.4690 -5.0044 5.0539 35 1 4.9801 -3.5970 3.7107 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357042153.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:54 Heat of formation + Delta-G solvation = 18.707859 kcal Electronic energy + Delta-G solvation = -15698.853233 eV Core-core repulsion = 13116.784828 eV Total energy + Delta-G solvation = -2582.068405 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.01718 -38.89439 -35.77473 -35.09997 -34.00652 -31.82244 -29.84297 -27.81958 -26.41301 -25.47378 -24.25683 -22.25360 -21.51703 -18.66835 -18.45562 -17.84993 -17.08824 -16.58137 -16.47437 -15.91587 -15.83010 -15.02962 -14.85359 -14.46629 -14.07358 -13.79992 -13.26792 -13.16309 -13.09027 -12.80348 -12.60395 -12.52982 -12.42017 -12.13572 -11.81319 -11.78979 -11.33709 -11.25544 -10.52756 -10.14753 -9.98064 -9.20394 -8.19286 -6.30638 -0.16108 0.17663 1.40419 1.43800 1.51713 2.40737 2.72722 2.98023 3.13826 3.25329 3.39717 3.57554 3.92055 4.04281 4.23312 4.31886 4.36540 4.45764 4.49292 4.60464 4.64462 4.69915 4.81017 4.97844 5.06484 5.10412 5.17483 5.46044 5.47102 5.67545 5.78852 6.10126 6.27892 6.33627 6.35459 6.85359 6.86077 7.38128 8.92620 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.056219 B = 0.003872 C = 0.003707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.931823 B = 7230.598822 C = 7550.609741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.554 5.554 3 C 0.079 3.921 4 C 0.036 3.964 5 C -0.548 4.548 6 H 0.058 0.942 7 C 0.002 3.998 8 N -0.930 5.930 9 Si 0.966 3.034 10 H -0.267 1.267 11 H -0.282 1.282 12 H -0.267 1.267 13 C 0.072 3.928 14 C -0.055 4.055 15 C 0.076 3.924 16 C 0.047 3.953 17 N -0.460 5.460 18 C 0.041 3.959 19 C 0.050 3.950 20 N -0.467 5.467 21 H 0.025 0.975 22 H 0.051 0.949 23 H 0.094 0.906 24 H 0.018 0.982 25 H 0.058 0.942 26 H -0.007 1.007 27 H -0.001 1.001 28 H 0.264 0.736 29 H 0.026 0.974 30 H 0.067 0.933 31 H 0.088 0.912 32 H 0.105 0.895 33 H 0.190 0.810 34 H 0.203 0.797 35 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.483 -16.022 14.543 21.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.278 5.278 3 C -0.048 4.048 4 C -0.001 4.001 5 C -0.587 4.587 6 H 0.076 0.924 7 C -0.196 4.196 8 N -0.570 5.570 9 Si 0.790 3.210 10 H -0.192 1.192 11 H -0.207 1.207 12 H -0.192 1.192 13 C -0.056 4.056 14 C -0.094 4.094 15 C -0.064 4.064 16 C -0.112 4.112 17 N -0.174 5.174 18 C -0.118 4.118 19 C -0.110 4.110 20 N -0.182 5.182 21 H 0.043 0.957 22 H 0.070 0.930 23 H 0.112 0.888 24 H 0.037 0.963 25 H 0.076 0.924 26 H 0.011 0.989 27 H 0.017 0.983 28 H 0.073 0.927 29 H 0.044 0.956 30 H 0.085 0.915 31 H 0.106 0.894 32 H 0.123 0.877 33 H 0.207 0.793 34 H 0.219 0.781 35 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 1.563 -16.211 13.947 21.442 hybrid contribution 0.052 1.402 0.340 1.444 sum 1.615 -14.809 14.287 20.641 Atomic orbital electron populations 1.22461 0.86993 1.02821 1.00140 1.61991 1.08751 1.14188 1.42877 1.21971 0.98509 0.86850 0.97514 1.18927 0.95249 0.93570 0.92370 1.21610 1.35526 0.99108 1.02412 0.92371 1.25953 0.95386 1.03248 0.94999 1.70093 1.41852 1.38336 1.06747 0.85492 0.79078 0.78838 0.77572 1.19210 1.20682 1.19170 1.21916 1.00023 0.92960 0.90731 1.20466 1.02046 0.92255 0.94612 1.22338 0.90369 0.96230 0.97471 1.23939 1.02560 0.93261 0.91398 1.68505 1.15813 1.18371 1.14756 1.24323 0.89400 0.97518 1.00606 1.24348 1.03441 0.92463 0.90723 1.68287 1.14802 1.19134 1.16020 0.95680 0.93014 0.88782 0.96336 0.92352 0.98881 0.98304 0.92702 0.95579 0.91475 0.89373 0.87657 0.79305 0.78077 0.78530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.76 9.13 127.69 1.17 1.93 16 2 N -0.55 -20.24 4.76 -922.46 -4.39 -24.63 16 3 C 0.08 3.49 4.90 86.30 0.42 3.91 16 4 C 0.04 1.98 4.90 29.85 0.15 2.13 16 5 C -0.55 -31.97 9.11 25.60 0.23 -31.74 16 6 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 7 C 0.00 0.13 5.46 84.66 0.46 0.59 16 8 N -0.93 -57.39 13.29 21.45 0.28 -57.10 16 9 Si 0.97 44.76 29.54 68.60 2.03 46.79 16 10 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 11 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 12 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 13 C 0.07 2.14 4.82 86.31 0.42 2.55 16 14 C -0.06 -1.27 5.55 29.85 0.17 -1.10 16 15 C 0.08 1.69 6.18 42.55 0.26 1.95 16 16 C 0.05 0.91 10.85 84.68 0.92 1.83 16 17 N -0.46 -9.07 10.50 -195.22 -2.05 -11.12 16 18 C 0.04 0.62 11.22 84.67 0.95 1.57 16 19 C 0.05 0.84 11.22 84.67 0.95 1.79 16 20 N -0.47 -11.07 10.05 -183.29 -1.84 -12.92 16 21 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 22 H 0.05 1.96 6.30 -2.39 -0.02 1.94 16 23 H 0.09 2.32 6.47 -2.39 -0.02 2.30 16 24 H 0.02 0.81 8.12 -2.38 -0.02 0.79 16 25 H 0.06 2.56 7.93 -2.39 -0.02 2.54 16 26 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 27 H 0.00 -0.08 6.47 -2.39 -0.02 -0.09 16 28 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 29 H 0.03 0.76 8.12 -2.39 -0.02 0.74 16 30 H 0.07 2.17 7.75 -2.39 -0.02 2.16 16 31 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.11 1.91 6.30 -2.39 -0.02 1.90 16 33 H 0.19 2.55 7.96 -2.91 -0.02 2.52 16 34 H 0.20 1.42 8.06 -2.91 -0.02 1.40 16 35 H 0.20 1.90 8.06 -2.91 -0.02 1.87 16 Total: -1.00 -70.82 294.82 1.18 -69.64 By element: Atomic # 1 Polarization: 2.87 SS G_CDS: 1.06 Total: 3.93 kcal Atomic # 6 Polarization: -20.68 SS G_CDS: 6.09 Total: -14.59 kcal Atomic # 7 Polarization: -97.77 SS G_CDS: -8.00 Total: -105.77 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -70.82 1.18 -69.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357042153.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.350 kcal (2) G-P(sol) polarization free energy of solvation -70.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds